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<a href="FeatureMap_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Chris Bielow $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Marc Sturm, Chris Bielow, Clemens Groepl $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_KERNEL_FEATUREMAP_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_FEATUREMAP_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="Feature_8h.html">OpenMS/KERNEL/Feature.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="DocumentIdentifier_8h.html">OpenMS/METADATA/DocumentIdentifier.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ProteinIdentification_8h.html">OpenMS/METADATA/ProteinIdentification.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="DataProcessing_8h.html">OpenMS/METADATA/DataProcessing.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="RangeManager_8h.html">OpenMS/KERNEL/RangeManager.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="ComparatorUtils_8h.html">OpenMS/KERNEL/ComparatorUtils.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="UniqueIdIndexer_8h.html">OpenMS/CONCEPT/UniqueIdIndexer.h</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <algorithm></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <exception></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html"> 57</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  {</div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7"> 59</a></span>  std::vector<Size> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>; <span class="comment">//< count each state, indexing by BaseFeature::AnnotationState</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#ab8aa0b82ba2750e3ef5922efd36cbb0e"> 61</a></span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#ab8aa0b82ba2750e3ef5922efd36cbb0e">AnnotationStatistics</a>()</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  : <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>(<a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>::SIZE_OF_ANNOTATIONSTATE, 0) <span class="comment">// initialize all with 0</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  {</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  }</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> </div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#a47829c32c89f9eaa565ced7d7a4d0013"> 66</a></span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a47829c32c89f9eaa565ced7d7a4d0013">AnnotationStatistics</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a>& rhs)</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  : <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>(rhs.<a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>)</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  {</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  }</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#aaf743cc4b80448da173eda469fecb431"> 71</a></span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a>& <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#aaf743cc4b80448da173eda469fecb431">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a>& rhs)</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  {</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keywordflow">if</span> (<span class="keyword">this</span> == &rhs) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a> = rhs.<a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  }</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#a16ce1579f055b2a90b1f23c1c53880aa"> 79</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a16ce1579f055b2a90b1f23c1c53880aa">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a>& rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="keywordflow">return</span> <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a> == rhs.<a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>;</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  }</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> </div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="structOpenMS_1_1AnnotationStatistics.html#a94fe90f734fb8b34718c19fbaa44f3b2"> 84</a></span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a>& <a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a94fe90f734fb8b34718c19fbaa44f3b2">operator+=</a>(<a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">BaseFeature::AnnotationState</a> state)</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  {</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  ++<a class="code" href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">states</a>[(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>)state];</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  }</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  };</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  OPENMS_DLLAPI std::ostream & <a class="code" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator<<</a>(std::ostream & os, <span class="keyword">const</span> AnnotationStatistics& ann);</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> FeatureT = Feature></div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html"> 111</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> :</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keyword">private</span> std::vector<FeatureT>,</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><2>,</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a>,</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1UniqueIdInterface.html">UniqueIdInterface</a>,</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a><FeatureMap<FeatureT> ></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  {</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a0aea291cfaf950725ecd637c801a94e7"> 122</a></span>  <span class="keyword">typedef</span> std::vector<FeatureT> <a class="code" href="classOpenMS_1_1FeatureMap.html#a0aea291cfaf950725ecd637c801a94e7">privvec</a>;</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> </div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="comment">// types</span></div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::value_type;</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::iterator;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::const_iterator;</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::size_type;</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::pointer; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::reference; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::const_reference; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keyword">using</span> <span class="keyword">typename</span> privvec::difference_type; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  </div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="comment">// functions</span></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <span class="keyword">using</span> privvec::begin; </div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keyword">using</span> privvec::end; </div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keyword">using</span> privvec::size; </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <span class="keyword">using</span> privvec::resize; <span class="comment">// ConsensusMap, FeatureXMLFile</span></div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="keyword">using</span> privvec::empty; </div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <span class="keyword">using</span> privvec::reserve; </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keyword">using</span> privvec::operator[]; </div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="keyword">using</span> privvec::at; <span class="comment">// UniqueIdIndexer</span></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keyword">using</span> privvec::back; <span class="comment">// FeatureXMLFile</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="keyword">using</span> privvec::push_back; </div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keyword">using</span> privvec::pop_back; <span class="comment">// FeatureXMLFile</span></div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keyword">using</span> privvec::erase; <span class="comment">// source/VISUAL/Spectrum2DCanvas.C 2871, FeatureMap_test 599</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> </div>
<div class="line"><a name="l00151"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a82111d00f99caf4fe1bbb9d4fc0653a7"> 151</a></span>  <span class="keyword">typedef</span> <a class="code" href="classFeatureT.html">FeatureT</a> <a class="code" href="classOpenMS_1_1FeatureMap.html#a82111d00f99caf4fe1bbb9d4fc0653a7">FeatureType</a>;</div>
<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a035217389fa12c02d059ddfb29c459e1"> 152</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager<2></a> <a class="code" href="classOpenMS_1_1FeatureMap.html#a035217389fa12c02d059ddfb29c459e1">RangeManagerType</a>;</div>
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a35aeb240bfe3e56368ea94538ccba743"> 153</a></span>  <span class="keyword">typedef</span> std::vector<FeatureType> <a class="code" href="classOpenMS_1_1FeatureMap.html#a35aeb240bfe3e56368ea94538ccba743">Base</a>;</div>
<div class="line"><a name="l00154"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#ad436ba4f307bb17e3a999bf315125b33"> 154</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::iterator <a class="code" href="classOpenMS_1_1FeatureMap.html#ad436ba4f307bb17e3a999bf315125b33">Iterator</a>;</div>
