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<a href="IntegerMassDecomposer_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Stephan Aiche $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor">#ifndef OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_INTEGERMASSDECOMPOSER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_INTEGERMASSDECOMPOSER_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <utility></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="Weights_8h.html">OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="MassDecomposer_8h.html">OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/MassDecomposer.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <<a class="code" href="MathFunctions_8h.html">OpenMS/MATH/MISC/MathFunctions.h</a>></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> {</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="keyword">namespace </span>ims</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType = <span class="keywordtype">long</span> <span class="keywordtype">unsigned</span> int,</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">typename</span> DecompositionValueType = <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>></div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html"> 71</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html">IntegerMassDecomposer</a> :</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ims_1_1MassDecomposer.html">MassDecomposer</a><ValueType, DecompositionValueType></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  {</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8"> 76</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1MassDecomposer.html#a7e925095614a18db84f21a0de507edb5">MassDecomposer<ValueType, DecompositionValueType>::value_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a>;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e"> 79</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1MassDecomposer.html#a7346a87f8ad822456061ff74cbaffa3b">MassDecomposer<ValueType, DecompositionValueType>::decomposition_value_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a>;</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
<div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984"> 82</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1MassDecomposer.html#ad16c2b9e2e514b3fa56f73f3fb95b2b5">MassDecomposer<ValueType, DecompositionValueType>::decomposition_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a>;</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48"> 85</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1MassDecomposer.html#aa2fe611aa3c8baa38be4ee3ddfa2d524">MassDecomposer<ValueType, DecompositionValueType>::decompositions_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">decompositions_type</a>;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee"> 88</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> decomposition_type::size_type <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a>;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="keyword">explicit</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1d9e5a439d77c54cd45e38e8200de7b3">IntegerMassDecomposer</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> & alphabet);</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac3e4c66ba43e52eff0a75edeca5a54fd">exist</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass);</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a156de4a736fd7cde318ab9da993a0d25">getDecomposition</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass);</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">decompositions_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#addaeefa17c7915094e26b3a2f564643a">getAllDecompositions</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass);</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> </div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a77703beb2bdc9ac53738efe778f4f9de">getNumberOfDecompositions</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass);</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> </div>
<div class="line"><a name="l00136"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510"> 136</a></span>  <span class="keyword">typedef</span> std::vector<std::pair<size_type, decomposition_value_type> > <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510">witness_vector_type</a>;</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00141"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0"> 141</a></span>  <span class="keyword">typedef</span> std::vector<value_type> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a>;</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c"> 146</a></span>  <span class="keyword">typedef</span> std::vector<residues_table_row_type> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c">residues_table_type</a>;</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a name="l00151"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a154503c35e5f3d8aab8ea82d4671fa39"> 151</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a154503c35e5f3d8aab8ea82d4671fa39">alphabet_</a>;</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac71d129ec141185224a1afa14afcd79b"> 158</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c">residues_table_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac71d129ec141185224a1afa14afcd79b">ertable_</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a125032f89f061df641204527fff3616d"> 164</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a125032f89f061df641204527fff3616d">lcms_</a>;</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> </div>
