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<a href="InterpolationModel_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
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<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_INTERPOLATIONMODEL_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_INTERPOLATIONMODEL_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="BaseModel_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="LinearInterpolation_8h.html">OpenMS/MATH/MISC/LinearInterpolation.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;{</div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html">   55</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> :</div>
<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;1&gt;</div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;  {</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#acbd54f28a23dc263a3c81b7c45a3e1e1">   60</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#acbd54f28a23dc263a3c81b7c45a3e1e1">IntensityType</a>;</div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a12b8b50c9639a9166153fbd19047edb3">   61</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1DPosition.html">DPosition&lt;1&gt;</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a12b8b50c9639a9166153fbd19047edb3">PositionType</a>;</div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a063d40a3528749f1a905ab04d76387e0">   62</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a063d40a3528749f1a905ab04d76387e0">CoordinateType</a>;</div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a6cbac443b10246255a7bdb280dfd821b">   63</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Math_1_1LinearInterpolation.html">Math::LinearInterpolation&lt;DoubleReal&gt;</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a6cbac443b10246255a7bdb280dfd821b">LinearInterpolation</a>;</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a589eae725e91e121d22939ca69c72e59">   66</a></span>&#160;    <a class="code" href="classOpenMS_1_1InterpolationModel.html#a589eae725e91e121d22939ca69c72e59">InterpolationModel</a>() :</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;1&gt;(),</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;      interpolation_()</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    {</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;      this-&gt;defaults_.setValue(<span class="stringliteral">&quot;interpolation_step&quot;</span>, 0.1, <span class="stringliteral">&quot;Sampling rate for the interpolation of the model function &quot;</span>);</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;      this-&gt;defaults_.setValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>, 1.0, <span class="stringliteral">&quot;Scaling factor used to adjust the model distribution to the intensities of the data&quot;</span>);</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    }</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;</div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a7d4af31678001da534843a195d0edb8e">   75</a></span>&#160;    <a class="code" href="classOpenMS_1_1InterpolationModel.html#a7d4af31678001da534843a195d0edb8e">InterpolationModel</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> &amp; source) :</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;1&gt;(source),</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;      interpolation_(source.interpolation_),</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;      interpolation_step_(source.interpolation_step_),</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;      scaling_(source.scaling_)</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    {</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    }</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#aecc4cc37400b4c531d2a295cc1d5a31b">   84</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#aecc4cc37400b4c531d2a295cc1d5a31b">~InterpolationModel</a>()</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    {</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    }</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a6fb5454bda7b2eea8d3df3a6ae58c16b">   89</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> &amp; <a class="code" href="classOpenMS_1_1InterpolationModel.html#a6fb5454bda7b2eea8d3df3a6ae58c16b">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> &amp; source)</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    {</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;      <span class="keywordflow">if</span> (&amp;source == <span class="keyword">this</span>) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html#aa77887521d929a9565d179067f19b4ef">BaseModel&lt;1&gt;::operator=</a>(source);</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;      interpolation_step_ = source.<a class="code" href="classOpenMS_1_1InterpolationModel.html#a96c09b8586bf3bb69f3917a25a974479">interpolation_step_</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;      interpolation_ = source.<a class="code" href="classOpenMS_1_1InterpolationModel.html#a8ff4036b99ae6e5ae4dc98bf9606c068">interpolation_</a>;</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;      scaling_ = source.<a class="code" href="classOpenMS_1_1InterpolationModel.html#a7fb7739321bdc6bc8b7785649a210d56">scaling_</a>;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;    }</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#ac4534e8323ba5dc157bc4bba75096d50">  102</a></span>&#160;    <a class="code" href="classdouble.html">IntensityType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#ac4534e8323ba5dc157bc4bba75096d50">getIntensity</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DPosition.html">PositionType</a> &amp; pos)<span class="keyword"> const</span></div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;      <span class="keywordflow">return</span> interpolation_.value(pos[0]);</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    }</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#ae98d0b8da755f32e8a55581c8f2eae80">  108</a></span>&#160;    <a class="code" href="classdouble.html">IntensityType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#ae98d0b8da755f32e8a55581c8f2eae80">getIntensity</a>(<a class="code" href="classdouble.html">CoordinateType</a> coord)<span class="keyword"> const</span></div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;      <span class="keywordflow">return</span> interpolation_.value(coord);</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    }</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a60bc454fdb5698b36405780782e7a727">  114</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Math_1_1LinearInterpolation.html">LinearInterpolation</a> &amp; <a class="code" href="classOpenMS_1_1InterpolationModel.html#a60bc454fdb5698b36405780782e7a727">getInterpolation</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;      <span class="keywordflow">return</span> interpolation_;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    }</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;</div>
