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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_2997ac12008a18000666f01ba7d0ffaa.html">VISUAL</a></li> </ul>
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<a href="LayerData_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Timo Sachsenberg $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Marc Sturm $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_VISUAL_LAYERDATA_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_LAYERDATA_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="FeatureMap_8h.html">OpenMS/KERNEL/FeatureMap.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ConsensusMap_8h.html">OpenMS/KERNEL/ConsensusMap.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="MultiGradient_8h.html">OpenMS/VISUAL/MultiGradient.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="Annotations1DContainer_8h.html">OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="DataFilters_8h.html">OpenMS/FILTERING/DATAREDUCTION/DataFilters.h</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <boost/shared_ptr.hpp></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#include <bitset></span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> {</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html"> 58</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1LayerData.html">LayerData</a></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  {</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6">DataType</a></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  {</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51a4e25c4601807c1f347f02c6538834"> 66</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51a4e25c4601807c1f347f02c6538834">DT_PEAK</a>, </div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a375bb226d9aad6fbe6022960f2a8f008"> 67</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a375bb226d9aad6fbe6022960f2a8f008">DT_FEATURE</a>, </div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51dba0010db221991bce68b24892969c"> 68</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51dba0010db221991bce68b24892969c">DT_CONSENSUS</a>, </div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a55d2b1110fbdef885498d2dcb2711790"> 69</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a55d2b1110fbdef885498d2dcb2711790">DT_CHROMATOGRAM</a>, </div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6ae84aa6fad37956946c285f52c37bb304"> 70</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6ae84aa6fad37956946c285f52c37bb304">DT_IDENT</a>, </div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6aeed6ea354e53d7846af370fa5ac314f9"> 71</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6aeed6ea354e53d7846af370fa5ac314f9">DT_UNKNOWN</a> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  };</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295f"> 75</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295f">Flags</a></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  {</div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa5116e99c737a6e7013719cb478693014"> 77</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa5116e99c737a6e7013719cb478693014">F_HULL</a>, </div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fafc4e9942b014e3c67746b14e0fb29ef7"> 78</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fafc4e9942b014e3c67746b14e0fb29ef7">F_HULLS</a>, </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa889ea25a29b969d4408fd46d8b659c1e"> 79</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa889ea25a29b969d4408fd46d8b659c1e">F_UNASSIGNED</a>, </div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fabde05ad32ec801963a96777027526030"> 80</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fabde05ad32ec801963a96777027526030">P_PRECURSORS</a>, </div>
<div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fae6b764e8463265f1bb084e0ff3666224"> 81</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fae6b764e8463265f1bb084e0ff3666224">P_PROJECTIONS</a>, </div>
<div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295faf29341d5e87edafe32ac4bd05f7ac8f4"> 82</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295faf29341d5e87edafe32ac4bd05f7ac8f4">C_ELEMENTS</a>, </div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa107ebbc4aa8991cf4679e8fbdabee100"> 83</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa107ebbc4aa8991cf4679e8fbdabee100">I_PEPTIDEMZ</a>, </div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa7140842a4caf6cdcf85bdb8cbf9f5273"> 84</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa7140842a4caf6cdcf85bdb8cbf9f5273">SIZE_OF_FLAGS</a></div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  };</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a885d0dcef524a89b4381bb0fa0e4bd9d"> 88</a></span>  std::bitset<SIZE_OF_FLAGS> <a class="code" href="classOpenMS_1_1LayerData.html#a885d0dcef524a89b4381bb0fa0e4bd9d">flags</a>;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9"> 91</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9">LabelType</a></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  {</div>
<div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a30691a3182bd03aa6414fb8e00e123f8"> 93</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a30691a3182bd03aa6414fb8e00e123f8">L_NONE</a>, </div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aea4c115963f513bb9823ebd1ebd2bea9"> 94</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aea4c115963f513bb9823ebd1ebd2bea9">L_INDEX</a>, </div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aa0ebdc7e207d8f3e9ccda2e862ec399b"> 95</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aa0ebdc7e207d8f3e9ccda2e862ec399b">L_META_LABEL</a>, </div>