<div class="line"><a name="l00171"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a89b1d9bfa3bed832f538e7f136d565b3"> 171</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a89b1d9bfa3bed832f538e7f136d565b3">mass_in_lcms_</a>;</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1bfed7da2c2658de7160d1e3d9f26641"> 176</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1bfed7da2c2658de7160d1e3d9f26641">infty_</a>;</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#aa9d4c7783d20be3e473d0031c372d8f2"> 182</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510">witness_vector_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#aa9d4c7783d20be3e473d0031c372d8f2">witness_vector_</a>;</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> </div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#af76088c84d7e9b64dcc365c545b5811f">fillExtendedResidueTable_</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> & _alphabet, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & _lcms,</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & _mass_in_lcms, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> _infty,</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510">witness_vector_type</a> & _witness_vector, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c">residues_table_type</a> & _ertable);</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0">collectDecompositionsRecursively_</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> alphabetMassIndex,</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a> decomposition, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">decompositions_type</a> & decompositionsStore);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  };</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> </div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00205"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1d9e5a439d77c54cd45e38e8200de7b3"> 205</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1d9e5a439d77c54cd45e38e8200de7b3">IntegerMassDecomposer<ValueType, DecompositionValueType>::IntegerMassDecomposer</a>(</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> & alphabet) :</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  alphabet_(alphabet)</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  {</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a125032f89f061df641204527fff3616d">lcms_</a>.resize(alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>());</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a89b1d9bfa3bed832f538e7f136d565b3">mass_in_lcms_</a>.resize(alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>());</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1bfed7da2c2658de7160d1e3d9f26641">infty_</a> = alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">getWeight</a>(0) * alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">getWeight</a>(alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>() - 1);</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> </div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#af76088c84d7e9b64dcc365c545b5811f">fillExtendedResidueTable_</a>(alphabet, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a125032f89f061df641204527fff3616d">lcms_</a>, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a89b1d9bfa3bed832f538e7f136d565b3">mass_in_lcms_</a>, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1bfed7da2c2658de7160d1e3d9f26641">infty_</a>, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#aa9d4c7783d20be3e473d0031c372d8f2">witness_vector_</a>, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac71d129ec141185224a1afa14afcd79b">ertable_</a>);</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span> </div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  }</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span> </div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00220"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#af76088c84d7e9b64dcc365c545b5811f"> 220</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#af76088c84d7e9b64dcc365c545b5811f">IntegerMassDecomposer<ValueType, DecompositionValueType>::fillExtendedResidueTable_</a>(</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> & _alphabet, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & _lcms, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & _mass_in_lcms,</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> _infty, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510">witness_vector_type</a> & _witnessVector, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c">residues_table_type</a> & _ertable)</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  {</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keywordflow">if</span> (_alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>() < 2)</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  {</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  }</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="comment">// caches the most often used mass - smallest mass</span></div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> smallestMass = _alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">getWeight</a>(0), secondMass = _alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">getWeight</a>(1);</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="comment">// initializes table: infinity everywhere except in the first field of every column</span></div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  _ertable.reserve(_alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>());</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  _ertable.assign(_alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>(), std::vector<value_type>(smallestMass, _infty));</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> i = 0; i < _alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>(); ++i)</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  {</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  _ertable[i][0] = 0;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  }</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="comment">// initializes witness vector</span></div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  _witnessVector.resize(smallestMass);</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span> </div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="comment">// fills second column (the first one is already correct)</span></div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> it_inc = secondMass % smallestMass, witness = 1;</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="comment">//typename residues_table_row_type::iterator it = _ertable[1].begin() + it_inc;</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass = secondMass;</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="comment">// initializes counter to create a witness vector</span></div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a> counter = 0;</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> it_i = it_inc;</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="keywordflow">while</span> (it_i != 0)</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  {</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  _ertable[1][it_i] = mass;</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  