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<a href="IsobaricQuantitationMethod_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_ANALYSIS_QUANTITATION_ISOBARICQUANTITATIONMETHOD_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_QUANTITATION_ISOBARICQUANTITATIONMETHOD_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DefaultParamHandler_8h.html">OpenMS/DATASTRUCTURES/DefaultParamHandler.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Matrix_8h.html">OpenMS/DATASTRUCTURES/Matrix.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Peak2D_8h.html">OpenMS/KERNEL/Peak2D.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;{</div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsobaricQuantitationMethod.html">   51</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a> :</div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;  {</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">   59</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">IsobaricChannelInformation</a></div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    {</div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a3a0805eb0c86fd6661f89d474a6cd79a">   62</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a3a0805eb0c86fd6661f89d474a6cd79a">name</a>;</div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a50c6e7ea0d2ec1b504e9de15c1bba146">   64</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a50c6e7ea0d2ec1b504e9de15c1bba146">id</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76d2b0133d83c43dfd8a19286ac55325">   66</a></span>&#160;      <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76d2b0133d83c43dfd8a19286ac55325">description</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#aa3ecdda272ab25ee6e6af1ab79db9097">   68</a></span>&#160;      <a class="code" href="classdouble.html">Peak2D::CoordinateType</a> <a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#aa3ecdda272ab25ee6e6af1ab79db9097">center</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76b27d53482351c17d6a4295e7d75a37">   71</a></span>&#160;      <a class="code" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76b27d53482351c17d6a4295e7d75a37">IsobaricChannelInformation</a>(<span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> name, <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <span class="keywordtype">id</span>, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>&amp; description, <span class="keyword">const</span> <a class="code" href="classdouble.html">Peak2D::CoordinateType</a>&amp; center) :</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        name(name),</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        id(id),</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;        description(description),</div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        center(center)</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;      {</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;      }</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;    };</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <a class="code" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a>();</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a>();</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;</div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">   87</a></span>&#160;    <span class="keyword">typedef</span> std::vector&lt;IsobaricChannelInformation&gt; <a class="code" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a>;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>&amp; getName() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;    <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a>&amp; getChannelInformation() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <span class="keyword">virtual</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getNumberOfChannels() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1Matrix.html">Matrix&lt;double&gt;</a> getIsotopeCorrectionMatrix() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;    </div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    <span class="keyword">virtual</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getReferenceChannel() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    <a class="code" href="classOpenMS_1_1Matrix.html">Matrix&lt;double&gt;</a> stringListToIsotopCorrectionMatrix_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1StringList.html">StringList</a>&amp; stringlist) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;  };</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;} <span class="comment">// namespace</span></div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;<span class="preprocessor">#endif // OPENMS_ANALYSIS_QUANTITATION_ISOBARICQUANTITATIONMETHOD_H</span></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation</a></div><div class="ttdoc">Summary of an isobaric quantitation channel. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:59</div></div>
<div class="ttc" id="Peak2D_8h_html"><div class="ttname"><a href="Peak2D_8h.html">Peak2D.h</a></div></div>
<div class="ttc" id="DefaultParamHandler_8h_html"><div class="ttname"><a href="DefaultParamHandler_8h.html">DefaultParamHandler.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html_a76b27d53482351c17d6a4295e7d75a37"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76b27d53482351c17d6a4295e7d75a37">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation::IsobaricChannelInformation</a></div><div class="ttdeci">IsobaricChannelInformation(const Int name, const Int id, const String &amp;description, const Peak2D::CoordinateType &amp;center)</div><div class="ttdoc">C&amp;#39;tor. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:71</div></div>
<div class="ttc" id="Matrix_8h_html"><div class="ttname"><a href="Matrix_8h.html">Matrix.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html_a50c6e7ea0d2ec1b504e9de15c1bba146"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a50c6e7ea0d2ec1b504e9de15c1bba146">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation::id</a></div><div class="ttdeci">Int id</div><div class="ttdoc">The id of the channel. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:64</div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html_a3a0805eb0c86fd6661f89d474a6cd79a"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a3a0805eb0c86fd6661f89d474a6cd79a">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation::name</a></div><div class="ttdeci">Int name</div><div class="ttdoc">The name of the channel. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:62</div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html_a76d2b0133d83c43dfd8a19286ac55325"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#a76d2b0133d83c43dfd8a19286ac55325">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation::description</a></div><div class="ttdeci">String description</div><div class="ttdoc">Optional description of the channel. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:66</div></div>
<div class="ttc" id="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation_html_aa3ecdda272ab25ee6e6af1ab79db9097"><div class="ttname"><a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#aa3ecdda272ab25ee6e6af1ab79db9097">OpenMS::IsobaricQuantitationMethod::IsobaricChannelInformation::center</a></div><div class="ttdeci">Peak2D::CoordinateType center</div><div class="ttdoc">The expected centroid position of the channel peak in m/z. </div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1StringList_html"><div class="ttname"><a href="classOpenMS_1_1StringList.html">OpenMS::StringList</a></div><div class="ttdoc">String list. </div><div class="ttdef"><b>Definition:</b> StringList.h:56</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1DefaultParamHandler_html"><div class="ttname"><a href="classOpenMS_1_1DefaultParamHandler.html">OpenMS::DefaultParamHandler</a></div><div class="ttdoc">A base class for all classes handling default parameters. </div><div class="ttdef"><b>Definition:</b> DefaultParamHandler.h:90</div></div>
<div class="ttc" id="classOpenMS_1_1IsobaricQuantitationMethod_html"><div class="ttname"><a href="classOpenMS_1_1IsobaricQuantitationMethod.html">OpenMS::IsobaricQuantitationMethod</a></div><div class="ttdoc">Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...</div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1IsobaricQuantitationMethod_html_aa7bb02779188678f665adfdcb4386bab"><div class="ttname"><a href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">OpenMS::IsobaricQuantitationMethod::IsobaricChannelList</a></div><div class="ttdeci">std::vector&lt; IsobaricChannelInformation &gt; IsobaricChannelList</div><div class="ttdef"><b>Definition:</b> IsobaricQuantitationMethod.h:87</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html"><div class="ttname"><a href="classOpenMS_1_1Matrix.html">OpenMS::Matrix&lt; double &gt;</a></div></div>
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