<div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a2bc9351bb816ab1387441339dc6ab595"> 96</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a2bc9351bb816ab1387441339dc6ab595">L_ID</a>, </div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a0829a2b458a9f4a3a3af1a41ae348940"> 97</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a0829a2b458a9f4a3a3af1a41ae348940">L_ID_ALL</a>, </div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9adaa0b5d69d0f5c795842d6d9118c0369"> 98</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9adaa0b5d69d0f5c795842d6d9118c0369">SIZE_OF_LABEL_TYPE</a></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  };</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> </div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aac52216e255c32f872659e2a9a74bd75"> 102</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> std::string <a class="code" href="classOpenMS_1_1LayerData.html#aac52216e255c32f872659e2a9a74bd75">NamesOfLabelType</a>[<a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9adaa0b5d69d0f5c795842d6d9118c0369">SIZE_OF_LABEL_TYPE</a>];</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#add205a5ccc5c6579b1a3051b7cf8707c"> 105</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap<></a> <a class="code" href="classOpenMS_1_1LayerData.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a>;</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2"> 108</a></span>  <span class="keyword">typedef</span> boost::shared_ptr<FeatureMap<> > <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">FeatureMapSharedPtrType</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a5a94adc6acc9610a0a97444d0abc5ee5"> 111</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> <a class="code" href="classOpenMS_1_1LayerData.html#a5a94adc6acc9610a0a97444d0abc5ee5">ConsensusMapType</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1"> 114</a></span>  <span class="keyword">typedef</span> boost::shared_ptr<ConsensusMap> <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">ConsensusMapSharedPtrType</a>;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a70477e67dc0f0614f20edb48028926f6"> 117</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<></a> <a class="code" href="classOpenMS_1_1LayerData.html#a70477e67dc0f0614f20edb48028926f6">ExperimentType</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e"> 120</a></span>  <span class="keyword">typedef</span> boost::shared_ptr<ExperimentType> <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a>;</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> </div>
<div class="line"><a name="l00125"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ab2417aa308a3c93111240aa99c19f41e"> 125</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ab2417aa308a3c93111240aa99c19f41e">LayerData</a>() :</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a885d0dcef524a89b4381bb0fa0e4bd9d">flags</a>(),</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <a class="code" href="classOpenMS_1_1LayerData.html#aa54a57ae048476d840caf6d4d2c47aa3">visible</a>(true),</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="classOpenMS_1_1LayerData.html#afad0f359fd4d0fafd6cc51d58dc53ba6">flipped</a>(false),</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <a class="code" href="classOpenMS_1_1LayerData.html#ac52af21f72e9a83ef5e2e7076bae30e4">type</a>(<a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6aeed6ea354e53d7846af370fa5ac314f9">DT_UNKNOWN</a>),</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a9a2326f35466e54c36c070829245c557">name</a>(),</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <a class="code" href="classOpenMS_1_1LayerData.html#ae59f2daabb9fbadf96ab4fceb44d6f77">filename</a>(),</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a445a60c263ff4a041acf8d094274b52b">peptides</a>(),</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad754716e5ea05dfffa1e048774643960">param</a>(),</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad5629f5ee1855a5859c05d052207f5f3">gradient</a>(),</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a62e4fa80ed1cbf7e01e3b8d95acb89e3">filters</a>(),</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>(),</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a883ae210392142bdc0c07032eb0fc0d4">modifiable</a>(false),</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a48b46e9dd96a6a268ee4e28d52a3ed87">modified</a>(false),</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="classOpenMS_1_1LayerData.html#abfe1e0a71c43307a45599b4769e1a956">label</a>(<a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a30691a3182bd03aa6414fb8e00e123f8">L_NONE</a>),</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b">features</a>(new <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapType</a>()),</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897">consensus</a>(new <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMapType</a>()),</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">peaks</a>(new <a class="code" href="classOpenMS_1_1MSExperiment.html">ExperimentType</a>()),</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>(0)</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  {</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>.resize(1);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  }</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">ExperimentType::SpectrumType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#abcc5be607a462345e4f7bfe7c66849bc">getCurrentSpectrum</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> </div>
