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<a href="FuzzyStringComparator_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Stephan Aiche $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Clemens Groepl, Stephan Aiche $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_CONCEPT_FUZZYSTRINGCOMPARATOR_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_CONCEPT_FUZZYSTRINGCOMPARATOR_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="Types_8h.html">OpenMS/CONCEPT/Types.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="StringList_8h.html">OpenMS/DATASTRUCTURES/StringList.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <cstdlib></span> <span class="comment">// for strtod()</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <fstream></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <cctype></span> <span class="comment">// for isspace()</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <limits></span> <span class="comment">// for NaN</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <sstream></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <map></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">namespace </span>Internal</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keyword">namespace </span>ClassTest</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  {</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keywordtype">void</span> OPENMS_DLLAPI</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <a class="code" href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#a18858190b9b8c0fbcb131df4707ca102">testStringSimilar</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> * file, <span class="keywordtype">int</span> line,</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="keyword">const</span> std::string & string_1,</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> * string_1_stringified,</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keyword">const</span> std::string & string_2,</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> * string_2_stringified);</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="keywordtype">bool</span> OPENMS_DLLAPI</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <a class="code" href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#abfb75eae735c15f17a95c69b9587bd98">isFileSimilar</a>(<span class="keyword">const</span> std::string &, <span class="keyword">const</span> std::string &);</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  }</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  }</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html"> 71</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  {</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">friend</span> <span class="keywordtype">void</span> OPENMS_DLLAPI</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <a class="code" href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#a18858190b9b8c0fbcb131df4707ca102">Internal::ClassTest::testStringSimilar</a>(</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> * file,</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keywordtype">int</span> line,</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">const</span> std::string & string_1,</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> * string_1_stringified,</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">const</span> std::string & string_2,</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> * string_2_stringified);</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="keyword">friend</span> <span class="keywordtype">bool</span> OPENMS_DLLAPI</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <a class="code" href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#abfb75eae735c15f17a95c69b9587bd98">Internal::ClassTest::isFileSimilar</a>(<span class="keyword">const</span> std::string &,</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">const</span> std::string &);</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> </div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1AbortComparison.html"> 87</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1AbortComparison.html">AbortComparison</a></div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  {</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  };</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a>();</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keyword">virtual</span></div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  ~<a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a>();</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a> & rhs);</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a> &</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a> & rhs);</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="keyword">const</span> <span class="keywordtype">double</span> &</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a7708615b17815d4b537141d848e9446d"> 114</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a7708615b17815d4b537141d848e9446d">getAcceptableRelative</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keywordflow">return</span> ratio_max_allowed_;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  }</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a2532d11030e847190d6d314d1093ffb3"> 121</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a2532d11030e847190d6d314d1093ffb3">setAcceptableRelative</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> rhs)</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  {</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  this->ratio_max_allowed_ = rhs;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordflow">if</span> (ratio_max_allowed_ < 1.0)</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  ratio_max_allowed_ = 1</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  / ratio_max_allowed_;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  }</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keyword">const</span> <span class="keywordtype">double</span> &</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a4a4bfb11a93570b878aa107eabb6d550"> 132</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a4a4bfb11a93570b878aa107eabb6d550">getAcceptableAbsolute</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keywordflow">return</span> absdiff_max_allowed_;</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  }</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00139"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#ac7d8d2708716ac76e5607027e15ca7c2"> 139</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#ac7d8d2708716ac76e5607027e15ca7c2">setAcceptableAbsolute</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> rhs)</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  {</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  this->absdiff_max_allowed_ = rhs;</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keywordflow">if</span> (absdiff_max_allowed_ < 0.0)</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  absdiff_max_allowed_</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  = -absdiff_max_allowed_;</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  }</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> &</div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a9b5c8d54e726c0c49817eb65abf9ee54"> 149</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a9b5c8d54e726c0c49817eb65abf9ee54">getWhitelist</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  <span class="keywordflow">return</span> whitelist_;</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  }</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> &</div>
