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<a href="FileTypes_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Stephan Aiche $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Andreas Bertsch, Marc Sturm, Stephan Aiche $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_FORMAT_FILETYPES_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_FORMAT_FILETYPES_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;OpenMS/config.h&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;{</div>
<div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html">   54</a></span>&#160;  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1FileTypes.html">FileTypes</a></div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;  {</div>
<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <span class="comment">//NOTE: if you change/add something here, do not forget to change FileTyoes::initializeMap_</span></div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;</div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7">   59</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a></div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    {</div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a6ce26a62afab55d7606ad4e92428b30c">   61</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a6ce26a62afab55d7606ad4e92428b30c">UNKNOWN</a>,            </div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad8654d9b2a9c38ece897bfbdd8152214">   62</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad8654d9b2a9c38ece897bfbdd8152214">DTA</a>,                </div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a66c2f5cd90913752f565186657e85d84">   63</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a66c2f5cd90913752f565186657e85d84">DTA2D</a>,              </div>
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<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a8afea1d83fb17a85640f67f9b35b64d2">   75</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a8afea1d83fb17a85640f67f9b35b64d2">PEPXML</a>,             </div>
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<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ab0de7dd1c1bb56f18cfeebc37d3fcabd">   83</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ab0de7dd1c1bb56f18cfeebc37d3fcabd">OMSSAXML</a>,           </div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ada57d17402b06d94ea28ccf9c4cdc4c1">   84</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ada57d17402b06d94ea28ccf9c4cdc4c1">MASCOTXML</a>,          </div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a842c5fc4bbe3f780e57c76d1a3cafe9f">   85</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a842c5fc4bbe3f780e57c76d1a3cafe9f">PNG</a>,                </div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87b48e9729223183349bdfb171076285">   86</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87b48e9729223183349bdfb171076285">XMASS</a>,              </div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a9ceeac5c1982a8aeeb7518cb4a488935">   87</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a9ceeac5c1982a8aeeb7518cb4a488935">TSV</a>,                </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87ac627b0f0c019e05a735e1a00b861d">   88</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87ac627b0f0c019e05a735e1a00b861d">PEPLIST</a>,            </div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a3b6e7ce6825dfd023976b1084ff7ae4f">   89</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a3b6e7ce6825dfd023976b1084ff7ae4f">HARDKLOER</a>,          </div>
<div class="line"><a name="l00090"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a55c4004ffd908d6e6ec96028e90916d0">   90</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a55c4004ffd908d6e6ec96028e90916d0">KROENIK</a>,            </div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a1198e682627a824269ab077c0101247c">   91</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a1198e682627a824269ab077c0101247c">FASTA</a>,              </div>
<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7abe621dad356e29d7d61bb358f8201019">   92</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7abe621dad356e29d7d61bb358f8201019">EDTA</a>,               </div>
<div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a2b10dde645e767164fc3de2ddbf14399">   93</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a2b10dde645e767164fc3de2ddbf14399">CSV</a>,                </div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a523681f1477727482b38d5181ecb35d4">   94</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a523681f1477727482b38d5181ecb35d4">TXT</a>,                </div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7afa15b53779eca4b450b4cf7d704994dc">   95</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7afa15b53779eca4b450b4cf7d704994dc">OBO</a>,                </div>
<div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7acf2914f9bd6c3578d3de0b6b66c7d66b">   96</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7acf2914f9bd6c3578d3de0b6b66c7d66b">HTML</a>,               </div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a60018cf01f907998778170cb8db31c99">   97</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a60018cf01f907998778170cb8db31c99">XML</a>,                </div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad653ca4a37a3db780dc25e18692a772e">   98</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad653ca4a37a3db780dc25e18692a772e">ANALYSISXML</a>,        </div>