mass += secondMass;</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  ++counter;</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  _witnessVector[it_i] = std::make_pair(witness, counter);</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="comment">//std::cerr << "BLA: " << counter << " " << &_ertable[1][0] << " " << it - _ertable[1].begin() << " " << _ertable[1].size() << std::endl;</span></div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  it_i += it_inc;</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">if</span> (it_i >= _ertable[1].size())</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  {</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  it_i -= _ertable[1].size();</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  }</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="comment">// fills cache variables for i==1</span></div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> d = <a class="code" href="group__MathFunctionsMisc.html#ga1cb9666a99e571c3fa1eb07c546bdf92">Math::gcd</a>(smallestMass, secondMass);</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  _lcms[1] = secondMass * smallestMass / d;</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  _mass_in_lcms[1] = smallestMass / d;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span> </div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="comment">// fills remaining table. i is the column index.</span></div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> i = 2; i < _alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">size</a>(); ++i)</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  {</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="comment">// caches often used i-th alphabet mass</span></div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> currentMass = _alphabet.<a class="code" href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">getWeight</a>(i);</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span> </div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> d = <a class="code" href="group__MathFunctionsMisc.html#ga1cb9666a99e571c3fa1eb07c546bdf92">Math::gcd</a>(smallestMass, currentMass);</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span> </div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="comment">// fills cache for various variables.</span></div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="comment">// note that values for i==0 are never assigned since they're unused anyway.</span></div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  _lcms[i] = currentMass * smallestMass / d;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  _mass_in_lcms[i] = smallestMass / d;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span> </div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="comment">// Nijenhuis' improvement: Is currentMass composable with smaller alphabet?</span></div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keywordflow">if</span> (currentMass >= _ertable[i - 1][currentMass % smallestMass])</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  {</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  _ertable[i] = _ertable[i - 1];</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  }</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span> </div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & prev_column = _ertable[i - 1];</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">residues_table_row_type</a> & cur_column = _ertable[i];</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span> </div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordflow">if</span> (d == 1)</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  {</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <span class="comment">// This loop is for the case that the gcd is 1. The optimization used below</span></div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="comment">// is not applicable here.</span></div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span> </div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="comment">// p_inc is used to change residue (p) efficiently</span></div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> p_inc = currentMass % smallestMass;</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> </div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  <span class="comment">// n is the value that will be written into the table</span></div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> n = 0;</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  <span class="comment">// current residue (in paper variable 'r' is used)</span></div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> p = 0;</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="comment">// counter for creation of witness vector</span></div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a> counter = 0;</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> </div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> m = smallestMass; m > 0; --m)</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  {</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  n += currentMass;</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  p += p_inc;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  ++counter;</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="keywordflow">if</span> (p >= smallestMass)</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  {</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  p -= smallestMass;</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  }</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordflow">if</span> (n > prev_column[p])</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  {</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  n = prev_column[p];</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  counter = 0;</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  }</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  {</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  _witnessVector[p] = std::make_pair(i, counter);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  }</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  cur_column[p] = n;</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  }</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  }</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  {</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="comment">// If we're here, the gcd is not 1. We can use the following cache-optimized</span></div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="comment">// version of the algorithm. The trick is to put the iteration over all</span></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">// residue classes into the _inner_ loop.