<div class="line"><a name="l00156"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a86d7ffae9205e524d542506b1df59065"> 156</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a86d7ffae9205e524d542506b1df59065">getWhitelist</a>()</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  {</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keywordflow">return</span> whitelist_;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  }</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a20974f9ea1dfa9156fdde6968eccdc6b"> 163</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a20974f9ea1dfa9156fdde6968eccdc6b">setWhitelist</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> & rhs)</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  {</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  whitelist_ = rhs;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  }</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> &</div>
<div class="line"><a name="l00177"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#aa9b209c8bb838703a267d933da9bab8f"> 177</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#aa9b209c8bb838703a267d933da9bab8f">getVerboseLevel</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keywordflow">return</span> verbose_level_;</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  }</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00191"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a88a6e44ab5a2a7544036c831e8acebdf"> 191</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a88a6e44ab5a2a7544036c831e8acebdf">setVerboseLevel</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> rhs)</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  {</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  this->verbose_level_ = rhs;</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  }</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> </div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> &</div>
<div class="line"><a name="l00199"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a4a0d23c581fd03b8ce9d1a78428e030f"> 199</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a4a0d23c581fd03b8ce9d1a78428e030f">getTabWidth</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordflow">return</span> tab_width_;</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  }</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> </div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00207"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a3a87258e4788693cf5d71d5a486e1eca"> 207</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a3a87258e4788693cf5d71d5a486e1eca">setTabWidth</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> rhs)</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  {</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  this->tab_width_ = rhs;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  }</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> &</div>
<div class="line"><a name="l00215"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a531cf34d76fce9da021b8b0c7367e087"> 215</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a531cf34d76fce9da021b8b0c7367e087">getFirstColumn</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keywordflow">return</span> first_column_;</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  }</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span> </div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00223"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a1f9d97034d87ede3b921e88f5ebf674d"> 223</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a1f9d97034d87ede3b921e88f5ebf674d">setFirstColumn</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> rhs)</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  {</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  this->first_column_ = rhs;</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  }</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  std::ostream &</div>
<div class="line"><a name="l00234"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#afbbd1bc1ece27f2c5c9503d3905cc9eb"> 234</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#afbbd1bc1ece27f2c5c9503d3905cc9eb">getLogDestination</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordflow">return</span> *log_dest_;</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> </div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00249"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a76b7ba95e55066da94a25c66849e19df"> 249</a></span>  <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a76b7ba95e55066da94a25c66849e19df">setLogDestination</a>(std::ostream & rhs)</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  {</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  this->log_dest_ = &rhs;</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  }</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordtype">bool</span></div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  compareStrings(std::string <span class="keyword">const</span> & lhs, std::string <span class="keyword">const</span> & rhs);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordtype">bool</span></div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  compareStreams(std::istream & input_1, std::istream & input_2);</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordtype">bool</span></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  compareFiles(<span class="keyword">const</span> std::string & filename_1,</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="keyword">const</span> std::string & filename_2);</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span> </div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <span class="keywordtype">bool</span></div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  compareLines_(std::string <span class="keyword">const</span> & line_str_1,</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  std::string <span class="keyword">const</span> & line_str_2);</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  reportSuccess_() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> </div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  reportFailure_(<span class="keywordtype">char</span> <span class="keyword">const</span> * <span class="keyword">const</span> message) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span> </div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <span class="keywordtype">void</span> writeWhitelistCases_(<span class="keyword">const</span> std::string & prefix) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> </div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="keywordtype">void</span> readNextLine_(std::istream & input_stream, std::string & line_string, <span class="keywordtype">int</span> & line_number) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span> </div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="keywordtype">bool</span> openInputFileStream_(<span class="keyword">const</span> std::string & filename, std::ifstream & input_stream) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span> </div>
<div class="line"><a name="l00323"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#ac4fab0c8f3e9e9cbc76b9da2dd6c262a"> 323</a></span>  std::ostream * <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#ac4fab0c8f3e9e9cbc76b9da2dd6c262a">log_dest_</a>;</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span> </div>