<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a82c507dadc54c6d19e4304b8bb53b33f">   99</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a82c507dadc54c6d19e4304b8bb53b33f">XSD</a>,                </div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a487f7b120d7ed4b4ff59fedf8e25b140">  100</a></span>&#160;      <a class="code" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a487f7b120d7ed4b4ff59fedf8e25b140">PSQ</a>,                </div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a441c9a986459d5abed57acdcb0899409">  101</a></span>&#160;      SIZE_OF_TYPE        </div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    };</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    <span class="keyword">static</span> <a class="code" href="classOpenMS_1_1String.html">String</a> typeToName(Type type);</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <span class="keyword">static</span> <a class="code" href="classOpenMS_1_1String.html">String</a> typeToMZML(Type type);</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    <span class="keyword">static</span> Type nameToType(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>&amp; name);</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a0bb9235aab9c4109f02500592f5b7d0d">  115</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> std::map&lt;Type, String&gt; <a class="code" href="structOpenMS_1_1FileTypes.html#a0bb9235aab9c4109f02500592f5b7d0d">name_of_types_</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;    </div>
<div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FileTypes.html#a6fc6acb8fb3a8bc622473577782a882e">  118</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> std::map&lt;Type, String&gt; <a class="code" href="structOpenMS_1_1FileTypes.html#a6fc6acb8fb3a8bc622473577782a882e">name_of_MZMLtypes_</a>;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;    <span class="keyword">static</span> std::map&lt;Type, String&gt; initializeMap_();</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <span class="keyword">static</span> std::map&lt;Type, String&gt; initializeMZMLMap_();</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;  };</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;} <span class="comment">//namespace OpenMS</span></div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;<span class="preprocessor">#endif //OPENMS_FORMAT_FILETYPES_H</span></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ac3c9fdd077f68cc2ba3d489ffe438875"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ac3c9fdd077f68cc2ba3d489ffe438875">OpenMS::FileTypes::TOPPAS</a></div><div class="ttdoc">OpenMS parameters file with workflow information (.toppas) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:71</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7">OpenMS::FileTypes::Type</a></div><div class="ttdeci">Type</div><div class="ttdoc">Actual file types enum. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:59</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a9ceeac5c1982a8aeeb7518cb4a488935"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a9ceeac5c1982a8aeeb7518cb4a488935">OpenMS::FileTypes::TSV</a></div><div class="ttdoc">msInspect file (.tsv) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:87</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a53b42f0b1a0eb8bb3ae5167e86002bfb"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a53b42f0b1a0eb8bb3ae5167e86002bfb">OpenMS::FileTypes::MSP</a></div><div class="ttdoc">NIST spectra library file format (.msp) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:82</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ac59ebe001fb1923baf25b050436a5f15"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ac59ebe001fb1923baf25b050436a5f15">OpenMS::FileTypes::MS2</a></div><div class="ttdoc">MS2 file (.ms2) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:74</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a82c507dadc54c6d19e4304b8bb53b33f"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a82c507dadc54c6d19e4304b8bb53b33f">OpenMS::FileTypes::XSD</a></div><div class="ttdoc">XSD schema format. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:99</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a1198e682627a824269ab077c0101247c"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a1198e682627a824269ab077c0101247c">OpenMS::FileTypes::FASTA</a></div><div class="ttdoc">FASTA file (.fasta) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:91</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ab11f34894c9d7062f12a006a68c52859"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ab11f34894c9d7062f12a006a68c52859">OpenMS::FileTypes::IDXML</a></div><div class="ttdoc">OpenMS identification format (.idXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:67</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ae5b2d8f7eb59b2fc050e6bc3c1cba802"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ae5b2d8f7eb59b2fc050e6bc3c1cba802">OpenMS::FileTypes::MZDATA</a></div><div class="ttdoc">MzData file (.mzData) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:64</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a487f7b120d7ed4b4ff59fedf8e25b140"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a487f7b120d7ed4b4ff59fedf8e25b140">OpenMS::FileTypes::PSQ</a></div><div class="ttdoc">NCBI binary blast db. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:100</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a2b10dde645e767164fc3de2ddbf14399"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a2b10dde645e767164fc3de2ddbf14399">OpenMS::FileTypes::CSV</a></div><div class="ttdoc">general comma separated files format (might also be tab or space separated!!!), data should be regula...