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a16ee3682aff4259ed7401ce8f1c1c51a">  124</a></span>&#160;    <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a16ee3682aff4259ed7401ce8f1c1c51a">getScalingFactor</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;      <span class="keywordflow">return</span> scaling_;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    }</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;</div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a90f98af937fa9350cdc4e5555bfbc7d5">  134</a></span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a90f98af937fa9350cdc4e5555bfbc7d5">setOffset</a>(<a class="code" href="classdouble.html">CoordinateType</a> offset)</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    {</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;      interpolation_.setOffset(offset);</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    }</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;</div>
<div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a9c816e92514bcabd7b6cee5cdddad7c2">  140</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a9c816e92514bcabd7b6cee5cdddad7c2">getSamples</a>(<a class="code" href="classOpenMS_1_1BaseModel.html#a8846ea396fc3690dc69387998cf7cb85">SamplesType</a> &amp; cont)<span class="keyword"> const</span></div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;      cont = <a class="code" href="classOpenMS_1_1BaseModel.html#a8846ea396fc3690dc69387998cf7cb85">SamplesType</a>();</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel&lt;1&gt;::PeakType</a> peak;</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i &lt; interpolation_.getData().size(); ++i)</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;      {</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;        peak.setIntensity(interpolation_.getData()[i]);</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;        peak.getPosition()[0] = interpolation_.index2key(i);</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        cont.push_back(peak);</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;      }</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    }</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;</div>
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#aa6ff364ffcd9547133c9a10f6a147595">  153</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#aa6ff364ffcd9547133c9a10f6a147595">getCenter</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;      <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1NotImplemented.html">Exception::NotImplemented</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__);</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a>();           <span class="comment">// we will never get here, but this avoids a warning</span></div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    }</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;</div>
<div class="line"><a name="l00160"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a60fdd8cda4e233752f186e1b0c735440">  160</a></span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a60fdd8cda4e233752f186e1b0c735440">setSamples</a>()</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    {</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;      <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1NotImplemented.html">Exception::NotImplemented</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__);</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    }</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;</div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a8cb26c3ecdd2a5ddfbc97bf9ef3af165">  170</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a8cb26c3ecdd2a5ddfbc97bf9ef3af165">setInterpolationStep</a>(<a class="code" href="classdouble.html">CoordinateType</a> interpolation_step)</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    {</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;      interpolation_step_ = interpolation_step;</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;      this-&gt;param_.setValue(<span class="stringliteral">&quot;interpolation_step&quot;</span>, interpolation_step_);</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;    }</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;</div>
<div class="line"><a name="l00176"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a469daa598e6a7d2b755bd36826beec49">  176</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a469daa598e6a7d2b755bd36826beec49">setScalingFactor</a>(<a class="code" href="classdouble.html">CoordinateType</a> scaling)</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    {</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;      scaling_ = scaling;</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;      this-&gt;param_.setValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>, scaling_);</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    }</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;</div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00183"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a8ff4036b99ae6e5ae4dc98bf9606c068">  183</a></span>&#160;    <a class="code" href="classOpenMS_1_1Math_1_1LinearInterpolation.html">LinearInterpolation</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a8ff4036b99ae6e5ae4dc98bf9606c068">interpolation_</a>;</div>