<div class="line"><a name="l00326"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a27e0c01f4a3707d0e27c5d8761caf43c"> 326</a></span>  std::string <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a27e0c01f4a3707d0e27c5d8761caf43c">input_1_name_</a>;</div>
<div class="line"><a name="l00328"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#adb4db042ec094ff78153ba0a985d06e8"> 328</a></span>  std::string <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#adb4db042ec094ff78153ba0a985d06e8">input_2_name_</a>;</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span> </div>
<div class="line"><a name="l00331"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html"> 331</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">InputLine</a></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  {</div>
<div class="line"><a name="l00333"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1"> 333</a></span>  std::stringstream <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">line_</a>;</div>
<div class="line"><a name="l00334"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#abcf3f3c9e4203179d8c957105a940610"> 334</a></span>  std::ios::pos_type <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#abcf3f3c9e4203179d8c957105a940610">line_position_</a>;</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> </div>
<div class="line"><a name="l00336"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aff96ad9a3b2e3febb26a2da0c770d554"> 336</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aff96ad9a3b2e3febb26a2da0c770d554">InputLine</a>() :</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  line_()</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  {</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  }</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> </div>
<div class="line"><a name="l00342"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a9cae8753754d2caaffff63fe15e6762c"> 342</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a9cae8753754d2caaffff63fe15e6762c">setToString</a>(<span class="keyword">const</span> std::string & s)</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  {</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  line_.str(s);</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  line_.seekp(0);</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  line_.clear();</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  line_.unsetf(std::ios::skipws);</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  line_position_ = line_.tellg();</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  }</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span> </div>
<div class="line"><a name="l00353"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a37af0b3ac5daed8222a09ab966e57867"> 353</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a37af0b3ac5daed8222a09ab966e57867">updatePosition</a>()</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  {</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  line_position_ = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>(line_.tellg()) != -1 ? line_.tellg() : std::ios::pos_type(line_.str().length())); <span class="comment">// save current reading position</span></div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  }</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span> </div>
<div class="line"><a name="l00359"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e"> 359</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e">seekGToSavedPosition</a>()</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  {</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  line_.clear(); <span class="comment">// reset status</span></div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  line_.seekg(line_position_); <span class="comment">// rewind to saved position</span></div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span> </div>
<div class="line"><a name="l00372"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aab5dae3a821c07840093b86003f76be1"> 372</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aab5dae3a821c07840093b86003f76be1">ok</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="keywordflow">return</span> !line_.fail(); <span class="comment">// failbit AND badbit are both NOT set; using fail() seems the only portable solution for both C++98 and C++11</span></div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="comment">// operator bool() (C++11 only) and operator void*() (C++98 only) are both not very sexy since they are not "safe bool idiomic" and would require</span></div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <span class="comment">// a macro here... So we use a real function name (both internally and externally)</span></div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  }</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  };</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> </div>
<div class="line"><a name="l00380"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#ae2c24d52107914a3d320e2488b8697af"> 380</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">InputLine</a> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#ae2c24d52107914a3d320e2488b8697af">input_line_1_</a>;</div>
<div class="line"><a name="l00381"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a09acbbbd6052355cb67700a49b40af69"> 381</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">InputLine</a> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a09acbbbd6052355cb67700a49b40af69">input_line_2_</a>;</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> </div>
<div class="line"><a name="l00383"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#aaea1b72ff02abe88dcfef6974013db39"> 383</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#aaea1b72ff02abe88dcfef6974013db39">line_num_1_</a>;</div>
<div class="line"><a name="l00384"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a606560b6000fdc8d62a3755bc581f4d1"> 384</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a606560b6000fdc8d62a3755bc581f4d1">line_num_2_</a>;</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> </div>
<div class="line"><a name="l00386"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a12936b7f12b7ee8c23e29406d00c8650"> 386</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a12936b7f12b7ee8c23e29406d00c8650">line_num_1_max_</a>;</div>
<div class="line"><a name="l00387"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#af1fba8bf9df2fe9748fc4e326bc2f3e6"> 387</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#af1fba8bf9df2fe9748fc4e326bc2f3e6">line_num_2_max_</a>;</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a514f09de593c2216dd2c44f7896a2b40"> 389</a></span>  std::string <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a514f09de593c2216dd2c44f7896a2b40">line_str_1_max_</a>;</div>
<div class="line"><a name="l00390"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a972ba27f5288c15d2366e95f1cb6e552"> 390</a></span>  std::string <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a972ba27f5288c15d2366e95f1cb6e552">line_str_2_max_</a>;</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span> </div>
<div class="line"><a name="l00393"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a02dd1af598a1b912b0bad7dd92d8c5ae"> 393</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a02dd1af598a1b912b0bad7dd92d8c5ae">ratio_max_allowed_</a>;</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span> </div>
