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<a href="DataProcessing_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Marc Sturm $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_METADATA_DATAPROCESSING_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_METADATA_DATAPROCESSING_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="MetaInfoInterface_8h.html">OpenMS/METADATA/MetaInfoInterface.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="Software_8h.html">OpenMS/METADATA/Software.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="DateTime_8h.html">OpenMS/DATASTRUCTURES/DateTime.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <set></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> {</div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html"> 51</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> :</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="comment">//The different processing types</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9"> 58</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9">ProcessingAction</a></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  {</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ae75d9344e9e326323f2b485cd4c1e003"> 60</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ae75d9344e9e326323f2b485cd4c1e003">DATA_PROCESSING</a>, </div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad6aaf5187119b5738f4648dcb932c240"> 61</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad6aaf5187119b5738f4648dcb932c240">CHARGE_DECONVOLUTION</a>, </div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a1491834ae41afad2cd5d4e69f20aaaae"> 62</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a1491834ae41afad2cd5d4e69f20aaaae">DEISOTOPING</a>, </div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1"> 63</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1">SMOOTHING</a>, </div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9af083c14a6a074a19ac7a75066eb83866"> 64</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9af083c14a6a074a19ac7a75066eb83866">CHARGE_CALCULATION</a>, </div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a2ca454d58033fd433df401a2406fb173"> 65</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a2ca454d58033fd433df401a2406fb173">PRECURSOR_RECALCULATION</a>, </div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267"> 66</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267">BASELINE_REDUCTION</a>, </div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a181a4b8e81bcfae30e38dc548a5586f3"> 67</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a181a4b8e81bcfae30e38dc548a5586f3">PEAK_PICKING</a>, </div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8d86de0851abd047aef8c1cbb3c1603b"> 68</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8d86de0851abd047aef8c1cbb3c1603b">ALIGNMENT</a>, </div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c"> 69</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c">CALIBRATION</a>, </div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a0de981225527baadd805eabc7a029173"> 70</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a0de981225527baadd805eabc7a029173">NORMALIZATION</a>, </div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a9159f47bf89a34ad71b71f283ff09cd9"> 71</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a9159f47bf89a34ad71b71f283ff09cd9">FILTERING</a>, </div>
<div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9acb35c66537bb433359a7234a20229510"> 72</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9acb35c66537bb433359a7234a20229510">QUANTITATION</a>, </div>
<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8669c4188fdedd7d2250c3169a2d155f"> 73</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8669c4188fdedd7d2250c3169a2d155f">FEATURE_GROUPING</a>, </div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a104b6b80ea3c0f59f1c82b5869b4ad1e"> 74</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a104b6b80ea3c0f59f1c82b5869b4ad1e">IDENTIFICATION_MAPPING</a>, </div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ab269e4bf446e6556e4f49a5737931643"> 75</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ab269e4bf446e6556e4f49a5737931643">FORMAT_CONVERSION</a>, </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac7b870e1adfeb8747214d4ef5144376c"> 76</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac7b870e1adfeb8747214d4ef5144376c">CONVERSION_MZDATA</a>, </div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9abb654c12968c8c4c658d61af4a6e0765"> 77</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9abb654c12968c8c4c658d61af4a6e0765">CONVERSION_MZML</a>, </div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac6602550db94324f2d4b712d8962c4cd"> 78</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac6602550db94324f2d4b712d8962c4cd">CONVERSION_MZXML</a>, </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aa20c95ae75ff9c98d471a6e0c30b1f88"> 79</a></span>  <a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aa20c95ae75ff9c98d471a6e0c30b1f88">CONVERSION_DTA</a>, </div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a63bd6a7759424fea6d52652175ee56c4"> 80</a></span>  SIZE_OF_PROCESSINGACTION</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  };</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#a707eb35ae07a03a77ad2836f52e3a21a"> 83</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> std::string NamesOfProcessingAction[SIZE_OF_PROCESSINGACTION];</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a>();</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> & source);</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  ~<a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a>();</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> & operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> & source);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="keywordtype">bool</span> operator!