<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a95d449298325e0072bfa7bc92048f4d9"> 152</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">FeatureMapSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a95d449298325e0072bfa7bc92048f4d9">getFeatureMap</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b">features</a>;</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  }</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a8545ca05ab5c44aa4c341230b76438bd"> 158</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">FeatureMapSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a8545ca05ab5c44aa4c341230b76438bd">getFeatureMap</a>()</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  {</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b">features</a>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  }</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a3adc9711df923c3e4ef9fb609963e0f1"> 164</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">ConsensusMapSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a3adc9711df923c3e4ef9fb609963e0f1">getConsensusMap</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897">consensus</a>;</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  }</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> </div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#acb4ebe1e597285706bc118bda303958f"> 170</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">ConsensusMapSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#acb4ebe1e597285706bc118bda303958f">getConsensusMap</a>()</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  {</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897">consensus</a>;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  }</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d"> 176</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">peaks</a>;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  }</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#acbae86675ec05e462a23f8ff560b2047"> 182</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#acbae86675ec05e462a23f8ff560b2047">getPeakData</a>()</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  {</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">peaks</a>;</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  }</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> </div>
<div class="line"><a name="l00188"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a7173f32dd9be22aa12bf7ee1ffa3d6ef"> 188</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a7173f32dd9be22aa12bf7ee1ffa3d6ef">getChromatogramData</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#acc0e1ed05520a0c334cc5bb3c567e5f2">chromatograms</a>;</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  }</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> </div>
<div class="line"><a name="l00194"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a9cfdabc92ea7b1a1ebb81693c16367c5"> 194</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a9cfdabc92ea7b1a1ebb81693c16367c5">getChromatogramData</a>()</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  {</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#acc0e1ed05520a0c334cc5bb3c567e5f2">chromatograms</a>;</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  }</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00200"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a0aa1e478399d7f5a33256e38c854a0ee"> 200</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Annotations1DContainer.html">Annotations1DContainer</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a0aa1e478399d7f5a33256e38c854a0ee">getCurrentAnnotations</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>[<a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>];</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  }</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div>
<div class="line"><a name="l00206"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ac6ceb9b8201493caf67784adab29692c"> 206</a></span>  <a class="code" href="classOpenMS_1_1Annotations1DContainer.html">Annotations1DContainer</a> & <a class="code" href="classOpenMS_1_1LayerData.html#ac6ceb9b8201493caf67784adab29692c">getCurrentAnnotations</a>()</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  {</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>[<a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>];</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  }</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a6d100793fd59ee65094162a2c7ff6db9"> 212</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Annotations1DContainer.html">Annotations1DContainer</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a6d100793fd59ee65094162a2c7ff6db9">getAnnotations</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum_index)<span class="keyword"> const</span></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>[spectrum_index];</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  }</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#afbbfc0d6076c30ad2d3957327e449d50"> 218</a></span>  <a class="code" href="classOpenMS_1_1Annotations1DContainer.html">Annotations1DContainer</a> & <a class="code" href="classOpenMS_1_1LayerData.html#afbbfc0d6076c30ad2d3957327e449d50">getAnnotations</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum_index)</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  {</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>[spectrum_index];</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  }</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> </div>
<div class="line"><a name="l00224"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a048269b86476545d0f93c3098cdf69b7"> 224</a></span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">ExperimentType::SpectrumType</a> & <a class="code" href="classOpenMS_1_1LayerData.html#a048269b86476545d0f93c3098cdf69b7">getCurrentSpectrum</a>()</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  {</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordflow">return</span> (*<a class="code" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">peaks</a>)[<a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>];</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  }</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> </div>