<div class="line"><a name="l00396"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a93d483a2d451e7382aab6a885011225e"> 396</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a93d483a2d451e7382aab6a885011225e">ratio_max_</a>;</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span> </div>
<div class="line"><a name="l00399"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a8ebe646551b020194cb0ecf657e3ff79"> 399</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a8ebe646551b020194cb0ecf657e3ff79">absdiff_max_allowed_</a>;</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span> </div>
<div class="line"><a name="l00402"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a99a051e1bb48ce428c66376fa6b911fe"> 402</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a99a051e1bb48ce428c66376fa6b911fe">absdiff_max_</a>;</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00405"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html"> 405</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html">StreamElement_</a></div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  {</div>
<div class="line"><a name="l00407"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a01b4671c6b7cc8f831c951c000a37735"> 407</a></span>  <span class="keywordtype">double</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a01b4671c6b7cc8f831c951c000a37735">number</a>;</div>
<div class="line"><a name="l00408"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#aeea81bea8866fd44880f53ed5b59c6f0"> 408</a></span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#aeea81bea8866fd44880f53ed5b59c6f0">letter</a>;</div>
<div class="line"><a name="l00409"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a0c5e9f68b74074d7b94f03608be47e0c"> 409</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a0c5e9f68b74074d7b94f03608be47e0c">is_number</a>;</div>
<div class="line"><a name="l00410"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a646b6486eb94b5b7b3aac8a197fa69ed"> 410</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a646b6486eb94b5b7b3aac8a197fa69ed">is_space</a>;</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> </div>
<div class="line"><a name="l00412"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a9064e0738a5b31e4056afff4d63834f1"> 412</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a9064e0738a5b31e4056afff4d63834f1">StreamElement_</a>() :</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  number(0),</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  letter(0),</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  is_number(false),</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  is_space(false)</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  {}</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span> </div>
<div class="line"><a name="l00420"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad20897c5c8bd47f5d4005989bead0e55"> 420</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad20897c5c8bd47f5d4005989bead0e55">reset</a>()</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  {</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  is_number = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  is_space = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  letter = <span class="charliteral">'\0'</span>;</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  number = std::numeric_limits<double>::quiet_NaN();</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  }</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> </div>
<div class="line"><a name="l00429"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad9013184228cbd6f990b4db703b57f9d"> 429</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad9013184228cbd6f990b4db703b57f9d">fillFromInputLine</a>(<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">InputLine</a> & input_line)</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  {</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="comment">// first reset all internal variables so we do not mess with</span></div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="comment">// old values</span></div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  reset();</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span> </div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a37af0b3ac5daed8222a09ab966e57867">updatePosition</a>();</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">line_</a> >> letter; <span class="comment">// read letter</span></div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="keywordflow">if</span> ((is_space = (isspace(letter) != 0))) <span class="comment">// is whitespace?</span></div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  {</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">line_</a> >> std::ws; <span class="comment">// skip over further whitespace</span></div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  }</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  {</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e">seekGToSavedPosition</a>();</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  <span class="keywordflow">if</span> ((is_number = (<span class="keywordtype">bool</span>(input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">line_</a> >> number)))) <span class="comment">// is a number? (explicit bool op for C11)</span></div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  {</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  }</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  {</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e">seekGToSavedPosition</a>();</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">line_</a> >> letter; <span class="comment">// read letter</span></div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  }</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  }</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  }</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> </div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  };</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span> </div>
<div class="line"><a name="l00458"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a5704740a5f261f9c2f4bd5d728554262"> 458</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html">StreamElement_</a> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a5704740a5f261f9c2f4bd5d728554262">element_1_</a>;</div>
<div class="line"><a name="l00460"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a90c47fa2e124e502c4a0c2a16273e30d"> 460</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html">StreamElement_</a> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a90c47fa2e124e502c4a0c2a16273e30d">element_2_</a>;</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span> </div>
<div class="line"><a name="l00463"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html"> 463</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html">PrefixInfo_</a></div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  {</div>
<div class="line"><a name="l00465"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac0f397b7c10467ea4ec9c3c5a6e9f53f"> 465</a></span>  <a class="code" href="classOpenMS_1_1String.html">OpenMS::String</a> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac0f397b7c10467ea4ec9c3c5a6e9f53f">prefix</a>;</div>
<div class="line"><a name="l00466"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a788c8c669525beabf185bddad1e90227"> 466</a></span>  <a class="code" href="classOpenMS_1_1String.html">OpenMS::String</a> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a788c8c669525beabf185bddad1e90227">prefix_whitespaces</a>;</div>