</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="comment">// One could see it as going through one column in blocks which are gcd entries long.</span></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> cur = currentMass % smallestMass;</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> prev = 0;</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> p_inc = cur - d;</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <span class="comment">// counters for creation of one witness vector</span></div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  std::vector<decomposition_value_type> counters(smallestMass);</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> </div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  <span class="comment">// copies first block from prev_column to cur_column</span></div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> j = 1; j < d; ++j)</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  {</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  cur_column[j] = prev_column[j];</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> </div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  <span class="comment">// first loop: goes through all blocks, updating cur_column for the first time.</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> m = smallestMass / d; m > 1; m--)</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  {</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <span class="comment">// r: current residue class</span></div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> r = 0; r < d; r++)</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  {</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span> </div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  ++counters[cur];</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordflow">if</span> (cur_column[prev] + currentMass > prev_column[cur])</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  {</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  cur_column[cur] = prev_column[cur];</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  counters[cur] = 0;</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  }</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  {</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  cur_column[cur] = cur_column[prev] + currentMass;</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  _witnessVector[cur] = std::make_pair(i, counters[cur]);</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  }</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span> </div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  prev++;</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  cur++;</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  }</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span> </div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  prev = cur - d;</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> </div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <span class="comment">// this does: cur = (cur + currentMass) % smallestMass - d;</span></div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  cur += p_inc;</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="keywordflow">if</span> (cur >= smallestMass)</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  {</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  cur -= smallestMass;</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  }</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  }</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> </div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  <span class="comment">// second loop:</span></div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  <span class="keywordtype">bool</span> cont = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="keywordflow">while</span> (cont)</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  {</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  cont = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  prev++;</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  cur++;</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  ++counters[cur];</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> r = 1; r < d; ++r)</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  {</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keywordflow">if</span> (cur_column[prev] + currentMass < cur_column[cur])</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  {</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  cur_column[cur] = cur_column[prev] + currentMass;</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  cont = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  _witnessVector[cur] = std::make_pair(i, counters[cur]);</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  }</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  {</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  counters[cur] = 0;</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  }</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  prev++;</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  cur++;</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  }</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  prev = cur - d;</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span> </div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  cur += p_inc;</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  <span class="keywordflow">if</span> (cur >= smallestMass)</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  {</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  cur -= smallestMass;</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  }</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  }</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  }</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> </div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  }</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  }</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span> </div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac3e4c66ba43e52eff0a75edeca5a54fd">IntegerMassDecomposer<ValueType, DecompositionValueType>::</a></div>