<div class="line"><a name="l00184"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a96c09b8586bf3bb69f3917a25a974479">  184</a></span>&#160;    <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a96c09b8586bf3bb69f3917a25a974479">interpolation_step_</a>;</div>
<div class="line"><a name="l00185"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#a7fb7739321bdc6bc8b7785649a210d56">  185</a></span>&#160;    <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1InterpolationModel.html#a7fb7739321bdc6bc8b7785649a210d56">scaling_</a>;</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno"><a class="line" href="classOpenMS_1_1InterpolationModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">  187</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1InterpolationModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">updateMembers_</a>()</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;    {</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt;1&gt;::updateMembers_</a>();</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;      interpolation_step_ = this-&gt;param_.getValue(<span class="stringliteral">&quot;interpolation_step&quot;</span>);</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;      scaling_ = this-&gt;param_.getValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>);</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;    }</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;  };</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;}</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;<span class="preprocessor">#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_INTERPOLATIONMODEL_H</span></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a063d40a3528749f1a905ab04d76387e0"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a063d40a3528749f1a905ab04d76387e0">OpenMS::InterpolationModel::CoordinateType</a></div><div class="ttdeci">DoubleReal CoordinateType</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:62</div></div>
<div class="ttc" id="BaseModel_8h_html"><div class="ttname"><a href="BaseModel_8h.html">BaseModel.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a7d4af31678001da534843a195d0edb8e"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a7d4af31678001da534843a195d0edb8e">OpenMS::InterpolationModel::InterpolationModel</a></div><div class="ttdeci">InterpolationModel(const InterpolationModel &amp;source)</div><div class="ttdoc">copy constructor </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a16ee3682aff4259ed7401ce8f1c1c51a"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a16ee3682aff4259ed7401ce8f1c1c51a">OpenMS::InterpolationModel::getScalingFactor</a></div><div class="ttdeci">CoordinateType getScalingFactor() const </div><div class="ttdoc">get the scaling for the model </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:124</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a12b8b50c9639a9166153fbd19047edb3"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a12b8b50c9639a9166153fbd19047edb3">OpenMS::InterpolationModel::PositionType</a></div><div class="ttdeci">DPosition&lt; 1 &gt; PositionType</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a9c816e92514bcabd7b6cee5cdddad7c2"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a9c816e92514bcabd7b6cee5cdddad7c2">OpenMS::InterpolationModel::getSamples</a></div><div class="ttdeci">void getSamples(SamplesType &amp;cont) const </div><div class="ttdoc">get reasonable set of samples from the model (i.e. for printing) </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:140</div></div>
<div class="ttc" id="LinearInterpolation_8h_html"><div class="ttname"><a href="LinearInterpolation_8h.html">LinearInterpolation.h</a></div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a8ff4036b99ae6e5ae4dc98bf9606c068"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a8ff4036b99ae6e5ae4dc98bf9606c068">OpenMS::InterpolationModel::interpolation_</a></div><div class="ttdeci">LinearInterpolation interpolation_</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:183</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_acbd54f28a23dc263a3c81b7c45a3e1e1"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#acbd54f28a23dc263a3c81b7c45a3e1e1">OpenMS::InterpolationModel::IntensityType</a></div><div class="ttdeci">DoubleReal IntensityType</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html">OpenMS::InterpolationModel</a></div><div class="ttdoc">Abstract class for 1D-models that are approximated using linear interpolation. </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a60bc454fdb5698b36405780782e7a727"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a60bc454fdb5698b36405780782e7a727">OpenMS::InterpolationModel::getInterpolation</a></div><div class="ttdeci">const LinearInterpolation &amp; getInterpolation() const </div><div class="ttdoc">Returns the interpolation class. </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a7fb7739321bdc6bc8b7785649a210d56"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a7fb7739321bdc6bc8b7785649a210d56">OpenMS::InterpolationModel::scaling_</a></div><div class="ttdeci">CoordinateType scaling_</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:185</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_a776f7572fc4f466e9527ca233471920d"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">OpenMS::BaseModel::updateMembers_</a></div><div class="ttdeci">virtual void updateMembers_()</div><div class="ttdoc">This method is used to update extra member variables at the end of the setParameters() method...</div><div class="ttdef"><b>Definition:</b> BaseModel.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a8cb26c3ecdd2a5ddfbc97bf9ef3af165"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a8cb26c3ecdd2a5ddfbc97bf9ef3af165">OpenMS::InterpolationModel::setInterpolationStep</a></div><div class="ttdeci">void setInterpolationStep(CoordinateType interpolation_step)</div><div class="ttdoc">Set the interpolation step for the linear interpolation of the model. </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:170</div></div>