<div class="line"><a name="l00155"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#ab0b72f785126c7046aa106fc05a8cda4"> 155</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_iterator <a class="code" href="classOpenMS_1_1FeatureMap.html#ab0b72f785126c7046aa106fc05a8cda4">ConstIterator</a>;</div>
<div class="line"><a name="l00156"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#aba21528f2ca3da3a55e0265213b889e7"> 156</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::reverse_iterator <a class="code" href="classOpenMS_1_1FeatureMap.html#aba21528f2ca3da3a55e0265213b889e7">ReverseIterator</a>;</div>
<div class="line"><a name="l00157"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a8858439b94989776fb9148e9c31366ed"> 157</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_reverse_iterator <a class="code" href="classOpenMS_1_1FeatureMap.html#a8858439b94989776fb9148e9c31366ed">ConstReverseIterator</a>;</div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#aa658710632c61cf91f5758f42c9ec39e"> 158</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Feature.html">FeatureType</a> & <a class="code" href="classOpenMS_1_1FeatureMap.html#aa658710632c61cf91f5758f42c9ec39e">Reference</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a37e5073c3f3bedc8a0935b3068b2d15c"> 159</a></span>  <span class="keyword">typedef</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Feature.html">FeatureType</a> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a37e5073c3f3bedc8a0935b3068b2d15c">ConstReference</a>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> </div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a92db7c70991e0a3f133fd337459c769e"> 168</a></span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a92db7c70991e0a3f133fd337459c769e">FeatureMap</a>() :</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a35aeb240bfe3e56368ea94538ccba743">Base</a>(),</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManagerType</a>(),</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a>(),</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html">UniqueIdInterface</a>(),</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a><<a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a><<a class="code" href="classFeatureT.html">FeatureT</a>> >(),</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>(),</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>(),</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>()</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  {}</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> </div>
<div class="line"><a name="l00180"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a9bc138dcbec4ce3a1acb600e84a8b35e"> 180</a></span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a9bc138dcbec4ce3a1acb600e84a8b35e">FeatureMap</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & source) :</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a35aeb240bfe3e56368ea94538ccba743">Base</a>(source),</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManagerType</a>(source),</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a>(source),</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html">UniqueIdInterface</a>(source),</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a><<a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a><<a class="code" href="classFeatureT.html">FeatureT</a>> >(source),</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>(source.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>),</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>(source.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>),</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>(source.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>)</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  {}</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> </div>
<div class="line"><a name="l00192"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a76d43c4e8fc95ce93063baa39d214439"> 192</a></span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a76d43c4e8fc95ce93063baa39d214439">~FeatureMap</a>()</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  {}</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> </div>
<div class="line"><a name="l00197"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a23b5a9e6646cda6ec189c83575a1c770"> 197</a></span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a23b5a9e6646cda6ec189c83575a1c770">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & rhs)</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  {</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordflow">if</span> (&rhs == <span class="keyword">this</span>) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span> </div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  Base::operator=(rhs);</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManagerType::operator=</a>(rhs);</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a9cef699d5e2f6c8c197a1364605923ac">DocumentIdentifier::operator=</a>(rhs);</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html#ae6de54d4aba9057e4cbe43e4ea26f584">UniqueIdInterface::operator=</a>(rhs);</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a> = rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>;</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a> = rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a> = rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span> </div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  }</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00213"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a18cf03155b291a1bda26fbe431431788"> 213</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a18cf03155b291a1bda26fbe431431788">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keywordflow">return</span> std::operator==(*<span class="keyword">this</span>, rhs) &&</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#afd83f7e639b59d37a1ea380d935ec4eb">RangeManagerType::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a75abab7891cf576f294c2878cf00f090">DocumentIdentifier::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html#aa9873e5d82b71944309d5b47110662a9">UniqueIdInterface::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a> == rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a> &&</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a> == rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a> &&</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a> == rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  }</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#af2c6b0c7c830a0bccd31cce45386f3f2"> 225</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#af2c6b0c7c830a0bccd31cce45386f3f2">operator!=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keywordflow">return</span> !(<a class="code" href="classOpenMS_1_1FeatureMap.html#a18cf03155b291a1bda26fbe431431788">operator==</a>(rhs));</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  }</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span> </div>
<div class="line"><a name="l00235"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a2a35c2c990adb9d14958e2ea88995dda"> 235</a></span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> <a class="code" href="classOpenMS_1_1FeatureMap.html#a2a35c2c990adb9d14958e2ea88995dda">operator+</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> tmp(*<span class="keyword">this</span>);</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  tmp += rhs;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="keywordflow">return</span> tmp;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  }</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a6d9d2f709e76acc61c5a869bd4f755c8"> 254</a></span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a6d9d2f709e76acc61c5a869bd4f755c8">operator+=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> & rhs)</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  {</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> empty_map;</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="comment">// reset these:</span></div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManagerType::operator=</a>(empty_map);</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span> </div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordflow">if</span> (!this-><a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a4eb8ec8636a89f575db95a370fd480b6">getIdentifier</a>().empty() || !rhs.<a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a4eb8ec8636a89f575db95a370fd480b6">getIdentifier</a>().empty()) <a class="code" href="LogStream_8h.html#aeb4f36db01bd128c7afeac5889dac311">LOG_INFO</a> << <span class="stringliteral">"DocumentIdentifiers are lost during merge of FeatureMaps\n"</span>;</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a9cef699d5e2f6c8c197a1364605923ac">DocumentIdentifier::operator=</a>(empty_map);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span> </div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html#ae6de54d4aba9057e4cbe43e4ea26f584">UniqueIdInterface::operator=</a>(empty_map);</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span> </div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="comment">// merge these:</span></div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.insert(<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.end(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.begin(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.end());</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.insert(<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.end(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.begin(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.end());</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.insert(<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.end(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.begin(), rhs.