=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Software.html">Software</a> & getSoftware() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <a class="code" href="classOpenMS_1_1Software.html">Software</a> & getSoftware();</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keywordtype">void</span> setSoftware(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Software.html">Software</a> & software);</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  <span class="keyword">const</span> std::set<ProcessingAction> & getProcessingActions() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  std::set<ProcessingAction> & getProcessingActions();</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordtype">void</span> setProcessingActions(<span class="keyword">const</span> std::set<ProcessingAction> & actions);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> </div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> & getCompletionTime() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keywordtype">void</span> setCompletionTime(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> & completion_time);</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> </div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#a3427493dca47c93ad912befc3d83c546"> 121</a></span>  <a class="code" href="classOpenMS_1_1Software.html">Software</a> <a class="code" href="classOpenMS_1_1DataProcessing.html#a3427493dca47c93ad912befc3d83c546">software_</a>;</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#ae5198acc04f169ea72acaeef93ef043c"> 122</a></span>  std::set<ProcessingAction> <a class="code" href="classOpenMS_1_1DataProcessing.html#ae5198acc04f169ea72acaeef93ef043c">processing_actions_</a>;</div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DataProcessing.html#aaf2d292a2ee7ee7067e0491ac1eb700b"> 123</a></span>  <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> <a class="code" href="classOpenMS_1_1DataProcessing.html#aaf2d292a2ee7ee7067e0491ac1eb700b">completion_time_</a>;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  };</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> <span class="preprocessor">#endif // OPENMS_METADATA_DATAPROCESSING_H</span></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a1491834ae41afad2cd5d4e69f20aaaae"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a1491834ae41afad2cd5d4e69f20aaaae">OpenMS::DataProcessing::DEISOTOPING</a></div><div class="ttdoc">Deisotoping. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html">OpenMS::DataProcessing</a></div><div class="ttdoc">Descripton of the applied preprocessing steps. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9af083c14a6a074a19ac7a75066eb83866"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9af083c14a6a074a19ac7a75066eb83866">OpenMS::DataProcessing::CHARGE_CALCULATION</a></div><div class="ttdoc">Determination of the peak charge. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:64</div></div>
<div class="ttc" id="Software_8h_html"><div class="ttname"><a href="Software_8h.html">Software.h</a></div></div>
<div class="ttc" id="DateTime_8h_html"><div class="ttname"><a href="DateTime_8h.html">DateTime.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a2ca454d58033fd433df401a2406fb173"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a2ca454d58033fd433df401a2406fb173">OpenMS::DataProcessing::PRECURSOR_RECALCULATION</a></div><div class="ttdoc">Recalculation of precursor m/z. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:65</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a9159f47bf89a34ad71b71f283ff09cd9"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a9159f47bf89a34ad71b71f283ff09cd9">OpenMS::DataProcessing::FILTERING</a></div><div class="ttdoc">Data filtering or extraction. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ae75d9344e9e326323f2b485cd4c1e003"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ae75d9344e9e326323f2b485cd4c1e003">OpenMS::DataProcessing::DATA_PROCESSING</a></div><div class="ttdoc">General data processing (if no other term applies) </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9aa20c95ae75ff9c98d471a6e0c30b1f88"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aa20c95ae75ff9c98d471a6e0c30b1f88">OpenMS::DataProcessing::CONVERSION_DTA</a></div><div class="ttdoc">Conversion to DTA format. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ac6602550db94324f2d4b712d8962c4cd"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac6602550db94324f2d4b712d8962c4cd">OpenMS::DataProcessing::CONVERSION_MZXML</a></div><div class="ttdoc">Conversion to mzXML format. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:78</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_ae5198acc04f169ea72acaeef93ef043c"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#ae5198acc04f169ea72acaeef93ef043c">OpenMS::DataProcessing::processing_actions_</a></div><div class="ttdeci">std::set< ProcessingAction > processing_actions_</div><div class="ttdef"><b>Definition:</b> DataProcessing.h:122</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267">OpenMS::DataProcessing::BASELINE_REDUCTION</a></div><div class="ttdoc">Baseline reduction. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_aaf2d292a2ee7ee7067e0491ac1eb700b"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#aaf2d292a2ee7ee7067e0491ac1eb700b">OpenMS::DataProcessing::completion_time_</a></div><div class="ttdeci">DateTime completion_time_</div><div class="ttdef"><b>Definition:</b> DataProcessing.h:123</div></div>