<div class="line"><a name="l00230"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a5230b2777ea2fb065a8a717400879dbb"> 230</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1LayerData.html#a5230b2777ea2fb065a8a717400879dbb">getCurrentSpectrumIndex</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>;</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  }</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a3aa08df4ab42dd84a60e9d3d570b0d24"> 236</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1LayerData.html#a3aa08df4ab42dd84a60e9d3d570b0d24">setCurrentSpectrumIndex</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index)</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  {</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a> = index;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  }</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="comment">// we need this specifically because this->type will *not* distinguish</span></div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="comment">// chromatogram and spectra data since we need to store chromatograms for</span></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="comment">// the 1D case in a layer that looks like PEAK data to all tools.</span></div>
<div class="line"><a name="l00245"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a94a7c3db089d482870983a4287e5bf25"> 245</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1LayerData.html#a94a7c3db089d482870983a4287e5bf25">chromatogram_flag_set</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordflow">return</span> this-><a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()->size() > 0 &&</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  this-><a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()->metaValueExists(<span class="stringliteral">"is_chromatogram"</span>) &&</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  this-><a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()->getMetaValue(<span class="stringliteral">"is_chromatogram"</span>).toBool();</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  }</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="comment">// set the chromatogram flag</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a43f92585590faa785495d78c87c98a68"> 253</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1LayerData.html#a43f92585590faa785495d78c87c98a68">set_chromatogram_flag</a>()</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  {</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  this-><a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()->setMetaValue(<span class="stringliteral">"is_chromatogram"</span>, <span class="stringliteral">"true"</span>);</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  }</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span> </div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="comment">// remove the chromatogram flag</span></div>
<div class="line"><a name="l00259"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a035f9e50aaf2c35bdbe956206286b289"> 259</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1LayerData.html#a035f9e50aaf2c35bdbe956206286b289">remove_chromatogram_flag</a>()</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  {</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="keywordflow">if</span> (this-><a class="code" href="classOpenMS_1_1LayerData.html#a94a7c3db089d482870983a4287e5bf25">chromatogram_flag_set</a>())</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  {</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  this-><a class="code" href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">getPeakData</a>()->removeMetaValue(<span class="stringliteral">"is_chromatogram"</span>);</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  }</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  }</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span> </div>
<div class="line"><a name="l00268"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#aa54a57ae048476d840caf6d4d2c47aa3"> 268</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1LayerData.html#aa54a57ae048476d840caf6d4d2c47aa3">visible</a>;</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00271"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#afad0f359fd4d0fafd6cc51d58dc53ba6"> 271</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1LayerData.html#afad0f359fd4d0fafd6cc51d58dc53ba6">flipped</a>;</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a name="l00274"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ac52af21f72e9a83ef5e2e7076bae30e4"> 274</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6">DataType</a> <a class="code" href="classOpenMS_1_1LayerData.html#ac52af21f72e9a83ef5e2e7076bae30e4">type</a>;</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span> </div>
<div class="line"><a name="l00277"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a9a2326f35466e54c36c070829245c557"> 277</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1LayerData.html#a9a2326f35466e54c36c070829245c557">name</a>;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span> </div>
<div class="line"><a name="l00280"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ae59f2daabb9fbadf96ab4fceb44d6f77"> 280</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1LayerData.html#ae59f2daabb9fbadf96ab4fceb44d6f77">filename</a>;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span> </div>