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.end());</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="comment">// append features:</span></div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  this->insert(this->end(), rhs.begin(), rhs.end());</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="comment">// todo: check for double entries</span></div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="comment">// features, unassignedpeptides, proteins...</span></div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span> </div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="comment">// consistency</span></div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keywordflow">try</span></div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  {</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer<FeatureMap<FeatureT></a> ><a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">::updateUniqueIdToIndex</a>();</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  }</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keywordflow">catch</span> (<a class="code" href="classOpenMS_1_1Exception_1_1Postcondition.html">Exception::Postcondition</a> <span class="comment">/*&e*/</span>) <span class="comment">// assign new UID's for conflicting entries</span></div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  {</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> replaced_uids = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer<FeatureMap<FeatureT></a> ><a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aadeff4d5c98a90c2b080ccc45a563731">::resolveUniqueIdConflicts</a>();</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <a class="code" href="LogStream_8h.html#aeb4f36db01bd128c7afeac5889dac311">LOG_INFO</a> << <span class="stringliteral">"Replaced "</span> << replaced_uids << <span class="stringliteral">" invalid uniqueID's\n"</span>;</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  }</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span> </div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  }</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a93f1c9f620403aec160d98e83e125502">sortByIntensity</a>(<span class="keywordtype">bool</span> reverse = <span class="keyword">false</span>)</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  {</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <span class="keywordflow">if</span> (reverse)</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  {</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  std::sort(this->begin(), this->end(), <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<span class="keyword">typename</span> FeatureType::IntensityLess()));</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  }</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  {</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  std::sort(this->begin(), this->end(), <span class="keyword">typename</span> FeatureType::IntensityLess());</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  }</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  }</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span> </div>
<div class="line"><a name="l00310"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a86f7b200260209865e730a2e4fcaa628"> 310</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a86f7b200260209865e730a2e4fcaa628">sortByPosition</a>()</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  {</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  std::sort(this->begin(), this->end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">FeatureType::PositionLess</a>());</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  }</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> </div>
<div class="line"><a name="l00316"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a13c4a8ce7f8275728e865728698173e6"> 316</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a13c4a8ce7f8275728e865728698173e6">sortByRT</a>()</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  {</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  std::sort(this->begin(), this->end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1RTLess.html">FeatureType::RTLess</a>());</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> </div>
<div class="line"><a name="l00322"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a604ce6f3380b18acbebda3c1ed14e70c"> 322</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a604ce6f3380b18acbebda3c1ed14e70c">sortByMZ</a>()</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  {</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  std::sort(this->begin(), this->end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1MZLess.html">FeatureType::MZLess</a>());</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  }</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> </div>
<div class="line"><a name="l00328"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a099506e6c3af2ab3e2ad1ed8781e0691"> 328</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a099506e6c3af2ab3e2ad1ed8781e0691">sortByOverallQuality</a>(<span class="keywordtype">bool</span> reverse = <span class="keyword">false</span>)</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  {</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keywordflow">if</span> (reverse)</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  {</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  std::sort(this->begin(), this->end(), <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">FeatureType::OverallQualityLess</a>()));</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  }</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  {</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  std::sort(this->begin(), this->end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">FeatureType::OverallQualityLess</a>());</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  }</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  }</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> </div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> </div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  <span class="comment">// Docu in base class</span></div>
<div class="line"><a name="l00343"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#adda2fd1aa19da6622530d9073fbcf66d"> 343</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>()</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  {</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#a1b01c1c3871aad142893e20d17afc340">updateRanges_</a>(this->begin(), this->end());</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> </div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="comment">//enlarge the range by the convex hull points</span></div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < this->size(); ++i)</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  {</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <a class="code" href="classOpenMS_1_1DBoundingBox.html">DBoundingBox<2></a> box = this->operator[](i).getConvexHull().getBoundingBox();</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="keywordflow">if</span> (!box.<a class="code" href="classOpenMS_1_1DBoundingBox.html#a479432127ee77145cc19d6a2d1590821">isEmpty</a>())</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  {</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <span class="comment">//update RT</span></div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordflow">if</span> (box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>] < this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.minPosition()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>])</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  {</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.setMinX(box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>]);</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  }</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="keywordflow">if</span> (box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>] > this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.maxPosition()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>])</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  {</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.setMaxX(box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>]);</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  }</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="comment">//update m/z</span></div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keywordflow">if</span> (box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>] < this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.minPosition()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>])</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  {</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.setMinY(box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>]);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  }</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">if</span> (box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>] > this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.maxPosition()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>])</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  {</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">pos_range_</a>.setMaxY(box.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>()[<a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>]);</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  }</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  }</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  }</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  }</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span> </div>