</div><div class="ttdef"><b>Definition:</b> FileTypes.h:93</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a842c5fc4bbe3f780e57c76d1a3cafe9f"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a842c5fc4bbe3f780e57c76d1a3cafe9f">OpenMS::FileTypes::PNG</a></div><div class="ttdoc">Portable Network Graphics (.png) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:85</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a87ac627b0f0c019e05a735e1a00b861d"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87ac627b0f0c019e05a735e1a00b861d">OpenMS::FileTypes::PEPLIST</a></div><div class="ttdoc">specArray file (.peplist) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:88</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html">OpenMS::FileTypes</a></div><div class="ttdoc">Centralizes the file types recognized by FileHandler. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:54</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a2161ead3fb24f3a51fb19e32f4288d86"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a2161ead3fb24f3a51fb19e32f4288d86">OpenMS::FileTypes::MZQUANTML</a></div><div class="ttdoc">mzQuantML (HUPO PSI AnalysisXML followup format) (.mzq) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:78</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a7419287729941a7a7717defda1f6b354"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a7419287729941a7a7717defda1f6b354">OpenMS::FileTypes::CONSENSUSXML</a></div><div class="ttdoc">OpenMS consensus map format (.consensusXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:68</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ab0de7dd1c1bb56f18cfeebc37d3fcabd"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ab0de7dd1c1bb56f18cfeebc37d3fcabd">OpenMS::FileTypes::OMSSAXML</a></div><div class="ttdoc">OMSSA XML file format for peptide identifications (.xml) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:83</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ad653ca4a37a3db780dc25e18692a772e"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad653ca4a37a3db780dc25e18692a772e">OpenMS::FileTypes::ANALYSISXML</a></div><div class="ttdoc">analysisXML format </div><div class="ttdef"><b>Definition:</b> FileTypes.h:98</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ada57d17402b06d94ea28ccf9c4cdc4c1"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ada57d17402b06d94ea28ccf9c4cdc4c1">OpenMS::FileTypes::MASCOTXML</a></div><div class="ttdoc">Mascot XML file format for peptide identifications (.xml) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:84</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7abe621dad356e29d7d61bb358f8201019"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7abe621dad356e29d7d61bb358f8201019">OpenMS::FileTypes::EDTA</a></div><div class="ttdoc">enhanced comma separated files (RT, m/z, Intensity, [meta]) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:92</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a81071dd63505b98ae0a0ebe8c67a8543"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a81071dd63505b98ae0a0ebe8c67a8543">OpenMS::FileTypes::PROTXML</a></div><div class="ttdoc">TPP protXML file (.protXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:76</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a6ce26a62afab55d7606ad4e92428b30c"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a6ce26a62afab55d7606ad4e92428b30c">OpenMS::FileTypes::UNKNOWN</a></div><div class="ttdoc">Unknown file extension. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:61</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a17bf484ac6de6611479496206fd7b49a"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a17bf484ac6de6611479496206fd7b49a">OpenMS::FileTypes::MZIDENTML</a></div><div class="ttdoc">mzIdentML (HUPO PSI AnalysisXML followup format) (.mzid) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:77</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ad8654d9b2a9c38ece897bfbdd8152214"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad8654d9b2a9c38ece897bfbdd8152214">OpenMS::FileTypes::DTA</a></div><div class="ttdoc">DTA file (.dta) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:62</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a87b48e9729223183349bdfb171076285"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87b48e9729223183349bdfb171076285">OpenMS::FileTypes::XMASS</a></div><div class="ttdoc">XMass Analysis file (fid) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:86</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a55c4004ffd908d6e6ec96028e90916d0"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a55c4004ffd908d6e6ec96028e90916d0">OpenMS::FileTypes::KROENIK</a></div><div class="ttdoc">kroenik file (.kroenik) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:90</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a156eb0a4016596c802dd9c71fce11b8f"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a156eb0a4016596c802dd9c71fce11b8f">OpenMS::FileTypes::TRAML</a></div><div class="ttdoc">TraML (HUPO PSI format) for transitions (.traML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:81</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a21a09262032b7146a5b176a9bf8b7878"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a21a09262032b7146a5b176a9bf8b7878">OpenMS::FileTypes::QCML</a></div><div class="ttdoc">mzQualityML (will undergo standardisation maybe) (.qcml) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:79</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a523681f1477727482b38d5181ecb35d4"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a523681f1477727482b38d5181ecb35d4">OpenMS::FileTypes::TXT</a></div><div class="ttdoc">any text format, which has only loose definition of what it actually contains – thus it is usually ha...