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<a href="FeatureDeconvolution_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Chris Bielow $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: $</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_ANALYSIS_DECHARGING_FEATUREDECONVOLUTION_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_DECHARGING_FEATUREDECONVOLUTION_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="comment">// OpenMS</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="FeatureMap_8h.html">OpenMS/KERNEL/FeatureMap.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ConsensusMap_8h.html">OpenMS/KERNEL/ConsensusMap.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ILPDCWrapper_8h.html">OpenMS/ANALYSIS/DECHARGING/ILPDCWrapper.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DPosition_8h.html">OpenMS/DATASTRUCTURES/DPosition.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MassExplainer_8h.html">OpenMS/DATASTRUCTURES/MassExplainer.h</a>&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;</div>
<div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="namespaceOpenMS.html">   45</a></span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;{</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a>;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html">   58</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> :</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;  {</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26a1fa1be36806ef6458644f8800db25220">   63</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a> {QFROMFEATURE = 1, <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26a1fa1be36806ef6458644f8800db25220">QHEURISTIC</a>, QALL};</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;</div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">   65</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap&lt;&gt;</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">   66</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Feature.html">Feature</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">FeatureType</a>;</div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a245908b759ecec7e69490a8eff7307f8">   67</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1DPosition.html">DPosition&lt;2&gt;</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a245908b759ecec7e69490a8eff7307f8">ClusterPointType</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a2b382bd00f0bc3e5d06bdfc412428a05">   68</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">FeatureMapType::FeatureType::CoordinateType</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a2b382bd00f0bc3e5d06bdfc412428a05">CoordinateType</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">   69</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1ILPDCWrapper.html#a1fa855763e3c516396c47cd9f995cfe7">ILPDCWrapper::PairsType</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a>;</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a>();</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;    <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> &amp; source);</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> &amp; source);</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a>();</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;    <span class="keywordtype">void</span> compute(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapType</a> &amp; fm_in, <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapType</a> &amp; fm_out, <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; cons_map, <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; cons_map_p);</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;    <span class="keywordtype">void</span> updateMembers_();</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <span class="keyword">struct </span>CmpInfo_;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    <span class="comment">/*</span></div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;<span class="comment">      @brief test for obviously wrong parameter settings and warn</span></div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;<span class="comment"></span></div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="comment">      Currently supports the following scenarios:</span></div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;<span class="comment">       * If the lower charge bound is too high, consensus features with gapped, even charges will occur (e.g. 30,32,34), instead of the true (15,16,17)</span></div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;<span class="comment">         When more than 5% of the cf&#39;s look like this, we report it.