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<a href="IsotopeWaveletParallelFor_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;<span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETPARALLELFOR_H</span></div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETPARALLELFOR_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor">#include &lt;tbb/blocked_range.h&gt;</span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="FeatureFinderAlgorithmIsotopeWavelet_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;</div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#ifndef NULL</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="IsotopeWaveletParallelFor_8h.html#a070d2ce7b6bb7e5c05602aa8c308d0c4">   41</a></span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define NULL 0</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;{</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">typename</span> PeakType, <span class="keyword">typename</span> FeatureType&gt;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  <span class="keyword">class </span>FeatureFinderAlgorithmIsotopeWavelet;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;</div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">typename</span> PeakType, <span class="keyword">typename</span> FeatureType&gt;</div>
<div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsotopeWaveletParallelFor.html">   52</a></span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html">IsotopeWaveletParallelFor</a></div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;  {</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a74709cd43d02095fcf0ebb00f03c0cf7">   57</a></span>&#160;    <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a74709cd43d02095fcf0ebb00f03c0cf7">IsotopeWaveletParallelFor</a>(std::vector&lt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform.html">IsotopeWaveletTransform&lt;PeakType&gt;</a> *&gt; &amp; iwts, <a class="code" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html">FeatureFinderAlgorithmIsotopeWavelet&lt;PeakType, FeatureType&gt;</a> * ff) :</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;      <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a179e641b65498ea7842afee15c415c49">iwts_</a>(iwts), <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>(ff)</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    {</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    }</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;</div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a8e3d01c07ed0cfc820050e4e43e39307">   64</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a8e3d01c07ed0cfc820050e4e43e39307">operator()</a>(<span class="keyword">const</span> tbb::blocked_range&lt;size_t&gt; &amp; r)<span class="keyword"> const</span></div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;      <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> t = r.begin(); t != r.end(); ++t)       <span class="comment">//this will be essentially one iteration</span></div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;      {</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        cudaSetDevice(<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;gpu_ids_[t]);</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <a class="code" href="classOpenMS_1_1IsotopeWaveletTransform.html">IsotopeWaveletTransform&lt;PeakType&gt;</a> * c_iwt = <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a179e641b65498ea7842afee15c415c49">iwts_</a>[t];</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <a class="code" href="classunsigned_01int.html">UInt</a> num_gpus = <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;gpu_ids_.size();</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <a class="code" href="classunsigned_01int.html">UInt</a> block_size = (int)(<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_-&gt;size() / num_gpus); <a class="code" href="classunsigned_01int.html">UInt</a> additional = <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_-&gt;size() - num_gpus * block_size;</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <a class="code" href="classunsigned_01int.html">UInt</a> from = t * block_size;</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;        <a class="code" href="classunsigned_01int.html">UInt</a> up_to = (t &gt;= num_gpus - 1) ? from + block_size + additional : from + block_size;</div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> i = from; i &lt; up_to; ++i)</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        {</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;          <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum&lt;PeakType&gt;</a> &amp; c_ref((*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]);</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;          <span class="keywordflow">if</span> (c_ref.size() &lt;= 1)               <span class="comment">//unable to transform anything</span></div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;          {</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;            <span class="comment">//need to do this atomic</span></div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;            <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;ff_-&gt;setProgress(<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;progress_counter_ += 2);</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;            <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;          }</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;          <span class="keywordtype">bool</span> success = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;          <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html">IsotopeWaveletTransform&lt;PeakType&gt;::TransSpectrum</a> * c_trans(<a class="code" href="IsotopeWaveletParallelFor_8h.html#a070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>);</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;          <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;hr_data_)               <span class="comment">//LowRes data</span></div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;          {</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;Parallel for: here we are&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;            c_trans = <span