<div class="line"><a name="l00419"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac3e4c66ba43e52eff0a75edeca5a54fd"> 419</a></span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac3e4c66ba43e52eff0a75edeca5a54fd"> exist</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass)</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  {</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span> </div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> residue = ertable_.back().at(mass % alphabet_.getWeight(0));</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="keywordflow">return</span> residue != infty_ && mass >= residue;</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  }</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span> </div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">IntegerMassDecomposer<ValueType, DecompositionValueType>::decomposition_type</a></div>
<div class="line"><a name="l00428"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a156de4a736fd7cde318ab9da993a0d25"> 428</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a156de4a736fd7cde318ab9da993a0d25">IntegerMassDecomposer<ValueType, DecompositionValueType>::getDecomposition</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass)</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  {</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span> </div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a> decomposition;</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keywordflow">if</span> (!this->exist(mass))</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  {</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="keywordflow">return</span> decomposition;</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  }</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span> </div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  decomposition.reserve(alphabet_.size());</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  decomposition.resize(alphabet_.size());</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> </div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="comment">// initial mass residue: in FIND-ONE algorithm in paper corresponds variable "r"</span></div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> r = mass % alphabet_.getWeight(0);</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> m = ertable_.back().at(r);</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span> </div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  decomposition.at(0) = <span class="keyword">static_cast<</span><a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a><span class="keyword">></span></div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  ((mass - m) / alphabet_.getWeight(0));</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span> </div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keywordflow">while</span> (m != 0)</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  {</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> i = witness_vector_.at(r).first;</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a> j = witness_vector_.at(r).second;</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  decomposition.at(i) += j;</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <span class="keywordflow">if</span> (m < j * alphabet_.getWeight(i))</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  {</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  }</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  m -= j * alphabet_.getWeight(i);</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  r = m % alphabet_.getWeight(0);</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  }</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  <span class="keywordflow">return</span> decomposition;</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  }</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span> </div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">IntegerMassDecomposer<ValueType, DecompositionValueType>::decompositions_type</a></div>
<div class="line"><a name="l00464"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#addaeefa17c7915094e26b3a2f564643a"> 464</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#addaeefa17c7915094e26b3a2f564643a">IntegerMassDecomposer<ValueType, DecompositionValueType>::getAllDecompositions</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass)</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  {</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">decompositions_type</a> decompositionsStore;</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a> decomposition(alphabet_.size());</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  collectDecompositionsRecursively_(mass, alphabet_.size() - 1, decomposition, decompositionsStore);</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordflow">return</span> decompositionsStore;</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  }</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> </div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0">IntegerMassDecomposer<ValueType, DecompositionValueType>::</a></div>
<div class="line"><a name="l00474"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0"> 474</a></span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0"> collectDecompositionsRecursively_</a>(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">size_type</a> alphabetMassIndex,</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">decomposition_type</a> decomposition, <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">decompositions_type</a> & decompositionsStore)</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  {</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <span class="keywordflow">if</span> (alphabetMassIndex == 0)</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  {</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> numberOfMasses0 = mass / alphabet_.getWeight(0);</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  <span class="keywordflow">if</span> (numberOfMasses0 * alphabet_.getWeight(0) == mass)</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  {</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  decomposition[0] = <span class="keyword">static_cast<</span><a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a><span