<div class="line"><a name="l00377"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a3554cb60a93215ed6c61b257a67efcc3"> 377</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a3554cb60a93215ed6c61b257a67efcc3">swapFeaturesOnly</a>(<a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>& from)</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  {</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="comment">// TODO used by FeatureFinderAlgorithmPicked -- could it also use regular swap?</span></div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  Base::swap(from);</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  </div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="comment">// swap range information (otherwise its false in both maps)</span></div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> tmp;</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  tmp.RangeManagerType::operator=(* this);</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManagerType::operator=</a>(from);</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  from.RangeManagerType::operator=(tmp);</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  }</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a7ade52218357ec67a4f7a6bc71041e85"> 389</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a7ade52218357ec67a4f7a6bc71041e85">swap</a>(<a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>& from)</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  {</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  <span class="comment">// swap features and ranges</span></div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a3554cb60a93215ed6c61b257a67efcc3">swapFeaturesOnly</a>(from);</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="comment">// swap DocumentIdentifier</span></div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <a class="code" href="classOpenMS_1_1DocumentIdentifier.html#af35350b215e234aeb68b5a2d058e9c6f">DocumentIdentifier::swap</a>(from);</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span> </div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  <span class="comment">// swap unique id</span></div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9a9411d34dd0e6318ccc47ccd0c610e3">UniqueIdInterface::swap</a>(from);</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span> </div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  <span class="comment">// swap unique id index</span></div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer<FeatureMap<FeatureT></a> ><a class="code" href="classOpenMS_1_1FeatureMap.html#a7ade52218357ec67a4f7a6bc71041e85">::swap</a>(from);</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span> </div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  <span class="comment">// swap the remaining members</span></div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.swap(from.<a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>);</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.swap(from.<a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>);</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.swap(from.<a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>);</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  }</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> </div>
<div class="line"><a name="l00410"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#acef58bf2531b77d0191c4780739281c6"> 410</a></span>  <span class="keyword">const</span> std::vector<ProteinIdentification> & <a class="code" href="classOpenMS_1_1FeatureMap.html#acef58bf2531b77d0191c4780739281c6">getProteinIdentifications</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>;</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  }</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span> </div>
<div class="line"><a name="l00416"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a606b9b370ed163364cc104c39fe17ae6"> 416</a></span>  std::vector<ProteinIdentification> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a606b9b370ed163364cc104c39fe17ae6">getProteinIdentifications</a>()</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  {</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>;</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  }</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span> </div>
<div class="line"><a name="l00422"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988"> 422</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988">setProteinIdentifications</a>(<span class="keyword">const</span> std::vector<ProteinIdentification> & protein_identifications)</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  {</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a> = protein_identifications;</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  }</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span> </div>
<div class="line"><a name="l00428"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a001ea2eb2a9c05266a69f50594f25604"> 428</a></span>  <span class="keyword">const</span> std::vector<PeptideIdentification> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a001ea2eb2a9c05266a69f50594f25604">getUnassignedPeptideIdentifications</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>;</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  }</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span> </div>
<div class="line"><a name="l00434"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a2a8c76918f1a4ee1929f06c2558f8c97"> 434</a></span>  std::vector<PeptideIdentification> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a2a8c76918f1a4ee1929f06c2558f8c97">getUnassignedPeptideIdentifications</a>()</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  {</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>;</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  }</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span> </div>
<div class="line"><a name="l00440"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b"> 440</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b">setUnassignedPeptideIdentifications</a>(<span class="keyword">const</span> std::vector<PeptideIdentification> & unassigned_peptide_identifications)</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  {</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a> = unassigned_peptide_identifications;</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  }</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span> </div>
<div class="line"><a name="l00446"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#ae131ea2ec923582f86aa9805e72241ad"> 446</a></span>  <span class="keyword">const</span> std::vector<DataProcessing> & <a class="code" href="classOpenMS_1_1FeatureMap.html#ae131ea2ec923582f86aa9805e72241ad">getDataProcessing</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  }</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span> </div>
<div class="line"><a name="l00452"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a960b6da3bf55e40e959653b036fd12a8"> 452</a></span>  std::vector<DataProcessing> & <a class="code" href="classOpenMS_1_1FeatureMap.html#a960b6da3bf55e40e959653b036fd12a8">getDataProcessing</a>()</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  {</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  }</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span> </div>
<div class="line"><a name="l00458"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a8b8822043dbf3e8451ff65ce4403a0e5"> 458</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">setDataProcessing</a>(<span class="keyword">const</span> std::vector<DataProcessing> & processing_method)</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  {</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a> = processing_method;</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  }</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span> </div>