<div class="ttc" id="classOpenMS_1_1Math_1_1LinearInterpolation_html"><div class="ttname"><a href="classOpenMS_1_1Math_1_1LinearInterpolation.html">OpenMS::Math::LinearInterpolation&lt; DoubleReal &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1DPosition_html"><div class="ttname"><a href="classOpenMS_1_1DPosition.html">OpenMS::DPosition&lt; 1 &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_ac4534e8323ba5dc157bc4bba75096d50"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#ac4534e8323ba5dc157bc4bba75096d50">OpenMS::InterpolationModel::getIntensity</a></div><div class="ttdeci">IntensityType getIntensity(const PositionType &amp;pos) const </div><div class="ttdoc">access model predicted intensity at position pos </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a589eae725e91e121d22939ca69c72e59"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a589eae725e91e121d22939ca69c72e59">OpenMS::InterpolationModel::InterpolationModel</a></div><div class="ttdeci">InterpolationModel()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a60fdd8cda4e233752f186e1b0c735440"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a60fdd8cda4e233752f186e1b0c735440">OpenMS::InterpolationModel::setSamples</a></div><div class="ttdeci">virtual void setSamples()</div><div class="ttdoc">set sample/supporting points of interpolation wrt params. </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:160</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_ae98d0b8da755f32e8a55581c8f2eae80"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#ae98d0b8da755f32e8a55581c8f2eae80">OpenMS::InterpolationModel::getIntensity</a></div><div class="ttdeci">IntensityType getIntensity(CoordinateType coord) const </div><div class="ttdoc">access model predicted intensity at position pos </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a469daa598e6a7d2b755bd36826beec49"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a469daa598e6a7d2b755bd36826beec49">OpenMS::InterpolationModel::setScalingFactor</a></div><div class="ttdeci">void setScalingFactor(CoordinateType scaling)</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:176</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a6cbac443b10246255a7bdb280dfd821b"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a6cbac443b10246255a7bdb280dfd821b">OpenMS::InterpolationModel::LinearInterpolation</a></div><div class="ttdeci">Math::LinearInterpolation&lt; DoubleReal &gt; LinearInterpolation</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_aecc4cc37400b4c531d2a295cc1d5a31b"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#aecc4cc37400b4c531d2a295cc1d5a31b">OpenMS::InterpolationModel::~InterpolationModel</a></div><div class="ttdeci">virtual ~InterpolationModel()</div><div class="ttdoc">destructor </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a6fb5454bda7b2eea8d3df3a6ae58c16b"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a6fb5454bda7b2eea8d3df3a6ae58c16b">OpenMS::InterpolationModel::operator=</a></div><div class="ttdeci">virtual InterpolationModel &amp; operator=(const InterpolationModel &amp;source)</div><div class="ttdoc">assignment operator </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_aa6ff364ffcd9547133c9a10f6a147595"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#aa6ff364ffcd9547133c9a10f6a147595">OpenMS::InterpolationModel::getCenter</a></div><div class="ttdeci">virtual CoordinateType getCenter() const </div><div class="ttdoc">&amp;quot;center&amp;quot; of the model, particular definition (depends on the derived model) </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:153</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a90f98af937fa9350cdc4e5555bfbc7d5"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a90f98af937fa9350cdc4e5555bfbc7d5">OpenMS::InterpolationModel::setOffset</a></div><div class="ttdeci">virtual void setOffset(CoordinateType offset)</div><div class="ttdoc">set the offset of the model </div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:134</div></div>
<div class="ttc" id="AdditiveSeries_8C_html_a75145a9f1f2689d0f54565ffbdb1f5d6"><div class="ttname"><a href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a></div><div class="ttdeci">Feature::CoordinateType CoordinateType</div><div class="ttdef"><b>Definition:</b> AdditiveSeries.C:52</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_a96c09b8586bf3bb69f3917a25a974479"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#a96c09b8586bf3bb69f3917a25a974479">OpenMS::InterpolationModel::interpolation_step_</a></div><div class="ttdeci">CoordinateType interpolation_step_</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:184</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html">OpenMS::BaseModel</a></div><div class="ttdoc">Abstract base class for all D-dimensional models. </div><div class="ttdef"><b>Definition:</b> BaseModel.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1InterpolationModel_html_aaf258e1a9846d9b238ee4b3005ad3ee9"><div class="ttname"><a href="classOpenMS_1_1InterpolationModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">OpenMS::InterpolationModel::updateMembers_</a></div><div class="ttdeci">void updateMembers_()</div><div class="ttdoc">This method is used to update extra member variables at the end of the setParameters() method...</div><div class="ttdef"><b>Definition:</b> InterpolationModel.h:187</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_a8846ea396fc3690dc69387998cf7cb85"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#a8846ea396fc3690dc69387998cf7cb85">OpenMS::BaseModel&lt; 1 &gt;::SamplesType</a></div><div class="ttdeci">std::vector&lt; PeakType &gt; SamplesType</div><div class="ttdef"><b>Definition:</b> BaseModel.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_aa77887521d929a9565d179067f19b4ef"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#aa77887521d929a9565d179067f19b4ef">OpenMS::BaseModel::operator=</a></div><div class="ttdeci">virtual BaseModel &amp; operator=(const BaseModel &amp;source)</div><div class="ttdoc">assignment operator </div><div class="ttdef"><b>Definition:</b> BaseModel.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1NotImplemented_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1NotImplemented.html">OpenMS::Exception::NotImplemented</a></div><div class="ttdoc">Not implemented exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:437</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:15 using doxygen 1.8.5</font></TD>
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