</div><div class="ttdef"><b>Definition:</b> FileTypes.h:94</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7acf2914f9bd6c3578d3de0b6b66c7d66b"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7acf2914f9bd6c3578d3de0b6b66c7d66b">OpenMS::FileTypes::HTML</a></div><div class="ttdoc">any HTML format </div><div class="ttdef"><b>Definition:</b> FileTypes.h:96</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a753b825a63c99787d10e05f7d65a87a6"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a753b825a63c99787d10e05f7d65a87a6">OpenMS::FileTypes::FEATUREXML</a></div><div class="ttdoc">OpenMS feature file (.featureXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:66</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7afa15b53779eca4b450b4cf7d704994dc"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7afa15b53779eca4b450b4cf7d704994dc">OpenMS::FileTypes::OBO</a></div><div class="ttdoc">Controlled Vocabulary format. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:95</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7aa330296e410966000e7c84c56b20d238"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7aa330296e410966000e7c84c56b20d238">OpenMS::FileTypes::TRANSFORMATIONXML</a></div><div class="ttdoc">Tranformation description file (.trafoXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:72</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a0bb9235aab9c4109f02500592f5b7d0d"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a0bb9235aab9c4109f02500592f5b7d0d">OpenMS::FileTypes::name_of_types_</a></div><div class="ttdeci">static const std::map&lt; Type, String &gt; name_of_types_</div><div class="ttdoc">Maps the FileType::Type to the preferred extension. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:115</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a60018cf01f907998778170cb8db31c99"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a60018cf01f907998778170cb8db31c99">OpenMS::FileTypes::XML</a></div><div class="ttdoc">any XML format </div><div class="ttdef"><b>Definition:</b> FileTypes.h:97</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a6fc6acb8fb3a8bc622473577782a882e"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a6fc6acb8fb3a8bc622473577782a882e">OpenMS::FileTypes::name_of_MZMLtypes_</a></div><div class="ttdeci">static const std::map&lt; Type, String &gt; name_of_MZMLtypes_</div><div class="ttdoc">Maps the FileType::Type to the preferred mzML CV name. </div><div class="ttdef"><b>Definition:</b> FileTypes.h:118</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a3b6e7ce6825dfd023976b1084ff7ae4f"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a3b6e7ce6825dfd023976b1084ff7ae4f">OpenMS::FileTypes::HARDKLOER</a></div><div class="ttdoc">hardkloer file (.hardkloer) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:89</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a3a0b6bd45a1e6680df29a84a1b9cacf3"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a3a0b6bd45a1e6680df29a84a1b9cacf3">OpenMS::FileTypes::GELML</a></div><div class="ttdoc">GelML (HUPO PSI format) (.gelML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:80</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a66c2f5cd90913752f565186657e85d84"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a66c2f5cd90913752f565186657e85d84">OpenMS::FileTypes::DTA2D</a></div><div class="ttdoc">DTA2D file (.dta2d) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:63</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a29bb13323f25136faf82e418da451b26"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a29bb13323f25136faf82e418da451b26">OpenMS::FileTypes::MGF</a></div><div class="ttdoc">Mascot Generic Format (.mgf) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:69</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7ab5518cc16bd1f60ebbb47e681a56b75f"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ab5518cc16bd1f60ebbb47e681a56b75f">OpenMS::FileTypes::MZML</a></div><div class="ttdoc">MzML file (.mzML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:73</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a388e8c4f1555e8502998bd7b2302f101"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a388e8c4f1555e8502998bd7b2302f101">OpenMS::FileTypes::INI</a></div><div class="ttdoc">OpenMS parameters file (.ini) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:70</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7af8a53519bd415aacd429c4239bbfd66e"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7af8a53519bd415aacd429c4239bbfd66e">OpenMS::FileTypes::MZXML</a></div><div class="ttdoc">MzXML file (.mzXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:65</div></div>
<div class="ttc" id="structOpenMS_1_1FileTypes_html_a1d1cfd8ffb84e947f82999c682b666a7a8afea1d83fb17a85640f67f9b35b64d2"><div class="ttname"><a href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a8afea1d83fb17a85640f67f9b35b64d2">OpenMS::FileTypes::PEPXML</a></div><div class="ttdoc">TPP pepXML file (.pepXML) </div><div class="ttdef"><b>Definition:</b> FileTypes.h:75</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:14 using doxygen 1.8.5</font></TD>
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