class="keyword">new</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html">IsotopeWaveletTransform&lt;PeakType&gt;::TransSpectrum</a>(&amp;(*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]);</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;            success = c_iwt-&gt;initializeScanCuda((*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]) == <a class="code" href="namespaceOpenMS_1_1Constants.html#a53aae8780a5fb5cca0b69ece3f1c226c">Constants::CUDA_INIT_SUCCESS</a>;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;            <span class="keywordflow">if</span> (success)</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;            {</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;              <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> = 0; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> &lt; <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;max_charge_; ++<a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a>)</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;              {</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;                c_iwt-&gt;getTransformCuda(*c_trans, <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a>);</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;<span class="preprocessor"></span>                std::stringstream stream;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;                stream &lt;&lt; <span class="stringliteral">&quot;gpu_lowres_&quot;</span> &lt;&lt; ((*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]).getRT() &lt;&lt; <span class="stringliteral">&quot;_&quot;</span> &lt;&lt; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> + 1 &lt;&lt; <span class="stringliteral">&quot;.trans\0&quot;</span>;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;                std::ofstream ofile(stream.str().c_str());</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;                <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> = 0; <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> &lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9d78a687cf2a391198bb3cbc08bc06cb">size</a>(); ++<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>)</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;                {</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;                  ofile &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9c10530886aa26b8dc86fd13846907e1">getMZ</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt;  c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a420f9a11eb02b46c5bb50b13b857ca95">getTransIntensity</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9c10530886aa26b8dc86fd13846907e1">getMZ</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a5891967609c1abd65616dcd4456e41da">getRefIntensity</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; std::endl;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;                }</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;                ofile.close();</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="preprocessor"></span>                std::cout &lt;&lt; <span class="stringliteral">&quot;cuda transform for charge &quot;</span> &lt;&lt; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> + 1 &lt;&lt; <span class="stringliteral">&quot;  O.K. ... &quot;</span>; std::cout.flush();</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;<span class="preprocessor"></span>                <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;ff_-&gt;setProgress(++<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;progress_counter_);</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;                c_iwt-&gt;identifyChargeCuda(*c_trans, i, c, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;intensity_threshold_, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;check_PPMs_);</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;<span class="preprocessor"></span>                std::cout &lt;&lt; <span class="stringliteral">&quot;cuda charge recognition for charge &quot;</span> &lt;&lt; c + 1 &lt;&lt; <span class="stringliteral">&quot; O.K.&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;<span class="preprocessor"></span>                <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;ff_-&gt;setProgress(++<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;progress_counter_);</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;              }</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;              c_iwt-&gt;finalizeScanCuda();</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;            }</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;            <span class="keywordflow">else</span></div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;            {</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;              std::cout &lt;&lt; <span class="stringliteral">&quot;Warning/Error generated at scan &quot;</span> &lt;&lt; i &lt;&lt; <span class="stringliteral">&quot; (&quot;</span> &lt;&lt; ((*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]).getRT() &lt;&lt; <span class="stringliteral">&quot;).&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;            }</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;          }</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;          <span class="keywordflow">else</span>               <span class="comment">//HighRes data</span></div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;          {</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;            c_trans = <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;prepareHRDataCuda(i, c_iwt);</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;            <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> = 0; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> &lt; <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;max_charge_; ++<a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a>)</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;            {</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;              c_iwt-&gt;getTransformCuda(*c_trans, <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a>);</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;<span class="preprocessor"></span>              std::stringstream stream;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;              stream &lt;&lt; <span