<div class="line"><a name="l00467"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a9f7168ef34e5927667ef433e36945a08"> 467</a></span>  <span class="keywordtype">int</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a9f7168ef34e5927667ef433e36945a08">line_column</a>;</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span> </div>
<div class="line"><a name="l00469"></a><span class="lineno"><a class="line" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac9c39175fc0182f7df9c20c9553ff342"> 469</a></span>  <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac9c39175fc0182f7df9c20c9553ff342">PrefixInfo_</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">InputLine</a> & input_line, <span class="keyword">const</span> <span class="keywordtype">int</span> tab_width_, <span class="keyword">const</span> <span class="keywordtype">int</span> first_column_) :</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  prefix(input_line.line_.str()), line_column(0)</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  {</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  prefix = prefix.prefix(<span class="keywordtype">size_t</span>(input_line.<a class="code" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#abcf3f3c9e4203179d8c957105a940610">line_position_</a>));</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  prefix_whitespaces = prefix;</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="keywordflow">for</span> (String::iterator iter = prefix_whitespaces.begin(); iter != prefix_whitespaces.end(); ++iter)</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  {</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  <span class="keywordflow">if</span> (*iter != <span class="charliteral">'\t'</span>)</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  {</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  * iter = <span class="charliteral">' '</span>;</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  ++line_column;</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  }</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  {</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  line_column = (line_column / tab_width_ + 1) * tab_width_;</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  }</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  }</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  line_column += first_column_;</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  }</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span> </div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  };</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span> </div>
<div class="line"><a name="l00491"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#ad6cfb8c3a8bb3bc809a56dfc8c6d3b21"> 491</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#ad6cfb8c3a8bb3bc809a56dfc8c6d3b21">is_absdiff_small_</a>;</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span> </div>
<div class="line"><a name="l00493"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a52cb2dd29055bdabf9ad37fc8b100ca0"> 493</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a52cb2dd29055bdabf9ad37fc8b100ca0">verbose_level_</a>;</div>
<div class="line"><a name="l00494"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a27e5961d48a3539c63be1551c7f13c9a"> 494</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a27e5961d48a3539c63be1551c7f13c9a">tab_width_</a>;</div>
<div class="line"><a name="l00495"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#aac619435448df2fdc3ffab99b3d320c5"> 495</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#aac619435448df2fdc3ffab99b3d320c5">first_column_</a>;</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span> </div>
<div class="line"><a name="l00500"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#a8e200b42827574832f5cadc7351ec31a"> 500</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#a8e200b42827574832f5cadc7351ec31a">is_status_success_</a>;</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span> </div>
<div class="line"><a name="l00503"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#aef44662bc058111fd6bd42aaefc4f853"> 503</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#aef44662bc058111fd6bd42aaefc4f853">use_prefix_</a>;</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span> </div>
<div class="line"><a name="l00505"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#aa43c9c6f47184a7ea849428d34529dff"> 505</a></span>  <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#aa43c9c6f47184a7ea849428d34529dff">whitelist_</a>;</div>
<div class="line"><a name="l00506"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FuzzyStringComparator.html#ac5a2c65fe5faee83db42f7b67c6969c6"> 506</a></span>  std::map<String, UInt> <a class="code" href="classOpenMS_1_1FuzzyStringComparator.html#ac5a2c65fe5faee83db42f7b67c6969c6">whitelist_cases_</a>;</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span> </div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  }; <span class="comment">// class FuzzyStringComparator</span></div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span> </div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> } <span class="comment">//namespace OpenMS</span></div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span> </div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span> <span class="preprocessor">#endif //OPENMS_CONCEPT_FUZZYSTRINGCOMPARATOR_H</span></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a90c47fa2e124e502c4a0c2a16273e30d"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a90c47fa2e124e502c4a0c2a16273e30d">OpenMS::FuzzyStringComparator::element_2_</a></div><div class="ttdeci">StreamElement_ element_2_</div><div class="ttdoc">Stores information about characters, numbers, and whitesspaces loaded from the second input stream...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:460</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a52cb2dd29055bdabf9ad37fc8b100ca0"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a52cb2dd29055bdabf9ad37fc8b100ca0">OpenMS::FuzzyStringComparator::verbose_level_</a></div><div class="ttdeci">int verbose_level_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:493</div></div>
<div class="ttc" id="namespaceOpenMS_1_1Internal_1_1ClassTest_html_a18858190b9b8c0fbcb131df4707ca102"><div class="ttname"><a href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#a18858190b9b8c0fbcb131df4707ca102">OpenMS::Internal::ClassTest::testStringSimilar</a></div><div class="ttdeci">void testStringSimilar(const char *file, int line, const std::string &string_1, const char *string_1_stringified, const std::string &string_2, const char *string_2_stringified)</div><div class="ttdoc">Compare strings using absdiff_max_allowed and ratio_max_allowed. </div></div>
<div class="ttc" id="Types_8h_html"><div class="ttname"><a href="Types_8h.html">Types.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1AbortComparison_html"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1AbortComparison.html">OpenMS::FuzzyStringComparator::AbortComparison</a></div><div class="ttdoc">Internal exception class. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:87</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html">OpenMS::FuzzyStringComparator::InputLine</a></div><div class="ttdoc">Stores information about the current input line (i.e., stream for the line and the current position i...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:331</div></div>