<div class="line"><a name="l00468"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733"> 468</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keywordtype">bool</span> clear_meta_data = <span class="keyword">true</span>)</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  {</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  Base::clear();</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> </div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keywordflow">if</span> (clear_meta_data)</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  {</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  this-><a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a9cef699d5e2f6c8c197a1364605923ac">DocumentIdentifier::operator=</a>(<a class="code" href="classOpenMS_1_1DocumentIdentifier.html#a7fb206677dc6ea82973629409705fd75">DocumentIdentifier</a>()); <span class="comment">// no "clear" method</span></div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  <a class="code" href="classOpenMS_1_1UniqueIdInterface.html#abe2a26e5d4b92e59f5569bed03ee5b7b">clearUniqueId</a>();</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>.clear();</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>.clear();</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>.clear();</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  }</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  }</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span> </div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Type></div>
<div class="line"><a name="l00496"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a2ba4cf095974c86863027d78210dc2fa"> 496</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1FeatureMap.html#a2ba4cf095974c86863027d78210dc2fa">applyMemberFunction</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> (Type::* member_function)())</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  {</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> assignments = 0;</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  assignments += ((*this).*member_function)();</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1FeatureMap.html#ad436ba4f307bb17e3a999bf315125b33">Iterator</a> iter = this->begin(); iter != this->end(); ++iter)</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  {</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  assignments += iter->applyMemberFunction(member_function);</div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  }</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <span class="keywordflow">return</span> assignments;</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  }</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span> </div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Type></div>
<div class="line"><a name="l00509"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#ac4a24ec632c6289210b0db06d7f2af9f"> 509</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1FeatureMap.html#ac4a24ec632c6289210b0db06d7f2af9f">applyMemberFunction</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> (Type::* member_function)() <span class="keyword">const</span>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> assignments = 0;</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  assignments += ((*this).*member_function)();</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1FeatureMap.html#ab0b72f785126c7046aa106fc05a8cda4">ConstIterator</a> iter = this->begin(); iter != this->end(); ++iter)</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  {</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  assignments += iter->applyMemberFunction(member_function);</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  }</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">return</span> assignments;</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  }</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a name="l00520"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a4f40a3d8606e7855a7b3c12620bf9f58"> 520</a></span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a> <a class="code" href="classOpenMS_1_1FeatureMap.html#a4f40a3d8606e7855a7b3c12620bf9f58">getAnnotationStatistics</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  <a class="code" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a> result;</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1FeatureMap.html#ab0b72f785126c7046aa106fc05a8cda4">ConstIterator</a> iter = this->begin(); iter != this->end(); ++iter)</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  {</div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  result += iter->getAnnotationState();</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  }</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <span class="keywordflow">return</span> result;</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  }</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span> </div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span> </div>
<div class="line"><a name="l00533"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f"> 533</a></span>  std::vector<ProteinIdentification> <a class="code" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>;</div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> </div>
<div class="line"><a name="l00536"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c"> 536</a></span>  std::vector<PeptideIdentification> <a class="code" href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>;</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span> </div>
<div class="line"><a name="l00539"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63"> 539</a></span>  std::vector<DataProcessing> <a class="code" href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  };</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span> </div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> FeatureType></div>
<div class="line"><a name="l00544"></a><span class="lineno"><a class="line" href="namespaceOpenMS.html#a20512fd3d9c08770fd2805f00245562d"> 544</a></span>  std::ostream & operator<<(std::ostream & os, const FeatureMap<FeatureType> & map)</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span>  {</div>
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span>  os << <span class="stringliteral">"# -- DFEATUREMAP BEGIN --"</span> << <span class="stringliteral">"\n"</span>;</div>
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  os << <span class="stringliteral">"# POS \tINTENS\tOVALLQ\tCHARGE\tUniqueID"</span> << <span class="stringliteral">"\n"</span>;</div>
<div class="line"><a name="l00548"></a><span class="lineno"> 548</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap<FeatureType>::const_iterator</a> iter = map.begin(); iter != map.end(); ++iter)</div>
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span>  {</div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  os << iter->getPosition() << <span class="charliteral">'\t'</span></div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  << iter->getIntensity() << <span class="charliteral">'\t'</span></div>
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  << iter->getOverallQuality() << <span class="charliteral">'\t'</span></div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  << iter->getCharge() << <span class="charliteral">'\t'</span></div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  << iter->getUniqueId() << <span class="stringliteral">"\n"</span>;</div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  }</div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  os << <span class="stringliteral">"# -- DFEATUREMAP END --"</span> << std::endl;</div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  <span class="keywordflow">return</span> os;</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  }</div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span> </div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span> </div>
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span> </div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span> <span class="preprocessor">#endif // OPENMS_KERNEL_DFEATUREMAP_H</span></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_ab0b72f785126c7046aa106fc05a8cda4"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#ab0b72f785126c7046aa106fc05a8cda4">OpenMS::FeatureMap::ConstIterator</a></div><div class="ttdeci">Base::const_iterator ConstIterator</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:155</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a604ce6f3380b18acbebda3c1ed14e70c"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a604ce6f3380b18acbebda3c1ed14e70c">OpenMS::FeatureMap::sortByMZ</a></div><div class="ttdeci">void sortByMZ()</div><div class="ttdoc">Sort features by m/z position. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:322</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a13c4a8ce7f8275728e865728698173e6"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a13c4a8ce7f8275728e865728698173e6">OpenMS::FeatureMap::sortByRT</a></div><div class="ttdeci">void sortByRT()</div><div class="ttdoc">Sort features by RT position. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:316</div></div>