class="stringliteral">&quot;gpu_highres_&quot;</span> &lt;&lt; ((*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_)[i]).getRT() &lt;&lt; <span class="stringliteral">&quot;_&quot;</span> &lt;&lt; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> + 1 &lt;&lt; <span class="stringliteral">&quot;.trans\0&quot;</span>;</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;              std::ofstream ofile(stream.str().c_str());</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;              <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> = 0; <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> &lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9d78a687cf2a391198bb3cbc08bc06cb">size</a>(); ++<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>)</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;              {</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;                ofile &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9c10530886aa26b8dc86fd13846907e1">getMZ</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt;  c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a420f9a11eb02b46c5bb50b13b857ca95">getTransIntensity</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9c10530886aa26b8dc86fd13846907e1">getMZ</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; <span class="stringliteral">&quot;\t&quot;</span> &lt;&lt; c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a5891967609c1abd65616dcd4456e41da">getRefIntensity</a>(<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>) &lt;&lt; std::endl;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;              }</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;              ofile.close();</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;<span class="preprocessor"></span>              std::cout &lt;&lt; <span class="stringliteral">&quot;cuda transform for charge &quot;</span> &lt;&lt; <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> + 1 &lt;&lt; <span class="stringliteral">&quot;  O.K. ... &quot;</span>; std::cout.flush();</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;<span class="preprocessor"></span>              <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;ff_-&gt;setProgress(++<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;progress_counter_);</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;              c_iwt-&gt;identifyChargeCuda(*c_trans, i, c, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;intensity_threshold_, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;check_PPMs_);</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;<span class="preprocessor"></span>              std::cout &lt;&lt; <span class="stringliteral">&quot;cuda charge recognition for charge &quot;</span> &lt;&lt; c + 1 &lt;&lt; <span class="stringliteral">&quot; O.K.&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;<span class="preprocessor"></span>              <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;ff_-&gt;setProgress(++<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;progress_counter_);</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;            }</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;            c_trans-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#aed2d208f4d304cc6def0a15b73f115bf">destroy</a>();</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;            c_iwt-&gt;finalizeScanCuda();</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;          }</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;          <span class="keyword">delete</span> (c_trans); c_trans = <a class="code" href="IsotopeWaveletParallelFor_8h.html#a070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>;</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;          c_iwt-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform.html#ac0b48539bdee44dbe1368bcfd412f33f">updateBoxStates</a>(*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_, i, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;RT_interleave_, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;real_RT_votes_cutoff_, from, up_to - 1);</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;<span class="preprocessor">#ifdef OPENMS_DEBUG_ISOTOPE_WAVELET</span></div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;<span class="preprocessor"></span>          std::cout &lt;&lt; <span class="stringliteral">&quot;updated box states.&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;          std::cout.flush();</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        }</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;        c_iwt-&gt;<a class="code" href="classOpenMS_1_1IsotopeWaveletTransform.html#ac0b48539bdee44dbe1368bcfd412f33f">updateBoxStates</a>(*<a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;map_, INT_MAX, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;RT_interleave_, <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>-&gt;real_RT_votes_cutoff_);</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;      }</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    }</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;</div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a179e641b65498ea7842afee15c415c49">  182</a></span>&#160;    std::vector&lt;IsotopeWaveletTransform&lt;PeakType&gt; *&gt; &amp; <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a179e641b65498ea7842afee15c415c49">iwts_</a>;</div>
<div class="line"><a name="l00183"></a><span class="lineno"><a class="line" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">  183</a></span>&#160;    <a class="code" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html">FeatureFinderAlgorithmIsotopeWavelet&lt;PeakType, FeatureType&gt;</a> * <a class="code" href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">ff_</a>;</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;  };   <span class="comment">//class</span></div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;} <span class="comment">//namespace</span></div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_a53aae8780a5fb5cca0b69ece3f1c226c"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#a53aae8780a5fb5cca0b69ece3f1c226c">OpenMS::Constants::CUDA_INIT_SUCCESS</a></div><div class="ttdeci">const int CUDA_INIT_SUCCESS</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletConstants.h:92</div></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_a93a8dc068053ec44ee7e45864ef969f7"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">OpenMS::Constants::k</a></div><div class="ttdeci">const double k</div></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletParallelFor_html_a74709cd43d02095fcf0ebb00f03c0cf7"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a74709cd43d02095fcf0ebb00f03c0cf7">OpenMS::IsotopeWaveletParallelFor::IsotopeWaveletParallelFor</a></div><div class="ttdeci">IsotopeWaveletParallelFor(std::vector&lt; IsotopeWaveletTransform&lt; PeakType &gt; * &gt; &amp;iwts, FeatureFinderAlgorithmIsotopeWavelet&lt; PeakType, FeatureType &gt; *ff)</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:57</div></div>