class="keyword">></span>(numberOfMasses0);</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  decompositionsStore.push_back(decomposition);</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  }</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  }</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span> </div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  <span class="comment">// tested: caching these values gives us 15% better performance, at least</span></div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <span class="comment">// with aminoacid-mono.masses</span></div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> lcm = lcms_[alphabetMassIndex];</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass_in_lcm = mass_in_lcms_[alphabetMassIndex]; <span class="comment">// this is alphabet mass divided by gcd</span></div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span> </div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass_mod_alphabet0 = mass % alphabet_.getWeight(0); <span class="comment">// trying to avoid modulo</span></div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass_mod_decrement = alphabet_.getWeight(alphabetMassIndex) % alphabet_.getWeight(0);</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span> </div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> i = 0; i < mass_in_lcm; ++i)</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  {</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  <span class="comment">// here is the conversion from value_type to decomposition_value_type</span></div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  decomposition[alphabetMassIndex] = <span class="keyword">static_cast<</span><a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">decomposition_value_type</a><span class="keyword">></span>(i);</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span> </div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  <span class="comment">// this check is needed because mass could have unsigned type and after reduction on i*alphabetMass will be still be positive but huge</span></div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  <span class="comment">// and that will end up in infinite loop</span></div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  <span class="keywordflow">if</span> (mass < i * alphabet_.getWeight(alphabetMassIndex))</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  {</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  }</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span> </div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  <span class="comment">// r: current residue class. will stay the same in the following loop</span></div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> r = ertable_[alphabetMassIndex - 1][mass_mod_alphabet0];</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> </div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="comment">// TODO: if infty was std::numeric_limits<...>... the following 'if' would not be necessary</span></div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordflow">if</span> (r != infty_)</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  {</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> m = mass - i * alphabet_.getWeight(alphabetMassIndex); m >= r; m -= lcm)</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  {</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  <span class="comment">// the condition of the 'for' loop (m >= r) and decrementing the mass</span></div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="comment">// in steps of the lcm ensures that m is decomposable. Therefore</span></div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  <span class="comment">// the recursion will result in at least one witness.</span></div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  collectDecompositionsRecursively_(m, alphabetMassIndex - 1, decomposition, decompositionsStore);</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  decomposition[alphabetMassIndex] += mass_in_lcm;</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  <span class="comment">// this check is needed because mass could have unsigned type and after reduction on i*alphabetMass will be still be positive but huge</span></div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  <span class="comment">// and that will end up in infinite loop</span></div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  <span class="keywordflow">if</span> (m < lcm)</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  {</div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  }</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  }</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  }</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  <span class="comment">// subtle way of changing the modulo, instead of plain calculation it from (mass - i*currentAlphabetMass) % alphabetMass0 every time</span></div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="keywordflow">if</span> (mass_mod_alphabet0 < mass_mod_decrement)</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  {</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  mass_mod_alphabet0 += alphabet_.getWeight(0) - mass_mod_decrement;</div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  }</div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  {</div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  mass_mod_alphabet0 -= mass_mod_decrement;</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span>  }</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  }</div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span> </div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  }</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span> </div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> ValueType, <span class="keyword">typename</span> DecompositionValueType></div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">IntegerMassDecomposer<ValueType, DecompositionValueType>::decomposition_value_type</a> <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html">IntegerMassDecomposer</a><ValueType,</div>