<div class="ttc" id="UniqueIdIndexer_8h_html"><div class="ttname"><a href="UniqueIdIndexer_8h.html">UniqueIdIndexer.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_a8e85bf1f139b42344795f126aa6bf1f7"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#a8e85bf1f139b42344795f126aa6bf1f7">OpenMS::AnnotationStatistics::states</a></div><div class="ttdeci">std::vector< Size > states</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a92db7c70991e0a3f133fd337459c769e"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a92db7c70991e0a3f133fd337459c769e">OpenMS::FeatureMap::FeatureMap</a></div><div class="ttdeci">FeatureMap()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:168</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a606b9b370ed163364cc104c39fe17ae6"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a606b9b370ed163364cc104c39fe17ae6">OpenMS::FeatureMap::getProteinIdentifications</a></div><div class="ttdeci">std::vector< ProteinIdentification > & getProteinIdentifications()</div><div class="ttdoc">mutable access to the protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:416</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_ab5f4f0d11b0ceff54d8664d1cce7fd8a"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">OpenMS::RangeManager< 2 >::pos_range_</a></div><div class="ttdeci">PositionRangeType pos_range_</div><div class="ttdoc">Position range (D-dimensional) </div><div class="ttdef"><b>Definition:</b> RangeManager.h:151</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_acef58bf2531b77d0191c4780739281c6"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#acef58bf2531b77d0191c4780739281c6">OpenMS::FeatureMap::getProteinIdentifications</a></div><div class="ttdeci">const std::vector< ProteinIdentification > & getProteinIdentifications() const </div><div class="ttdoc">non-mutable access to the protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:410</div></div>
<div class="ttc" id="LogStream_8h_html_aeb4f36db01bd128c7afeac5889dac311"><div class="ttname"><a href="LogStream_8h.html#aeb4f36db01bd128c7afeac5889dac311">LOG_INFO</a></div><div class="ttdeci">#define LOG_INFO</div><div class="ttdoc">Macro if a information, e.g. a status should be reported. </div><div class="ttdef"><b>Definition:</b> LogStream.h:455</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a4f40a3d8606e7855a7b3c12620bf9f58"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a4f40a3d8606e7855a7b3c12620bf9f58">OpenMS::FeatureMap::getAnnotationStatistics</a></div><div class="ttdeci">AnnotationStatistics getAnnotationStatistics() const </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:520</div></div>
<div class="ttc" id="DocumentIdentifier_8h_html"><div class="ttname"><a href="DocumentIdentifier_8h.html">DocumentIdentifier.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a6d9d2f709e76acc61c5a869bd4f755c8"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a6d9d2f709e76acc61c5a869bd4f755c8">OpenMS::FeatureMap::operator+=</a></div><div class="ttdeci">FeatureMap & operator+=(const FeatureMap &rhs)</div><div class="ttdoc">Add one feature map to another. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:254</div></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">OpenMS::BaseFeature::QualityLess</a></div><div class="ttdoc">Compare by quality. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a2a8c76918f1a4ee1929f06c2558f8c97"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a2a8c76918f1a4ee1929f06c2558f8c97">OpenMS::FeatureMap::getUnassignedPeptideIdentifications</a></div><div class="ttdeci">std::vector< PeptideIdentification > & getUnassignedPeptideIdentifications()</div><div class="ttdoc">mutable access to the unassigned peptide identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:434</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">OpenMS::Peak2D::RT</a></div><div class="ttdoc">Retention time dimension id (0 if used as a const int) </div><div class="ttdef"><b>Definition:</b> Peak2D.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a7ade52218357ec67a4f7a6bc71041e85"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a7ade52218357ec67a4f7a6bc71041e85">OpenMS::FeatureMap::swap</a></div><div class="ttdeci">void swap(FeatureMap &from)</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:389</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap</a></div><div class="ttdoc">A container for features. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a001ea2eb2a9c05266a69f50594f25604"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a001ea2eb2a9c05266a69f50594f25604">OpenMS::FeatureMap::getUnassignedPeptideIdentifications</a></div><div class="ttdeci">const std::vector< PeptideIdentification > & getUnassignedPeptideIdentifications() const </div><div class="ttdoc">non-mutable access to the unassigned peptide identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:428</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_a47829c32c89f9eaa565ced7d7a4d0013"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#a47829c32c89f9eaa565ced7d7a4d0013">OpenMS::AnnotationStatistics::AnnotationStatistics</a></div><div class="ttdeci">AnnotationStatistics(const AnnotationStatistics &rhs)</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_aba21528f2ca3da3a55e0265213b889e7"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#aba21528f2ca3da3a55e0265213b889e7">OpenMS::FeatureMap::ReverseIterator</a></div><div class="ttdeci">Base::reverse_iterator ReverseIterator</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:156</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a18cf03155b291a1bda26fbe431431788"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a18cf03155b291a1bda26fbe431431788">OpenMS::FeatureMap::operator==</a></div><div class="ttdeci">bool operator==(const FeatureMap &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:213</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74df8b74439d1f76961c8d987fb074fd"><div class="ttname"><a href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">OpenMS::operator<<</a></div><div class="ttdeci">std::ostream & operator<<(std::ostream &os, const ItraqQuantifier::ItraqQuantifierStats &stats)</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74e80d32be63268d8a46039297e18cc6"><div class="ttname"><a href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">OpenMS::reverseComparator</a></div><div class="ttdeci">ReverseComparator< Cmp > reverseComparator(Cmp const &cmp)</div><div class="ttdoc">Make-function to create a ReverseComparator from another comparator without the need to specify the t...</div><div class="ttdef"><b>Definition:</b> ComparatorUtils.h:261</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">OpenMS::Peak2D::MZ</a></div><div class="ttdoc">Mass-to-charge dimension id (1 if used as a const int) </div><div class="ttdef"><b>Definition:</b> Peak2D.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_aa658710632c61cf91f5758f42c9ec39e"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#aa658710632c61cf91f5758f42c9ec39e">OpenMS::FeatureMap::Reference</a></div><div class="ttdeci">FeatureType & Reference</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:158</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_a94fe90f734fb8b34718c19fbaa44f3b2"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#a94fe90f734fb8b34718c19fbaa44f3b2">OpenMS::AnnotationStatistics::operator+=</a></div><div class="ttdeci">AnnotationStatistics & operator+=(BaseFeature::AnnotationState state)</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a2ba4cf095974c86863027d78210dc2fa"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a2ba4cf095974c86863027d78210dc2fa">OpenMS::FeatureMap::applyMemberFunction</a></div><div class="ttdeci">Size applyMemberFunction(Size(Type::*member_function)())</div><div class="ttdoc">Applies a member function of Type to the container itself and all features (including subordinates)...</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:496</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a960b6da3bf55e40e959653b036fd12a8"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a960b6da3bf55e40e959653b036fd12a8">OpenMS::FeatureMap::getDataProcessing</a></div><div class="ttdeci">std::vector< DataProcessing > & getDataProcessing()</div><div class="ttdoc">returns a mutable reference to the description of the applied data processing </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:452</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_afd83f7e639b59d37a1ea380d935ec4eb"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#afd83f7e639b59d37a1ea380d935ec4eb">OpenMS::RangeManager< 2 >::operator==</a></div><div class="ttdeci">bool operator==(const RangeManager &rhs) const</div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:88</div></div>
<div class="ttc" id="DataProcessing_8h_html"><div class="ttname"><a href="DataProcessing_8h.html">DataProcessing.h</a></div></div>
<div class="ttc" id="Feature_8h_html"><div class="ttname"><a href="Feature_8h.html">Feature.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_abe2a26e5d4b92e59f5569bed03ee5b7b"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#abe2a26e5d4b92e59f5569bed03ee5b7b">OpenMS::UniqueIdInterface::clearUniqueId</a></div><div class="ttdeci">Size clearUniqueId()</div><div class="ttdoc">Clear the unique id. The new unique id will be invalid. Returns 1 if the unique id was changed...</div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a8858439b94989776fb9148e9c31366ed"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a8858439b94989776fb9148e9c31366ed">OpenMS::FeatureMap::ConstReverseIterator</a></div><div class="ttdeci">Base::const_reverse_iterator ConstReverseIterator</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:157</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html">OpenMS::BaseFeature</a></div><div class="ttdoc">A basic LC-MS feature. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a8b8822043dbf3e8451ff65ce4403a0e5"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">OpenMS::FeatureMap::setDataProcessing</a></div><div class="ttdeci">void setDataProcessing(const std::vector< DataProcessing > &processing_method)</div><div class="ttdoc">sets the description of the applied data processing </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:458</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1PositionLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1PositionLess.html">OpenMS::Peak2D::PositionLess</a></div><div class="ttdoc">Comparator by position. Lexicographical comparison (first RT then m/z) is done. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:324</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_ae131ea2ec923582f86aa9805e72241ad"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#ae131ea2ec923582f86aa9805e72241ad">OpenMS::FeatureMap::getDataProcessing</a></div><div class="ttdeci">const std::vector< DataProcessing > & getDataProcessing() const </div><div class="ttdoc">returns a const reference to the description of the applied data processing </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:446</div></div>