</span></div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;<span class="comment"></span></div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="comment">    */</span></div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    <span class="keywordtype">void</span> checkSolution_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; cons_map) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <span class="keywordtype">void</span> inferMoreEdges_(<a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a> &amp; edges, <a class="code" href="classOpenMS_1_1Map.html">Map</a>&lt;<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>, std::set&lt;CmpInfo_&gt; &gt; &amp; feature_adducts);</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    <span class="keywordtype">void</span> printEdgesOfConnectedFeatures_(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> idx_1, <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> idx_2, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a> &amp; feature_relation);</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">bool</span> intensityFilterPassed_(<span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> q1, <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> q2, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; cmp, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Feature.html">FeatureType</a> &amp; f1, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Feature.html">FeatureType</a> &amp; f2);</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;    <span class="keywordtype">bool</span> chargeTestworthy_(<span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> feature_charge, <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> putative_charge, <span class="keyword">const</span> <span class="keywordtype">bool</span> other_unchanged) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;</div>
<div class="line"><a name="l00148"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#ac7727ba3f3253cf99751a2d64eb92582">  148</a></span>&#160;    <a class="code" href="classOpenMS_1_1MassExplainer.html#af4f87e770c56cc4f47fd47833add8ba3">MassExplainer::AdductsType</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#ac7727ba3f3253cf99751a2d64eb92582">potential_adducts_</a>;</div>
<div class="line"><a name="l00150"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#ad091d2c0a14e3ee2f7d434e35f858826">  150</a></span>&#160;    <a class="code" href="classOpenMS_1_1Map.html">Map&lt;Size, String&gt;</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#ad091d2c0a14e3ee2f7d434e35f858826">map_label_</a>;</div>
<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a1032fa6e6ac2839d8d7e99a15960d213">  152</a></span>&#160;    <a class="code" href="classOpenMS_1_1Map.html">Map&lt;String, Size&gt;</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a1032fa6e6ac2839d8d7e99a15960d213">map_label_inverse_</a>;</div>
<div class="line"><a name="l00154"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a40b36349add03ea8664fd7b219493a0c">  154</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a40b36349add03ea8664fd7b219493a0c">enable_intensity_filter_</a>;</div>
<div class="line"><a name="l00156"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#a50f1005db798de909c08506780f1f083">  156</a></span>&#160;    <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#a50f1005db798de909c08506780f1f083">q_try_</a>;</div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureDeconvolution.html#ae4a519159f827033025f26be18263bbd">  158</a></span>&#160;    <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1FeatureDeconvolution.html#ae4a519159f827033025f26be18263bbd">verbose_level_</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;  };</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;<span class="preprocessor">#endif // OPENMS_ANALYSIS_DECHARGING_FEATUREDECONVOLUTION_H</span></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_ae4a519159f827033025f26be18263bbd"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#ae4a519159f827033025f26be18263bbd">OpenMS::FeatureDeconvolution::verbose_level_</a></div><div class="ttdeci">Int verbose_level_</div><div class="ttdoc">amount of debug information displayed </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a1032fa6e6ac2839d8d7e99a15960d213"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a1032fa6e6ac2839d8d7e99a15960d213">OpenMS::FeatureDeconvolution::map_label_inverse_</a></div><div class="ttdeci">Map&lt; String, Size &gt; map_label_inverse_</div><div class="ttdoc">labeling table inverse </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_add205a5ccc5c6579b1a3051b7cf8707c"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">OpenMS::FeatureDeconvolution::FeatureMapType</a></div><div class="ttdeci">FeatureMap FeatureMapType</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:65</div></div>
<div class="ttc" id="ConsensusMap_8h_html"><div class="ttname"><a href="ConsensusMap_8h.html">ConsensusMap.h</a></div></div>
<div class="ttc" id="DPosition_8h_html"><div class="ttname"><a href="DPosition_8h.html">DPosition.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a446e6a53a56ea0d0834e5efc781ece26"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">OpenMS::FeatureDeconvolution::CHARGEMODE</a></div><div class="ttdeci">CHARGEMODE</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap&lt;&gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html"><div class="ttname"><a href="classOpenMS_1_1Compomer.html">OpenMS::Compomer</a></div><div class="ttdoc">Holds information on an edge connecting two features from a (putative) charge ladder. </div><div class="ttdef"><b>Definition:</b> Compomer.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a245908b759ecec7e69490a8eff7307f8"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a245908b759ecec7e69490a8eff7307f8">OpenMS::FeatureDeconvolution::ClusterPointType</a></div><div class="ttdeci">DPosition&lt; 2 &gt; ClusterPointType</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:67</div></div>