<div class="line"><a name="l00552"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a77703beb2bdc9ac53738efe778f4f9de"> 552</a></span>  DecompositionValueType>::getNumberOfDecompositions(<a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">value_type</a> mass)</div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  {</div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  <span class="keywordflow">return</span> <span class="keyword">static_cast<</span>typename <a class="code" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">IntegerMassDecomposer<ValueType, DecompositionValueType>::decomposition_value_type</a><span class="keyword">></span>(getAllDecompositions(mass).size());</div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  }</div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span> </div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  } <span class="comment">// namespace ims</span></div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span> </div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span> <span class="preprocessor">#endif // OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_INTEGERMASSDECOMPOSER_H</span></div>
<div class="ttc" id="MathFunctions_8h_html"><div class="ttname"><a href="MathFunctions_8h.html">MathFunctions.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a1d9e5a439d77c54cd45e38e8200de7b3"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1d9e5a439d77c54cd45e38e8200de7b3">OpenMS::ims::IntegerMassDecomposer::IntegerMassDecomposer</a></div><div class="ttdeci">IntegerMassDecomposer(const Weights &alphabet)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:205</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a45d9c408bff0b38d460892f7f1bf2d3c"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a45d9c408bff0b38d460892f7f1bf2d3c">OpenMS::ims::IntegerMassDecomposer::residues_table_type</a></div><div class="ttdeci">std::vector< residues_table_row_type > residues_table_type</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:146</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a1bfed7da2c2658de7160d1e3d9f26641"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a1bfed7da2c2658de7160d1e3d9f26641">OpenMS::ims::IntegerMassDecomposer::infty_</a></div><div class="ttdeci">value_type infty_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:176</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1MassDecomposer_html_a7e925095614a18db84f21a0de507edb5"><div class="ttname"><a href="classOpenMS_1_1ims_1_1MassDecomposer.html#a7e925095614a18db84f21a0de507edb5">OpenMS::ims::MassDecomposer::value_type</a></div><div class="ttdeci">ValueType value_type</div><div class="ttdef"><b>Definition:</b> MassDecomposer.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1Weights_html"><div class="ttname"><a href="classOpenMS_1_1ims_1_1Weights.html">OpenMS::ims::Weights</a></div><div class="ttdoc">Represents a set of weights (double values and scaled with a certain precision their integer counterp...</div><div class="ttdef"><b>Definition:</b> Weights.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1MassDecomposer_html_ad16c2b9e2e514b3fa56f73f3fb95b2b5"><div class="ttname"><a href="classOpenMS_1_1ims_1_1MassDecomposer.html#ad16c2b9e2e514b3fa56f73f3fb95b2b5">OpenMS::ims::MassDecomposer::decomposition_type</a></div><div class="ttdeci">std::vector< decomposition_value_type > decomposition_type</div><div class="ttdef"><b>Definition:</b> MassDecomposer.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a125032f89f061df641204527fff3616d"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a125032f89f061df641204527fff3616d">OpenMS::ims::IntegerMassDecomposer::lcms_</a></div><div class="ttdeci">residues_table_row_type lcms_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a474a1a3783551e0ee08ff438655d3510"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a474a1a3783551e0ee08ff438655d3510">OpenMS::ims::IntegerMassDecomposer::witness_vector_type</a></div><div class="ttdeci">std::vector< std::pair< size_type, decomposition_value_type > > witness_vector_type</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:136</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html">OpenMS::ims::IntegerMassDecomposer</a></div><div class="ttdoc">Implements MassDecomposer interface using algorithm and data structures described in paper &quot;Efficient...</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a77703beb2bdc9ac53738efe778f4f9de"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a77703beb2bdc9ac53738efe778f4f9de">OpenMS::ims::IntegerMassDecomposer::getNumberOfDecompositions</a></div><div class="ttdeci">virtual decomposition_value_type getNumberOfDecompositions(value_type mass)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:552</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a9b4deccbe86a3bd1c33944ff9fbe02ee"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a9b4deccbe86a3bd1c33944ff9fbe02ee">OpenMS::ims::IntegerMassDecomposer::size_type</a></div><div class="ttdeci">decomposition_type::size_type size_type</div><div class="ttdoc">Type of decomposition&#39;s size. </div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1MassDecomposer_html_aa2fe611aa3c8baa38be4ee3ddfa2d524"><div class="ttname"><a href="classOpenMS_1_1ims_1_1MassDecomposer.html#aa2fe611aa3c8baa38be4ee3ddfa2d524">OpenMS::ims::MassDecomposer::decompositions_type</a></div><div class="ttdeci">std::vector< decomposition_type > decompositions_type</div><div class="ttdef"><b>Definition:</b> MassDecomposer.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_af76088c84d7e9b64dcc365c545b5811f"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#af76088c84d7e9b64dcc365c545b5811f">OpenMS::ims::IntegerMassDecomposer::fillExtendedResidueTable_</a></div><div class="ttdeci">void fillExtendedResidueTable_(const Weights &_alphabet, residues_table_row_type &_lcms, residues_table_row_type &_mass_in_lcms, const value_type _infty, witness_vector_type &_witness_vector, residues_table_type &_ertable)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:220</div></div>
<div class="ttc" id="MassDecomposer_8h_html"><div class="ttname"><a href="MassDecomposer_8h.html">MassDecomposer.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_ac2b1862d5d32c8c31bdabdeb819b088e"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac2b1862d5d32c8c31bdabdeb819b088e">OpenMS::ims::IntegerMassDecomposer::decomposition_value_type</a></div><div class="ttdeci">MassDecomposer< ValueType, DecompositionValueType >::decomposition_value_type decomposition_value_type</div><div class="ttdoc">Type of decomposition value. </div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:79</div></div>
<div class="ttc" id="Weights_8h_html"><div class="ttname"><a href="Weights_8h.html">Weights.h</a></div></div>