<div class="line"><a name="l00283"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a445a60c263ff4a041acf8d094274b52b"> 283</a></span>  std::vector<PeptideIdentification> <a class="code" href="classOpenMS_1_1LayerData.html#a445a60c263ff4a041acf8d094274b52b">peptides</a>;</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad754716e5ea05dfffa1e048774643960"> 286</a></span>  <a class="code" href="classOpenMS_1_1Param.html">Param</a> <a class="code" href="classOpenMS_1_1LayerData.html#ad754716e5ea05dfffa1e048774643960">param</a>;</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span> </div>
<div class="line"><a name="l00289"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad5629f5ee1855a5859c05d052207f5f3"> 289</a></span>  <a class="code" href="classOpenMS_1_1MultiGradient.html">MultiGradient</a> <a class="code" href="classOpenMS_1_1LayerData.html#ad5629f5ee1855a5859c05d052207f5f3">gradient</a>;</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> </div>
<div class="line"><a name="l00292"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a62e4fa80ed1cbf7e01e3b8d95acb89e3"> 292</a></span>  <a class="code" href="classOpenMS_1_1DataFilters.html">DataFilters</a> <a class="code" href="classOpenMS_1_1LayerData.html#a62e4fa80ed1cbf7e01e3b8d95acb89e3">filters</a>;</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span> </div>
<div class="line"><a name="l00295"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9"> 295</a></span>  std::vector<Annotations1DContainer> <a class="code" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">annotations_1d</a>;</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span> </div>
<div class="line"><a name="l00298"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a883ae210392142bdc0c07032eb0fc0d4"> 298</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1LayerData.html#a883ae210392142bdc0c07032eb0fc0d4">modifiable</a>;</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> </div>
<div class="line"><a name="l00301"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a48b46e9dd96a6a268ee4e28d52a3ed87"> 301</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1LayerData.html#a48b46e9dd96a6a268ee4e28d52a3ed87">modified</a>;</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00304"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#abfe1e0a71c43307a45599b4769e1a956"> 304</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9">LabelType</a> <a class="code" href="classOpenMS_1_1LayerData.html#abfe1e0a71c43307a45599b4769e1a956">label</a>;</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span> </div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00308"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b"> 308</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">FeatureMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b">features</a>;</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span> </div>
<div class="line"><a name="l00311"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897"> 311</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">ConsensusMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897">consensus</a>;</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span> </div>
<div class="line"><a name="l00314"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8"> 314</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> <a class="code" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">peaks</a>;</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span> </div>
<div class="line"><a name="l00317"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#acc0e1ed05520a0c334cc5bb3c567e5f2"> 317</a></span>  <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">ExperimentSharedPtrType</a> <a class="code" href="classOpenMS_1_1LayerData.html#acc0e1ed05520a0c334cc5bb3c567e5f2">chromatograms</a>;</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span> </div>
<div class="line"><a name="l00320"></a><span class="lineno"><a class="line" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e"> 320</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">current_spectrum_</a>;</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  };</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> </div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  OPENMS_GUI_DLLAPI std::ostream & <a class="code" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator<<</a>(std::ostream & os, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html">LayerData</a> & rhs);</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span> </div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> } <span class="comment">//namespace</span></div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> </div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> <span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295f"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295f">OpenMS::LayerData::Flags</a></div><div class="ttdeci">Flags</div><div class="ttdoc">Flags that determine which information is shown. </div><div class="ttdef"><b>Definition:</b> LayerData.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295faf29341d5e87edafe32ac4bd05f7ac8f4"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295faf29341d5e87edafe32ac4bd05f7ac8f4">OpenMS::LayerData::C_ELEMENTS</a></div><div class="ttdoc">Consensus features: Show elements. </div><div class="ttdef"><b>Definition:</b> LayerData.h:82</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aac52216e255c32f872659e2a9a74bd75"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aac52216e255c32f872659e2a9a74bd75">OpenMS::LayerData::NamesOfLabelType</a></div><div class="ttdeci">static const std::string NamesOfLabelType[SIZE_OF_LABEL_TYPE]</div><div class="ttdoc">Label names. </div><div class="ttdef"><b>Definition:</b> LayerData.