<div class="ttc" id="StringList_8h_html"><div class="ttname"><a href="StringList_8h.html">StringList.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a02dd1af598a1b912b0bad7dd92d8c5ae"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a02dd1af598a1b912b0bad7dd92d8c5ae">OpenMS::FuzzyStringComparator::ratio_max_allowed_</a></div><div class="ttdeci">double ratio_max_allowed_</div><div class="ttdoc">Maximum ratio of numbers allowed, see ratio_max_. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:393</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html">OpenMS::FuzzyStringComparator::StreamElement_</a></div><div class="ttdoc">Stores information about characters, numbers, and whitesspaces loaded from the InputStream. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:405</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_a88ba980faed2c5dc743ce1ca2a2bb86e"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e">OpenMS::FuzzyStringComparator::InputLine::seekGToSavedPosition</a></div><div class="ttdeci">void seekGToSavedPosition()</div><div class="ttdoc">Resets the stream to the last saved position. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:359</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a99a051e1bb48ce428c66376fa6b911fe"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a99a051e1bb48ce428c66376fa6b911fe">OpenMS::FuzzyStringComparator::absdiff_max_</a></div><div class="ttdeci">double absdiff_max_</div><div class="ttdoc">Maximum difference of numbers observed so far, see absdiff_max_allowed_. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:402</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo___html_a9f7168ef34e5927667ef433e36945a08"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a9f7168ef34e5927667ef433e36945a08">OpenMS::FuzzyStringComparator::PrefixInfo_::line_column</a></div><div class="ttdeci">int line_column</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:467</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a8ebe646551b020194cb0ecf657e3ff79"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a8ebe646551b020194cb0ecf657e3ff79">OpenMS::FuzzyStringComparator::absdiff_max_allowed_</a></div><div class="ttdeci">double absdiff_max_allowed_</div><div class="ttdoc">Maximum absolute difference of numbers allowed, see absdiff_max_. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:399</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo___html_ac0f397b7c10467ea4ec9c3c5a6e9f53f"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac0f397b7c10467ea4ec9c3c5a6e9f53f">OpenMS::FuzzyStringComparator::PrefixInfo_::prefix</a></div><div class="ttdeci">OpenMS::String prefix</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:465</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_aef44662bc058111fd6bd42aaefc4f853"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#aef44662bc058111fd6bd42aaefc4f853">OpenMS::FuzzyStringComparator::use_prefix_</a></div><div class="ttdeci">bool use_prefix_</div><div class="ttdoc">use a prefix when reporting </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:503</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_aa9b209c8bb838703a267d933da9bab8f"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#aa9b209c8bb838703a267d933da9bab8f">OpenMS::FuzzyStringComparator::getVerboseLevel</a></div><div class="ttdeci">const int & getVerboseLevel() const </div><div class="ttdoc">verbose level </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:177</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_ac4fab0c8f3e9e9cbc76b9da2dd6c262a"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#ac4fab0c8f3e9e9cbc76b9da2dd6c262a">OpenMS::FuzzyStringComparator::log_dest_</a></div><div class="ttdeci">std::ostream * log_dest_</div><div class="ttdoc">Log and results output goes here. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:323</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_ad9013184228cbd6f990b4db703b57f9d"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad9013184228cbd6f990b4db703b57f9d">OpenMS::FuzzyStringComparator::StreamElement_::fillFromInputLine</a></div><div class="ttdeci">void fillFromInputLine(InputLine &input_line)</div><div class="ttdoc">Read the next element from an InputLine and update the InputLine accordingly. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:429</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_aeea81bea8866fd44880f53ed5b59c6f0"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#aeea81bea8866fd44880f53ed5b59c6f0">OpenMS::FuzzyStringComparator::StreamElement_::letter</a></div><div class="ttdeci">unsigned char letter</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:408</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a3a87258e4788693cf5d71d5a486e1eca"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a3a87258e4788693cf5d71d5a486e1eca">OpenMS::FuzzyStringComparator::setTabWidth</a></div><div class="ttdeci">void setTabWidth(const int rhs)</div><div class="ttdoc">set tab width (for column numbers) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:207</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a76b7ba95e55066da94a25c66849e19df"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a76b7ba95e55066da94a25c66849e19df">OpenMS::FuzzyStringComparator::setLogDestination</a></div><div class="ttdeci">void setLogDestination(std::ostream &rhs)</div><div class="ttdoc">Log output is written to this destination. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:249</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_abcf3f3c9e4203179d8c957105a940610"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#abcf3f3c9e4203179d8c957105a940610">OpenMS::FuzzyStringComparator::InputLine::line_position_</a></div><div class="ttdeci">std::ios::pos_type line_position_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:334</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_a646b6486eb94b5b7b3aac8a197fa69ed"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a646b6486eb94b5b7b3aac8a197fa69ed">OpenMS::FuzzyStringComparator::StreamElement_::is_space</a></div><div class="ttdeci">bool is_space</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:410</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html">OpenMS::FuzzyStringComparator</a></div><div class="ttdoc">Fuzzy comparison of strings, tolerates numeric differences. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a972ba27f5288c15d2366e95f1cb6e552"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a972ba27f5288c15d2366e95f1cb6e552">OpenMS::FuzzyStringComparator::line_str_2_max_</a></div><div class="ttdeci">std::string line_str_2_max_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:390</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_afbbd1bc1ece27f2c5c9503d3905cc9eb"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#afbbd1bc1ece27f2c5c9503d3905cc9eb">OpenMS::FuzzyStringComparator::getLogDestination</a></div><div class="ttdeci">std::ostream & getLogDestination() const </div><div class="ttdoc">Log output is written to this destination. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:234</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a606560b6000fdc8d62a3755bc581f4d1"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a606560b6000fdc8d62a3755bc581f4d1">OpenMS::FuzzyStringComparator::line_num_2_</a></div><div class="ttdeci">int line_num_2_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:384</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo___html_ac9c39175fc0182f7df9c20c9553ff342"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac9c39175fc0182f7df9c20c9553ff342">OpenMS::FuzzyStringComparator::PrefixInfo_::PrefixInfo_</a></div><div class="ttdeci">PrefixInfo_(const InputLine &input_line, const int tab_width_, const int first_column_)</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:469</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a86d7ffae9205e524d542506b1df59065"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a86d7ffae9205e524d542506b1df59065">OpenMS::FuzzyStringComparator::getWhitelist</a></div><div class="ttdeci">StringList & getWhitelist()</div><div class="ttdoc">White list. If both lines contain the same element from this list, they are skipped over...