<div class="ttc" id="ILPDCWrapper_8h_html"><div class="ttname"><a href="ILPDCWrapper_8h.html">ILPDCWrapper.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a50f1005db798de909c08506780f1f083"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a50f1005db798de909c08506780f1f083">OpenMS::FeatureDeconvolution::q_try_</a></div><div class="ttdeci">CHARGEMODE q_try_</div><div class="ttdoc">status of charge discovery </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:156</div></div>
<div class="ttc" id="classOpenMS_1_1DPosition_html"><div class="ttname"><a href="classOpenMS_1_1DPosition.html">OpenMS::DPosition&lt; 2 &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_ad091d2c0a14e3ee2f7d434e35f858826"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#ad091d2c0a14e3ee2f7d434e35f858826">OpenMS::FeatureDeconvolution::map_label_</a></div><div class="ttdeci">Map&lt; Size, String &gt; map_label_</div><div class="ttdoc">labeling table </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:150</div></div>
<div class="ttc" id="classOpenMS_1_1Feature_html"><div class="ttname"><a href="classOpenMS_1_1Feature.html">OpenMS::Feature</a></div><div class="ttdoc">An LC-MS feature. </div><div class="ttdef"><b>Definition:</b> Feature.h:66</div></div>
<div class="ttc" id="MassExplainer_8h_html"><div class="ttname"><a href="MassExplainer_8h.html">MassExplainer.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a446e6a53a56ea0d0834e5efc781ece26a1fa1be36806ef6458644f8800db25220"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26a1fa1be36806ef6458644f8800db25220">OpenMS::FeatureDeconvolution::QHEURISTIC</a></div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html">OpenMS::FeatureDeconvolution</a></div><div class="ttdoc">An algorithm to decharge features (i.e. as found by FeatureFinder). </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:58</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_aea7cecfe175ce2482ff9bf1a3de2c52c"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">OpenMS::FeatureDeconvolution::PairsType</a></div><div class="ttdeci">ILPDCWrapper::PairsType PairsType</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_ac7727ba3f3253cf99751a2d64eb92582"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#ac7727ba3f3253cf99751a2d64eb92582">OpenMS::FeatureDeconvolution::potential_adducts_</a></div><div class="ttdeci">MassExplainer::AdductsType potential_adducts_</div><div class="ttdoc">List of adducts used to explain mass differences. </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:148</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a2b382bd00f0bc3e5d06bdfc412428a05"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a2b382bd00f0bc3e5d06bdfc412428a05">OpenMS::FeatureDeconvolution::CoordinateType</a></div><div class="ttdeci">FeatureMapType::FeatureType::CoordinateType CoordinateType</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_ac0c1cb2155ff14cca74fe33ec057ab62"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">OpenMS::FeatureDeconvolution::FeatureType</a></div><div class="ttdeci">Feature FeatureType</div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:66</div></div>
<div class="ttc" id="AdditiveSeries_8C_html_a75145a9f1f2689d0f54565ffbdb1f5d6"><div class="ttname"><a href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a></div><div class="ttdeci">Feature::CoordinateType CoordinateType</div><div class="ttdef"><b>Definition:</b> AdditiveSeries.C:52</div></div>
<div class="ttc" id="classOpenMS_1_1MassExplainer_html_af4f87e770c56cc4f47fd47833add8ba3"><div class="ttname"><a href="classOpenMS_1_1MassExplainer.html#af4f87e770c56cc4f47fd47833add8ba3">OpenMS::MassExplainer::AdductsType</a></div><div class="ttdeci">Adduct::AdductsType AdductsType</div><div class="ttdef"><b>Definition:</b> MassExplainer.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDeconvolution_html_a40b36349add03ea8664fd7b219493a0c"><div class="ttname"><a href="classOpenMS_1_1FeatureDeconvolution.html#a40b36349add03ea8664fd7b219493a0c">OpenMS::FeatureDeconvolution::enable_intensity_filter_</a></div><div class="ttdeci">bool enable_intensity_filter_</div><div class="ttdoc">status of intensity filter for edges </div><div class="ttdef"><b>Definition:</b> FeatureDeconvolution.h:154</div></div>
<div class="ttc" id="classOpenMS_1_1DefaultParamHandler_html"><div class="ttname"><a href="classOpenMS_1_1DefaultParamHandler.html">OpenMS::DefaultParamHandler</a></div><div class="ttdoc">A base class for all classes handling default parameters. </div><div class="ttdef"><b>Definition:</b> DefaultParamHandler.h:90</div></div>
<div class="ttc" id="classOpenMS_1_1ILPDCWrapper_html_a1fa855763e3c516396c47cd9f995cfe7"><div class="ttname"><a href="classOpenMS_1_1ILPDCWrapper.html#a1fa855763e3c516396c47cd9f995cfe7">OpenMS::ILPDCWrapper::PairsType</a></div><div class="ttdeci">std::vector&lt; ChargePair &gt; PairsType</div><div class="ttdef"><b>Definition:</b> ILPDCWrapper.h:51</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map</a></div><div class="ttdoc">Map class based on the STL map (containing serveral convenience functions) </div><div class="ttdef"><b>Definition:</b> Map.h:50</div></div>
<div class="ttc" id="FeatureMap_8h_html"><div class="ttname"><a href="FeatureMap_8h.html">FeatureMap.h</a></div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:13 using doxygen 1.8.5</font></TD>
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