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fafc4e9942b014e3c67746b14e0fb29ef7"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fafc4e9942b014e3c67746b14e0fb29ef7">OpenMS::LayerData::F_HULLS</a></div><div class="ttdoc">Features: Convex hulls of single mass traces. </div><div class="ttdef"><b>Definition:</b> LayerData.h:78</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a066042ae14211da37d4fa66d466bfa3e"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">OpenMS::MSExperiment::SpectrumType</a></div><div class="ttdeci">MSSpectrum< PeakType > SpectrumType</div><div class="ttdoc">Spectrum Type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a849095d07b9cfcffc5aaaa3590ceab9b"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a849095d07b9cfcffc5aaaa3590ceab9b">OpenMS::LayerData::features</a></div><div class="ttdeci">FeatureMapSharedPtrType features</div><div class="ttdoc">feature data </div><div class="ttdef"><b>Definition:</b> LayerData.h:308</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a0aa1e478399d7f5a33256e38c854a0ee"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a0aa1e478399d7f5a33256e38c854a0ee">OpenMS::LayerData::getCurrentAnnotations</a></div><div class="ttdeci">const Annotations1DContainer & getCurrentAnnotations() const </div><div class="ttdoc">Returns a const reference to the annotations of the current spectrum (1d view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:200</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a885d0dcef524a89b4381bb0fa0e4bd9d"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a885d0dcef524a89b4381bb0fa0e4bd9d">OpenMS::LayerData::flags</a></div><div class="ttdeci">std::bitset< SIZE_OF_FLAGS > flags</div><div class="ttdoc">Actual state of each flag. </div><div class="ttdef"><b>Definition:</b> LayerData.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fa5116e99c737a6e7013719cb478693014"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa5116e99c737a6e7013719cb478693014">OpenMS::LayerData::F_HULL</a></div><div class="ttdoc">Features: Overall convex hull. </div><div class="ttdef"><b>Definition:</b> LayerData.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fa7140842a4caf6cdcf85bdb8cbf9f5273"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa7140842a4caf6cdcf85bdb8cbf9f5273">OpenMS::LayerData::SIZE_OF_FLAGS</a></div><div class="ttdef"><b>Definition:</b> LayerData.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_abfe1e0a71c43307a45599b4769e1a956"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#abfe1e0a71c43307a45599b4769e1a956">OpenMS::LayerData::label</a></div><div class="ttdeci">LabelType label</div><div class="ttdoc">Label type. </div><div class="ttdef"><b>Definition:</b> LayerData.h:304</div></div>
<div class="ttc" id="ConsensusMap_8h_html"><div class="ttname"><a href="ConsensusMap_8h.html">ConsensusMap.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a3adc9711df923c3e4ef9fb609963e0f1"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a3adc9711df923c3e4ef9fb609963e0f1">OpenMS::LayerData::getConsensusMap</a></div><div class="ttdeci">const ConsensusMapSharedPtrType & getConsensusMap() const </div><div class="ttdoc">Returns a const reference to the consensus feature data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a95d449298325e0072bfa7bc92048f4d9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a95d449298325e0072bfa7bc92048f4d9">OpenMS::LayerData::getFeatureMap</a></div><div class="ttdeci">const FeatureMapSharedPtrType & getFeatureMap() const </div><div class="ttdoc">Returns a const reference to the current feature data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6">OpenMS::LayerData::DataType</a></div><div class="ttdeci">DataType</div><div class="ttdoc">Dataset types. </div><div class="ttdef"><b>Definition:</b> LayerData.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a48b46e9dd96a6a268ee4e28d52a3ed87"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a48b46e9dd96a6a268ee4e28d52a3ed87">OpenMS::LayerData::modified</a></div><div class="ttdeci">bool modified</div><div class="ttdoc">Flag that indicates that the layer data was modified since loading it. </div><div class="ttdef"><b>Definition:</b> LayerData.h:301</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap<></a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a8545ca05ab5c44aa4c341230b76438bd"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a8545ca05ab5c44aa4c341230b76438bd">OpenMS::LayerData::getFeatureMap</a></div><div class="ttdeci">FeatureMapSharedPtrType & getFeatureMap()</div><div class="ttdoc">Returns a const reference to the current feature data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a035f9e50aaf2c35bdbe956206286b289"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a035f9e50aaf2c35bdbe956206286b289">OpenMS::LayerData::remove_chromatogram_flag</a></div><div class="ttdeci">void remove_chromatogram_flag()</div><div class="ttdef"><b>Definition:</b> LayerData.h:259</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a048269b86476545d0f93c3098cdf69b7"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a048269b86476545d0f93c3098cdf69b7">OpenMS::LayerData::getCurrentSpectrum</a></div><div class="ttdeci">ExperimentType::SpectrumType & getCurrentSpectrum()</div><div class="ttdoc">Returns a mutable reference to the current spectrum (1d view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:224</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a70477e67dc0f0614f20edb48028926f6"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a70477e67dc0f0614f20edb48028926f6">OpenMS::LayerData::ExperimentType</a></div><div class="ttdeci">MSExperiment ExperimentType</div><div class="ttdoc">Main data type (experiment) </div><div class="ttdef"><b>Definition:</b> LayerData.h:117</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9a0829a2b458a9f4a3a3af1a41ae348940"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a0829a2b458a9f4a3a3af1a41ae348940">OpenMS::LayerData::L_ID_ALL</a></div><div class="ttdoc">All peptide hits of the first identification run are used. </div><div class="ttdef"><b>Definition:</b> LayerData.h:97</div></div>