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:156</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_ac5a2c65fe5faee83db42f7b67c6969c6"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#ac5a2c65fe5faee83db42f7b67c6969c6">OpenMS::FuzzyStringComparator::whitelist_cases_</a></div><div class="ttdeci">std::map< String, UInt > whitelist_cases_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:506</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a7708615b17815d4b537141d848e9446d"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a7708615b17815d4b537141d848e9446d">OpenMS::FuzzyStringComparator::getAcceptableRelative</a></div><div class="ttdeci">const double & getAcceptableRelative() const </div><div class="ttdoc">Acceptable relative error (a number &gt;= 1.0) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_ac7d8d2708716ac76e5607027e15ca7c2"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#ac7d8d2708716ac76e5607027e15ca7c2">OpenMS::FuzzyStringComparator::setAcceptableAbsolute</a></div><div class="ttdeci">void setAcceptableAbsolute(const double rhs)</div><div class="ttdoc">Acceptable absolute difference (a number &gt;= 0.0) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:139</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a88a6e44ab5a2a7544036c831e8acebdf"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a88a6e44ab5a2a7544036c831e8acebdf">OpenMS::FuzzyStringComparator::setVerboseLevel</a></div><div class="ttdeci">void setVerboseLevel(const int rhs)</div><div class="ttdoc">verbose level </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:191</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_a0c5e9f68b74074d7b94f03608be47e0c"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a0c5e9f68b74074d7b94f03608be47e0c">OpenMS::FuzzyStringComparator::StreamElement_::is_number</a></div><div class="ttdeci">bool is_number</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:409</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_a9cae8753754d2caaffff63fe15e6762c"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a9cae8753754d2caaffff63fe15e6762c">OpenMS::FuzzyStringComparator::InputLine::setToString</a></div><div class="ttdeci">void setToString(const std::string &s)</div><div class="ttdoc">Initialize the input line to the passed string. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:342</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo___html_a788c8c669525beabf185bddad1e90227"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a788c8c669525beabf185bddad1e90227">OpenMS::FuzzyStringComparator::PrefixInfo_::prefix_whitespaces</a></div><div class="ttdeci">OpenMS::String prefix_whitespaces</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:466</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_a01b4671c6b7cc8f831c951c000a37735"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a01b4671c6b7cc8f831c951c000a37735">OpenMS::FuzzyStringComparator::StreamElement_::number</a></div><div class="ttdeci">double number</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:407</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_aac619435448df2fdc3ffab99b3d320c5"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#aac619435448df2fdc3ffab99b3d320c5">OpenMS::FuzzyStringComparator::first_column_</a></div><div class="ttdeci">int first_column_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:495</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a27e5961d48a3539c63be1551c7f13c9a"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a27e5961d48a3539c63be1551c7f13c9a">OpenMS::FuzzyStringComparator::tab_width_</a></div><div class="ttdeci">int tab_width_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:494</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a93d483a2d451e7382aab6a885011225e"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a93d483a2d451e7382aab6a885011225e">OpenMS::FuzzyStringComparator::ratio_max_</a></div><div class="ttdeci">double ratio_max_</div><div class="ttdoc">Maximum ratio of numbers observed so far, see ratio_max_allowed_. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:396</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_aaea1b72ff02abe88dcfef6974013db39"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#aaea1b72ff02abe88dcfef6974013db39">OpenMS::FuzzyStringComparator::line_num_1_</a></div><div class="ttdeci">int line_num_1_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:383</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_a9064e0738a5b31e4056afff4d63834f1"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a9064e0738a5b31e4056afff4d63834f1">OpenMS::FuzzyStringComparator::StreamElement_::StreamElement_</a></div><div class="ttdeci">StreamElement_()</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:412</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a5704740a5f261f9c2f4bd5d728554262"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a5704740a5f261f9c2f4bd5d728554262">OpenMS::FuzzyStringComparator::element_1_</a></div><div class="ttdeci">StreamElement_ element_1_</div><div class="ttdoc">Stores information about characters, numbers, and whitesspaces loaded from the first input stream...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:458</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement___html_ad20897c5c8bd47f5d4005989bead0e55"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#ad20897c5c8bd47f5d4005989bead0e55">OpenMS::FuzzyStringComparator::StreamElement_::reset</a></div><div class="ttdeci">void reset()</div><div class="ttdoc">reset all elements of the element to default value </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:420</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a531cf34d76fce9da021b8b0c7367e087"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a531cf34d76fce9da021b8b0c7367e087">OpenMS::FuzzyStringComparator::getFirstColumn</a></div><div class="ttdeci">const int & getFirstColumn() const </div><div class="ttdoc">get first column (for column numbers) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:215</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_aa43c9c6f47184a7ea849428d34529dff"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#aa43c9c6f47184a7ea849428d34529dff">OpenMS::FuzzyStringComparator::whitelist_</a></div><div class="ttdeci">StringList whitelist_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:505</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a09acbbbd6052355cb67700a49b40af69"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a09acbbbd6052355cb67700a49b40af69">OpenMS::FuzzyStringComparator::input_line_2_</a></div><div class="ttdeci">InputLine input_line_2_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:381</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a8e200b42827574832f5cadc7351ec31a"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a8e200b42827574832f5cadc7351ec31a">OpenMS::FuzzyStringComparator::is_status_success_</a></div><div class="ttdeci">bool is_status_success_</div><div class="ttdoc">Has comparison been sucessful so far? Note: this flag is changed in reportFailure_();. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:500</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_a37af0b3ac5daed8222a09ab966e57867"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a37af0b3ac5daed8222a09ab966e57867">OpenMS::FuzzyStringComparator::InputLine::updatePosition</a></div><div class="ttdeci">void updatePosition()</div><div class="ttdoc">Save current position of the stream. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:353</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a2532d11030e847190d6d314d1093ffb3"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a2532d11030e847190d6d314d1093ffb3">OpenMS::FuzzyStringComparator::setAcceptableRelative</a></div><div class="ttdeci">void setAcceptableRelative(const double rhs)</div><div class="ttdoc">Acceptable relative error (a number &gt;= 1.0) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_adb4db042ec094ff78153ba0a985d06e8"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#adb4db042ec094ff78153ba0a985d06e8">OpenMS::FuzzyStringComparator::input_2_name_</a></div><div class="ttdeci">std::string input_2_name_</div><div class="ttdoc">Name of second input e.g., filename. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:328</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a1f9d97034d87ede3b921e88f5ebf674d"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a1f9d97034d87ede3b921e88f5ebf674d">OpenMS::FuzzyStringComparator::setFirstColumn</a></div><div class="ttdeci">void setFirstColumn(const int rhs)</div><div class="ttdoc">set first column (for column numbers) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:223</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_aff96ad9a3b2e3febb26a2da0c770d554"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aff96ad9a3b2e3febb26a2da0c770d554">OpenMS::FuzzyStringComparator::InputLine::InputLine</a></div><div class="ttdeci">InputLine()</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:336</div></div>
<div class="ttc" id="classOpenMS_1_1StringList_html"><div class="ttname"><a href="classOpenMS_1_1StringList.html">OpenMS::StringList</a></div><div class="ttdoc">String list. </div><div class="ttdef"><b>Definition:</b> StringList.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a12936b7f12b7ee8c23e29406d00c8650"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a12936b7f12b7ee8c23e29406d00c8650">OpenMS::FuzzyStringComparator::line_num_1_max_</a></div><div class="ttdeci">int line_num_1_max_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:386</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a514f09de593c2216dd2c44f7896a2b40"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a514f09de593c2216dd2c44f7896a2b40">OpenMS::FuzzyStringComparator::line_str_1_max_</a></div><div class="ttdeci">std::string line_str_1_max_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:389</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a20974f9ea1dfa9156fdde6968eccdc6b"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a20974f9ea1dfa9156fdde6968eccdc6b">OpenMS::FuzzyStringComparator::setWhitelist</a></div><div class="ttdeci">void setWhitelist(const StringList &rhs)</div><div class="ttdoc">White list. If both lines contain the same element from this list, they are skipped over...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:163</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_aa3a423655f3e6f7a31762cdfbde87ec1"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aa3a423655f3e6f7a31762cdfbde87ec1">OpenMS::FuzzyStringComparator::InputLine::line_</a></div><div class="ttdeci">std::stringstream line_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:333</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a9b5c8d54e726c0c49817eb65abf9ee54"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a9b5c8d54e726c0c49817eb65abf9ee54">OpenMS::FuzzyStringComparator::getWhitelist</a></div><div class="ttdeci">const StringList & getWhitelist() const </div><div class="ttdoc">White list. If both lines contain the same element from this list, they are skipped over...</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:149</div></div>
<div class="ttc" id="namespaceOpenMS_1_1Internal_1_1ClassTest_html_abfb75eae735c15f17a95c69b9587bd98"><div class="ttname"><a href="namespaceOpenMS_1_1Internal_1_1ClassTest.html#abfb75eae735c15f17a95c69b9587bd98">OpenMS::Internal::ClassTest::isFileSimilar</a></div><div class="ttdeci">bool isFileSimilar(const std::string &filename_1, const std::string &filename_2)</div><div class="ttdoc">Compare files using absdiff_max_allowed and ratio_max_allowed. </div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_ad6cfb8c3a8bb3bc809a56dfc8c6d3b21"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#ad6cfb8c3a8bb3bc809a56dfc8c6d3b21">OpenMS::FuzzyStringComparator::is_absdiff_small_</a></div><div class="ttdeci">bool is_absdiff_small_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:491</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a4a4bfb11a93570b878aa107eabb6d550"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a4a4bfb11a93570b878aa107eabb6d550">OpenMS::FuzzyStringComparator::getAcceptableAbsolute</a></div><div class="ttdeci">const double & getAcceptableAbsolute() const </div><div class="ttdoc">Acceptable absolute difference (a number &gt;= 0.0) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:132</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo___html"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html">OpenMS::FuzzyStringComparator::PrefixInfo_</a></div><div class="ttdoc">Wrapper for the prefix information computed for the failure report. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:463</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_af1fba8bf9df2fe9748fc4e326bc2f3e6"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#af1fba8bf9df2fe9748fc4e326bc2f3e6">OpenMS::FuzzyStringComparator::line_num_2_max_</a></div><div class="ttdeci">int line_num_2_max_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:387</div></div>
<div class="ttc" id="structOpenMS_1_1FuzzyStringComparator_1_1InputLine_html_aab5dae3a821c07840093b86003f76be1"><div class="ttname"><a href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#aab5dae3a821c07840093b86003f76be1">OpenMS::FuzzyStringComparator::InputLine::ok</a></div><div class="ttdeci">bool ok() const </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:372</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_ae2c24d52107914a3d320e2488b8697af"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#ae2c24d52107914a3d320e2488b8697af">OpenMS::FuzzyStringComparator::input_line_1_</a></div><div class="ttdeci">InputLine input_line_1_</div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:380</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a4a0d23c581fd03b8ce9d1a78428e030f"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a4a0d23c581fd03b8ce9d1a78428e030f">OpenMS::FuzzyStringComparator::getTabWidth</a></div><div class="ttdeci">const int & getTabWidth() const </div><div class="ttdoc">get tab width (for column numbers) </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:199</div></div>
<div class="ttc" id="classOpenMS_1_1FuzzyStringComparator_html_a27e0c01f4a3707d0e27c5d8761caf43c"><div class="ttname"><a href="classOpenMS_1_1FuzzyStringComparator.html#a27e0c01f4a3707d0e27c5d8761caf43c">OpenMS::FuzzyStringComparator::input_1_name_</a></div><div class="ttdeci">std::string input_1_name_</div><div class="ttdoc">Name of first input e.g., filename. </div><div class="ttdef"><b>Definition:</b> FuzzyStringComparator.h:326</div></div>
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