<div class="ttc" id="ComparatorUtils_8h_html"><div class="ttname"><a href="ComparatorUtils_8h.html">ComparatorUtils.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a37e5073c3f3bedc8a0935b3068b2d15c"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a37e5073c3f3bedc8a0935b3068b2d15c">OpenMS::FeatureMap::ConstReference</a></div><div class="ttdeci">const FeatureType & ConstReference</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:159</div></div>
<div class="ttc" id="ProteinIdentification_8h_html"><div class="ttname"><a href="ProteinIdentification_8h.html">ProteinIdentification.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a035217389fa12c02d059ddfb29c459e1"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a035217389fa12c02d059ddfb29c459e1">OpenMS::FeatureMap::RangeManagerType</a></div><div class="ttdeci">RangeManager< 2 > RangeManagerType</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a6d85ac28bb82da988383fd19b8504988"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988">OpenMS::FeatureMap::setProteinIdentifications</a></div><div class="ttdeci">void setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)</div><div class="ttdoc">sets the protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:422</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html_a75abab7891cf576f294c2878cf00f090"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html#a75abab7891cf576f294c2878cf00f090">OpenMS::DocumentIdentifier::operator==</a></div><div class="ttdeci">bool operator==(const DocumentIdentifier &rhs) const </div><div class="ttdoc">Equality operator. </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a23b5a9e6646cda6ec189c83575a1c770"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a23b5a9e6646cda6ec189c83575a1c770">OpenMS::FeatureMap::operator=</a></div><div class="ttdeci">FeatureMap & operator=(const FeatureMap &rhs)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:197</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_ad808bc540f1cba8049a23bec074eed64"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">OpenMS::RangeManager< 2 >::operator=</a></div><div class="ttdeci">RangeManager & operator=(const RangeManager &rhs)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_af2c6b0c7c830a0bccd31cce45386f3f2"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#af2c6b0c7c830a0bccd31cce45386f3f2">OpenMS::FeatureMap::operator!=</a></div><div class="ttdeci">bool operator!=(const FeatureMap &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:225</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a2a35c2c990adb9d14958e2ea88995dda"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a2a35c2c990adb9d14958e2ea88995dda">OpenMS::FeatureMap::operator+</a></div><div class="ttdeci">FeatureMap operator+(const FeatureMap &rhs) const </div><div class="ttdoc">Joins two feature maps. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:235</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_aadeff4d5c98a90c2b080ccc45a563731"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#aadeff4d5c98a90c2b080ccc45a563731">OpenMS::UniqueIdIndexer< FeatureMap< FeatureT > >::resolveUniqueIdConflicts</a></div><div class="ttdeci">Size resolveUniqueIdConflicts()</div><div class="ttdoc">Assign new UID&#39;s to doubly occurring UID&#39;s. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_ad9d205c1045bb7a3b829070054db706f"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">OpenMS::FeatureMap::protein_identifications_</a></div><div class="ttdeci">std::vector< ProteinIdentification > protein_identifications_</div><div class="ttdoc">protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:533</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_aaa3d5efb96ade4c8ce2c8e216a73dcd1"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">OpenMS::RangeManager< 2 >::clearRanges</a></div><div class="ttdeci">void clearRanges()</div><div class="ttdoc">Resets the ranges. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a86f7b200260209865e730a2e4fcaa628"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a86f7b200260209865e730a2e4fcaa628">OpenMS::FeatureMap::sortByPosition</a></div><div class="ttdeci">void sortByPosition()</div><div class="ttdoc">Sort features by position. Lexicographical comparison (first RT then m/z) is done. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:310</div></div>
<div class="ttc" id="classFeatureT_html"><div class="ttname"><a href="classFeatureT.html">FeatureT</a></div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_a025daa49d78f1a6e015c31c1bc198c31"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">OpenMS::UniqueIdIndexer< FeatureMap< FeatureT > >::updateUniqueIdToIndex</a></div><div class="ttdeci">void updateUniqueIdToIndex() const</div><div class="ttdoc">Updates the hash map from unique id to index. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html">OpenMS::UniqueIdIndexer</a></div><div class="ttdoc">A base class for random access containers for classes derived from UniqueIdInterface that adds functi...</div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_ad436ba4f307bb17e3a999bf315125b33"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#ad436ba4f307bb17e3a999bf315125b33">OpenMS::FeatureMap::Iterator</a></div><div class="ttdeci">Base::iterator Iterator</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:154</div></div>
<div class="ttc" id="RangeManager_8h_html"><div class="ttname"><a href="RangeManager_8h.html">RangeManager.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a9bc138dcbec4ce3a1acb600e84a8b35e"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a9bc138dcbec4ce3a1acb600e84a8b35e">OpenMS::FeatureMap::FeatureMap</a></div><div class="ttdeci">FeatureMap(const FeatureMap &source)</div><div class="ttdoc">Copy constructor. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:180</div></div>
<div class="ttc" id="classOpenMS_1_1Feature_html"><div class="ttname"><a href="classOpenMS_1_1Feature.html">OpenMS::Feature</a></div><div class="ttdoc">An LC-MS feature. </div><div class="ttdef"><b>Definition:</b> Feature.h:66</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_a16ce1579f055b2a90b1f23c1c53880aa"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#a16ce1579f055b2a90b1f23c1c53880aa">OpenMS::AnnotationStatistics::operator==</a></div><div class="ttdeci">bool operator==(const AnnotationStatistics &rhs) const </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_aab0c90b6e3119dc1ebfe70c37becce6c"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">OpenMS::FeatureMap::unassigned_peptide_identifications_</a></div><div class="ttdeci">std::vector< PeptideIdentification > unassigned_peptide_identifications_</div><div class="ttdoc">peptide identifications not matched to a specific feature </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:536</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html">OpenMS::UniqueIdInterface</a></div><div class="ttdoc">A base class defining a common interface for all classes having a unique id. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:51</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1RTLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1RTLess.html">OpenMS::Peak2D::RTLess</a></div><div class="ttdoc">Comparator by RT position. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:272</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a35aeb240bfe3e56368ea94538ccba743"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a35aeb240bfe3e56368ea94538ccba743">OpenMS::FeatureMap::Base</a></div><div class="ttdeci">std::vector< FeatureType > Base</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:153</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a3554cb60a93215ed6c61b257a67efcc3"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a3554cb60a93215ed6c61b257a67efcc3">OpenMS::FeatureMap::swapFeaturesOnly</a></div><div class="ttdeci">void swapFeaturesOnly(FeatureMap &from)</div><div class="ttdoc">Swaps the feature content (plus its range information) of this map with the content of from...</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:377</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a50a6b2cdb2828e1f3e29c0096fd4ef63"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">OpenMS::FeatureMap::data_processing_</a></div><div class="ttdeci">std::vector< DataProcessing > data_processing_</div><div class="ttdoc">applied data processing </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:539</div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_a84873a73e9e222a574dccff3bc2d860e"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">OpenMS::Internal::DIntervalBase::minPosition</a></div><div class="ttdeci">PositionType const & minPosition() const </div><div class="ttdoc">Accessor to minimum position. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_adda2fd1aa19da6622530d9073fbcf66d"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#adda2fd1aa19da6622530d9073fbcf66d">OpenMS::FeatureMap::updateRanges</a></div><div class="ttdeci">void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:343</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">OpenMS::BaseFeature::AnnotationState</a></div><div class="ttdeci">AnnotationState</div><div class="ttdoc">state of identification, use getIDState() to query it </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html_af35350b215e234aeb68b5a2d058e9c6f"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html#af35350b215e234aeb68b5a2d058e9c6f">OpenMS::DocumentIdentifier::swap</a></div><div class="ttdeci">void swap(DocumentIdentifier &from)</div><div class="ttdoc">exchange content with from </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a76d43c4e8fc95ce93063baa39d214439"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a76d43c4e8fc95ce93063baa39d214439">OpenMS::FeatureMap::~FeatureMap</a></div><div class="ttdeci">virtual ~FeatureMap()</div><div class="ttdoc">Destructor. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:192</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html_a7fb206677dc6ea82973629409705fd75"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html#a7fb206677dc6ea82973629409705fd75">OpenMS::DocumentIdentifier::DocumentIdentifier</a></div><div class="ttdeci">DocumentIdentifier()</div><div class="ttdoc">default constructor </div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_a9a9411d34dd0e6318ccc47ccd0c610e3"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#a9a9411d34dd0e6318ccc47ccd0c610e3">OpenMS::UniqueIdInterface::swap</a></div><div class="ttdeci">void swap(UniqueIdInterface &from)</div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:128</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a099506e6c3af2ab3e2ad1ed8781e0691"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a099506e6c3af2ab3e2ad1ed8781e0691">OpenMS::FeatureMap::sortByOverallQuality</a></div><div class="ttdeci">void sortByOverallQuality(bool reverse=false)</div><div class="ttdoc">Sort features by ascending overall quality. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:328</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_ae6de54d4aba9057e4cbe43e4ea26f584"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#ae6de54d4aba9057e4cbe43e4ea26f584">OpenMS::UniqueIdInterface::operator=</a></div><div class="ttdeci">UniqueIdInterface & operator=(UniqueIdInterface const &rhs)</div><div class="ttdoc">Assignment operator - copies the unique id. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html_a4eb8ec8636a89f575db95a370fd480b6"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html#a4eb8ec8636a89f575db95a370fd480b6">OpenMS::DocumentIdentifier::getIdentifier</a></div><div class="ttdeci">const String & getIdentifier() const </div><div class="ttdoc">retrieve document identifier (e.g. an LSID) </div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_ac093fc547d9a49aef9950f6cd92b5588"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">OpenMS::Internal::DIntervalBase::maxPosition</a></div><div class="ttdeci">PositionType const & maxPosition() const </div><div class="ttdoc">Accessor to maximum position. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_aa9873e5d82b71944309d5b47110662a9"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#aa9873e5d82b71944309d5b47110662a9">OpenMS::UniqueIdInterface::operator==</a></div><div class="ttdeci">bool operator==(UniqueIdInterface const &rhs) const </div><div class="ttdoc">Equality comparison operator - the unique ids must be equal (!) </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1Postcondition_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1Postcondition.html">OpenMS::Exception::Postcondition</a></div><div class="ttdoc">Postcondition failed exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:181</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html">OpenMS::AnnotationStatistics</a></div><div class="ttdef"><b>Definition:</b> FeatureMap.h:57</div></div>
<div class="ttc" id="classOpenMS_1_1DBoundingBox_html"><div class="ttname"><a href="classOpenMS_1_1DBoundingBox.html">OpenMS::DBoundingBox</a></div><div class="ttdoc">A D-dimensional bounding box. </div><div class="ttdef"><b>Definition:</b> DBoundingBox.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_ac4a24ec632c6289210b0db06d7f2af9f"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#ac4a24ec632c6289210b0db06d7f2af9f">OpenMS::FeatureMap::applyMemberFunction</a></div><div class="ttdeci">Size applyMemberFunction(Size(Type::*member_function)() const) const </div><div class="ttdoc">The &quot;const&quot; variant. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:509</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_a1b01c1c3871aad142893e20d17afc340"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#a1b01c1c3871aad142893e20d17afc340">OpenMS::RangeManager< 2 >::updateRanges_</a></div><div class="ttdeci">void updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end)</div><div class="ttdoc">Updates the range using data points in the iterator range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:155</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html">OpenMS::RangeManager</a></div><div class="ttdoc">Handles the managment of a position and intensity range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:48</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_aaf743cc4b80448da173eda469fecb431"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#aaf743cc4b80448da173eda469fecb431">OpenMS::AnnotationStatistics::operator=</a></div><div class="ttdeci">AnnotationStatistics & operator=(const AnnotationStatistics &rhs)</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1DBoundingBox_html_a479432127ee77145cc19d6a2d1590821"><div class="ttname"><a href="classOpenMS_1_1DBoundingBox.html#a479432127ee77145cc19d6a2d1590821">OpenMS::DBoundingBox::isEmpty</a></div><div class="ttdeci">bool isEmpty() const </div><div class="ttdoc">Test if bounding box is empty. </div><div class="ttdef"><b>Definition:</b> DBoundingBox.h:192</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html_a9cef699d5e2f6c8c197a1364605923ac"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html#a9cef699d5e2f6c8c197a1364605923ac">OpenMS::DocumentIdentifier::operator=</a></div><div class="ttdeci">DocumentIdentifier & operator=(const DocumentIdentifier &source)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a93f1c9f620403aec160d98e83e125502"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a93f1c9f620403aec160d98e83e125502">OpenMS::FeatureMap::sortByIntensity</a></div><div class="ttdeci">void sortByIntensity(bool reverse=false)</div><div class="ttdoc">Sorts the peaks according to ascending intensity. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:297</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1MZLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1MZLess.html">OpenMS::Peak2D::MZLess</a></div><div class="ttdoc">Comparator by m/z position. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:298</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a7b5660c6199fa9d5fef65974c7e3e733"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733">OpenMS::FeatureMap::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data=true)</div><div class="ttdoc">Clears all data and meta data. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:468</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html">OpenMS::DocumentIdentifier</a></div><div class="ttdoc">Manage source document information. </div><div class="ttdef"><b>Definition:</b> DocumentIdentifier.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a0aea291cfaf950725ecd637c801a94e7"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a0aea291cfaf950725ecd637c801a94e7">OpenMS::FeatureMap::privvec</a></div><div class="ttdeci">std::vector< FeatureT > privvec</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:122</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a37631ce8db66a5227a34ae2e40b22b8b"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b">OpenMS::FeatureMap::setUnassignedPeptideIdentifications</a></div><div class="ttdeci">void setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)</div><div class="ttdoc">sets the unassigned peptide identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:440</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a82111d00f99caf4fe1bbb9d4fc0653a7"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a82111d00f99caf4fe1bbb9d4fc0653a7">OpenMS::FeatureMap::FeatureType</a></div><div class="ttdeci">FeatureT FeatureType</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:151</div></div>
<div class="ttc" id="structOpenMS_1_1AnnotationStatistics_html_ab8aa0b82ba2750e3ef5922efd36cbb0e"><div class="ttname"><a href="structOpenMS_1_1AnnotationStatistics.html#ab8aa0b82ba2750e3ef5922efd36cbb0e">OpenMS::AnnotationStatistics::AnnotationStatistics</a></div><div class="ttdeci">AnnotationStatistics()</div><div class="ttdef"><b>Definition:</b> FeatureMap.h:61</div></div>
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