<div class="ttc" id="classOpenMS_1_1Software_html"><div class="ttname"><a href="classOpenMS_1_1Software.html">OpenMS::Software</a></div><div class="ttdoc">Description of the software used for processing. </div><div class="ttdef"><b>Definition:</b> Software.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a104b6b80ea3c0f59f1c82b5869b4ad1e"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a104b6b80ea3c0f59f1c82b5869b4ad1e">OpenMS::DataProcessing::IDENTIFICATION_MAPPING</a></div><div class="ttdoc">Identification mapping </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_a3427493dca47c93ad912befc3d83c546"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#a3427493dca47c93ad912befc3d83c546">OpenMS::DataProcessing::software_</a></div><div class="ttdeci">Software software_</div><div class="ttdef"><b>Definition:</b> DataProcessing.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9">OpenMS::DataProcessing::ProcessingAction</a></div><div class="ttdeci">ProcessingAction</div><div class="ttdef"><b>Definition:</b> DataProcessing.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c">OpenMS::DataProcessing::CALIBRATION</a></div><div class="ttdoc">Calibration of m/z positions. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9abb654c12968c8c4c658d61af4a6e0765"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9abb654c12968c8c4c658d61af4a6e0765">OpenMS::DataProcessing::CONVERSION_MZML</a></div><div class="ttdoc">Conversion to mzML format. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a0de981225527baadd805eabc7a029173"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a0de981225527baadd805eabc7a029173">OpenMS::DataProcessing::NORMALIZATION</a></div><div class="ttdoc">Normalization of intensity values. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:70</div></div>
<div class="ttc" id="MetaInfoInterface_8h_html"><div class="ttname"><a href="MetaInfoInterface_8h.html">MetaInfoInterface.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoInterface_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfoInterface.html">OpenMS::MetaInfoInterface</a></div><div class="ttdoc">Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). </div><div class="ttdef"><b>Definition:</b> MetaInfoInterface.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a8d86de0851abd047aef8c1cbb3c1603b"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8d86de0851abd047aef8c1cbb3c1603b">OpenMS::DataProcessing::ALIGNMENT</a></div><div class="ttdoc">Retention time alignment of different maps. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a8669c4188fdedd7d2250c3169a2d155f"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8669c4188fdedd7d2250c3169a2d155f">OpenMS::DataProcessing::FEATURE_GROUPING</a></div><div class="ttdoc">Feature grouping </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:73</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1">OpenMS::DataProcessing::SMOOTHING</a></div><div class="ttdoc">Smoothing of the signal to reduce noise. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ab269e4bf446e6556e4f49a5737931643"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ab269e4bf446e6556e4f49a5737931643">OpenMS::DataProcessing::FORMAT_CONVERSION</a></div><div class="ttdoc">General file format conversion (if no other term applies) </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html"><div class="ttname"><a href="classOpenMS_1_1DateTime.html">OpenMS::DateTime</a></div><div class="ttdoc">DateTime Class. </div><div class="ttdef"><b>Definition:</b> DateTime.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a181a4b8e81bcfae30e38dc548a5586f3"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a181a4b8e81bcfae30e38dc548a5586f3">OpenMS::DataProcessing::PEAK_PICKING</a></div><div class="ttdoc">Peak picking (conversion from raw to peak data) </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9acb35c66537bb433359a7234a20229510"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9acb35c66537bb433359a7234a20229510">OpenMS::DataProcessing::QUANTITATION</a></div><div class="ttdoc">Quantitation. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:72</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ac7b870e1adfeb8747214d4ef5144376c"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ac7b870e1adfeb8747214d4ef5144376c">OpenMS::DataProcessing::CONVERSION_MZDATA</a></div><div class="ttdoc">Convertion to mzData format. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ad6aaf5187119b5738f4648dcb932c240"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad6aaf5187119b5738f4648dcb932c240">OpenMS::DataProcessing::CHARGE_DECONVOLUTION</a></div><div class="ttdoc">Charge deconvolution. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:61</div></div>
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