<div class="ttc" id="group__MathFunctionsMisc_html_ga1cb9666a99e571c3fa1eb07c546bdf92"><div class="ttname"><a href="group__MathFunctionsMisc.html#ga1cb9666a99e571c3fa1eb07c546bdf92">OpenMS::Math::gcd</a></div><div class="ttdeci">T gcd(T a, T b)</div><div class="ttdoc">Returns the greatest common divisor (gcd) of two numbers by applying the Euclidean algorithm...</div><div class="ttdef"><b>Definition:</b> MathFunctions.h:166</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a877ef1620102af87a501c88795f032c0"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a877ef1620102af87a501c88795f032c0">OpenMS::ims::IntegerMassDecomposer::residues_table_row_type</a></div><div class="ttdeci">std::vector< value_type > residues_table_row_type</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:141</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a4ddf0cd39df573dcf07184c8a22fcee0"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0">OpenMS::ims::IntegerMassDecomposer::collectDecompositionsRecursively_</a></div><div class="ttdeci">void collectDecompositionsRecursively_(value_type mass, size_type alphabetMassIndex, decomposition_type decomposition, decompositions_type &decompositionsStore)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:474</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_ac3e4c66ba43e52eff0a75edeca5a54fd"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac3e4c66ba43e52eff0a75edeca5a54fd">OpenMS::ims::IntegerMassDecomposer::exist</a></div><div class="ttdeci">virtual bool exist(value_type mass)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:419</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1MassDecomposer_html"><div class="ttname"><a href="classOpenMS_1_1ims_1_1MassDecomposer.html">OpenMS::ims::MassDecomposer</a></div><div class="ttdoc">An inteface to handle decomposing of integer values/masses over a set of integer weights (alphabet)...</div><div class="ttdef"><b>Definition:</b> MassDecomposer.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_ac71d129ec141185224a1afa14afcd79b"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ac71d129ec141185224a1afa14afcd79b">OpenMS::ims::IntegerMassDecomposer::ertable_</a></div><div class="ttdeci">residues_table_type ertable_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_addaeefa17c7915094e26b3a2f564643a"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#addaeefa17c7915094e26b3a2f564643a">OpenMS::ims::IntegerMassDecomposer::getAllDecompositions</a></div><div class="ttdeci">virtual decompositions_type getAllDecompositions(value_type mass)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:464</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a89b1d9bfa3bed832f538e7f136d565b3"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a89b1d9bfa3bed832f538e7f136d565b3">OpenMS::ims::IntegerMassDecomposer::mass_in_lcms_</a></div><div class="ttdeci">residues_table_row_type mass_in_lcms_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:171</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a156de4a736fd7cde318ab9da993a0d25"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a156de4a736fd7cde318ab9da993a0d25">OpenMS::ims::IntegerMassDecomposer::getDecomposition</a></div><div class="ttdeci">virtual decomposition_type getDecomposition(value_type mass)</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:428</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1Weights_html_a5ba2939211720dbf3f5e83a3e9bcd23a"><div class="ttname"><a href="classOpenMS_1_1ims_1_1Weights.html#a5ba2939211720dbf3f5e83a3e9bcd23a">OpenMS::ims::Weights::getWeight</a></div><div class="ttdeci">weight_type getWeight(size_type i) const </div><div class="ttdef"><b>Definition:</b> Weights.h:136</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1MassDecomposer_html_a7346a87f8ad822456061ff74cbaffa3b"><div class="ttname"><a href="classOpenMS_1_1ims_1_1MassDecomposer.html#a7346a87f8ad822456061ff74cbaffa3b">OpenMS::ims::MassDecomposer::decomposition_value_type</a></div><div class="ttdeci">DecompositionValueType decomposition_value_type</div><div class="ttdef"><b>Definition:</b> MassDecomposer.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a154503c35e5f3d8aab8ea82d4671fa39"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a154503c35e5f3d8aab8ea82d4671fa39">OpenMS::ims::IntegerMassDecomposer::alphabet_</a></div><div class="ttdeci">Weights alphabet_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:151</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_a95cbaca5e86cbc81cc2a9fba1ea84984"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a95cbaca5e86cbc81cc2a9fba1ea84984">OpenMS::ims::IntegerMassDecomposer::decomposition_type</a></div><div class="ttdeci">MassDecomposer< ValueType, DecompositionValueType >::decomposition_type decomposition_type</div><div class="ttdoc">Type of decomposition. </div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:82</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_acd94d537e8cb517f3f767450b3f9be48"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#acd94d537e8cb517f3f767450b3f9be48">OpenMS::ims::IntegerMassDecomposer::decompositions_type</a></div><div class="ttdeci">MassDecomposer< ValueType, DecompositionValueType >::decompositions_type decompositions_type</div><div class="ttdoc">Type of container for many decompositions. </div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:85</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1Weights_html_a503ab01f6c0142145d3434f6924714e7"><div class="ttname"><a href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">OpenMS::ims::Weights::size</a></div><div class="ttdeci">size_type size() const </div><div class="ttdef"><b>Definition:</b> Weights.h:125</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_aa9d4c7783d20be3e473d0031c372d8f2"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#aa9d4c7783d20be3e473d0031c372d8f2">OpenMS::ims::IntegerMassDecomposer::witness_vector_</a></div><div class="ttdeci">witness_vector_type witness_vector_</div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1ims_1_1IntegerMassDecomposer_html_ad3aec08a6684491215ab07934cd07db8"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#ad3aec08a6684491215ab07934cd07db8">OpenMS::ims::IntegerMassDecomposer::value_type</a></div><div class="ttdeci">MassDecomposer< ValueType, DecompositionValueType >::value_type value_type</div><div class="ttdoc">Type of value to be decomposed. </div><div class="ttdef"><b>Definition:</b> IntegerMassDecomposer.h:76</div></div>
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