<div class="ttc" id="FeatureFinderAlgorithmIsotopeWavelet_8h_html"><div class="ttname"><a href="FeatureFinderAlgorithmIsotopeWavelet_8h.html">FeatureFinderAlgorithmIsotopeWavelet.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html_aed2d208f4d304cc6def0a15b73f115bf"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#aed2d208f4d304cc6def0a15b73f115bf">OpenMS::IsotopeWaveletTransform::TransSpectrum::destroy</a></div><div class="ttdeci">virtual void destroy()</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:137</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletParallelFor_html_a8e3d01c07ed0cfc820050e4e43e39307"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a8e3d01c07ed0cfc820050e4e43e39307">OpenMS::IsotopeWaveletParallelFor::operator()</a></div><div class="ttdeci">void operator()(const tbb::blocked_range&lt; size_t &gt; &amp;r) const </div><div class="ttdoc">The working horse of the class. The operator initializes the computation on the individual GPU...</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:64</div></div>
<div class="ttc" id="IsotopeWaveletParallelFor_8h_html_a070d2ce7b6bb7e5c05602aa8c308d0c4"><div class="ttname"><a href="IsotopeWaveletParallelFor_8h.html#a070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a></div><div class="ttdeci">#define NULL</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:41</div></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_a8fc6defe4e499b1b9b9c275689e44352"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">OpenMS::Constants::c</a></div><div class="ttdeci">const double c</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html">OpenMS::IsotopeWaveletTransform::TransSpectrum</a></div><div class="ttdoc">Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU...</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:112</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum&lt; PeakType &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html_a9c10530886aa26b8dc86fd13846907e1"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9c10530886aa26b8dc86fd13846907e1">OpenMS::IsotopeWaveletTransform::TransSpectrum::getMZ</a></div><div class="ttdeci">DoubleReal getMZ(const UInt i) const </div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_html"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform.html">OpenMS::IsotopeWaveletTransform</a></div><div class="ttdoc">A class implementing the isotope wavelet transform. If you just want to find features using the isoto...</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:87</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet_html"><div class="ttname"><a href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html">OpenMS::FeatureFinderAlgorithmIsotopeWavelet</a></div><div class="ttdoc">Implements the isotope wavelet feature finder. </div><div class="ttdef"><b>Definition:</b> FeatureFinderAlgorithmIsotopeWavelet.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletParallelFor_html_a179e641b65498ea7842afee15c415c49"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a179e641b65498ea7842afee15c415c49">OpenMS::IsotopeWaveletParallelFor::iwts_</a></div><div class="ttdeci">std::vector&lt; IsotopeWaveletTransform&lt; PeakType &gt; * &gt; &amp; iwts_</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_html_ac0b48539bdee44dbe1368bcfd412f33f"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform.html#ac0b48539bdee44dbe1368bcfd412f33f">OpenMS::IsotopeWaveletTransform::updateBoxStates</a></div><div class="ttdeci">void updateBoxStates(const MSExperiment&lt; PeakType &gt; &amp;map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1)</div><div class="ttdoc">A function keeping track of currently open and closed sweep line boxes. This function is used by the ...</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:2029</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html_a420f9a11eb02b46c5bb50b13b857ca95"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a420f9a11eb02b46c5bb50b13b857ca95">OpenMS::IsotopeWaveletTransform::TransSpectrum::getTransIntensity</a></div><div class="ttdeci">DoubleReal getTransIntensity(const UInt i) const </div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletParallelFor_html"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletParallelFor.html">OpenMS::IsotopeWaveletParallelFor</a></div><div class="ttdoc">A class for distributing the data over several GPUs using Intel Threading Building Blocks...</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletParallelFor_html_a9bf67f1a97c535e8e4bfd4811ca8cdf3"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletParallelFor.html#a9bf67f1a97c535e8e4bfd4811ca8cdf3">OpenMS::IsotopeWaveletParallelFor::ff_</a></div><div class="ttdeci">FeatureFinderAlgorithmIsotopeWavelet&lt; PeakType, FeatureType &gt; * ff_</div><div class="ttdef"><b>Definition:</b> IsotopeWaveletParallelFor.h:183</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html_a9d78a687cf2a391198bb3cbc08bc06cb"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9d78a687cf2a391198bb3cbc08bc06cb">OpenMS::IsotopeWaveletTransform::TransSpectrum::size</a></div><div class="ttdeci">Size size() const </div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:176</div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum_html_a5891967609c1abd65616dcd4456e41da"><div class="ttname"><a href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a5891967609c1abd65616dcd4456e41da">OpenMS::IsotopeWaveletTransform::TransSpectrum::getRefIntensity</a></div><div class="ttdeci">DoubleReal getRefIntensity(const UInt i) const </div><div class="ttdef"><b>Definition:</b> IsotopeWaveletTransform.h:158</div></div>
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