<div class="ttc" id="Annotations1DContainer_8h_html"><div class="ttname"><a href="Annotations1DContainer_8h.html">Annotations1DContainer.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a5230b2777ea2fb065a8a717400879dbb"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a5230b2777ea2fb065a8a717400879dbb">OpenMS::LayerData::getCurrentSpectrumIndex</a></div><div class="ttdeci">Size getCurrentSpectrumIndex() const </div><div class="ttdoc">Get the index of the current spectrum. </div><div class="ttdef"><b>Definition:</b> LayerData.h:230</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74df8b74439d1f76961c8d987fb074fd"><div class="ttname"><a href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">OpenMS::operator<<</a></div><div class="ttdeci">std::ostream & operator<<(std::ostream &os, const ItraqQuantifier::ItraqQuantifierStats &stats)</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6aeed6ea354e53d7846af370fa5ac314f9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6aeed6ea354e53d7846af370fa5ac314f9">OpenMS::LayerData::DT_UNKNOWN</a></div><div class="ttdoc">Undefined data type indicating an error. </div><div class="ttdef"><b>Definition:</b> LayerData.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6ae84aa6fad37956946c285f52c37bb304"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6ae84aa6fad37956946c285f52c37bb304">OpenMS::LayerData::DT_IDENT</a></div><div class="ttdoc">Peptide identification data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:70</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ac6ceb9b8201493caf67784adab29692c"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ac6ceb9b8201493caf67784adab29692c">OpenMS::LayerData::getCurrentAnnotations</a></div><div class="ttdeci">Annotations1DContainer & getCurrentAnnotations()</div><div class="ttdoc">Returns a mutable reference to the annotations of the current spectrum (1d view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:206</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a040fdfd93b8da7d83618c0c76fc1d88e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">OpenMS::LayerData::ExperimentSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ExperimentType > ExperimentSharedPtrType</div><div class="ttdoc">SharedPtr on MSExperiment. </div><div class="ttdef"><b>Definition:</b> LayerData.h:120</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6a55d2b1110fbdef885498d2dcb2711790"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a55d2b1110fbdef885498d2dcb2711790">OpenMS::LayerData::DT_CHROMATOGRAM</a></div><div class="ttdoc">Chromatogram data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a447a67f27af372b2cb68cc0cf64186e9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">OpenMS::LayerData::annotations_1d</a></div><div class="ttdeci">std::vector< Annotations1DContainer > annotations_1d</div><div class="ttdoc">Annotations of all spectra of the experiment (1D view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:295</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_acbae86675ec05e462a23f8ff560b2047"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#acbae86675ec05e462a23f8ff560b2047">OpenMS::LayerData::getPeakData</a></div><div class="ttdeci">ExperimentSharedPtrType & getPeakData()</div><div class="ttdoc">Returns a mutable reference to the current peak data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9aa0ebdc7e207d8f3e9ccda2e862ec399b"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aa0ebdc7e207d8f3e9ccda2e862ec399b">OpenMS::LayerData::L_META_LABEL</a></div><div class="ttdoc">The &#39;label&#39; meta information is used. </div><div class="ttdef"><b>Definition:</b> LayerData.h:95</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a9a2326f35466e54c36c070829245c557"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a9a2326f35466e54c36c070829245c557">OpenMS::LayerData::name</a></div><div class="ttdeci">String name</div><div class="ttdoc">layer name </div><div class="ttdef"><b>Definition:</b> LayerData.h:277</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_afad0f359fd4d0fafd6cc51d58dc53ba6"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#afad0f359fd4d0fafd6cc51d58dc53ba6">OpenMS::LayerData::flipped</a></div><div class="ttdeci">bool flipped</div><div class="ttdoc">if this layer is flipped (1d mirror view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:271</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a9cfdabc92ea7b1a1ebb81693c16367c5"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a9cfdabc92ea7b1a1ebb81693c16367c5">OpenMS::LayerData::getChromatogramData</a></div><div class="ttdeci">ExperimentSharedPtrType & getChromatogramData()</div><div class="ttdoc">Returns a mutable reference to the current chromatogram data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:194</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_acc0e1ed05520a0c334cc5bb3c567e5f2"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#acc0e1ed05520a0c334cc5bb3c567e5f2">OpenMS::LayerData::chromatograms</a></div><div class="ttdeci">ExperimentSharedPtrType chromatograms</div><div class="ttdoc">chromatogram data </div><div class="ttdef"><b>Definition:</b> LayerData.h:317</div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad754716e5ea05dfffa1e048774643960"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad754716e5ea05dfffa1e048774643960">OpenMS::LayerData::param</a></div><div class="ttdeci">Param param</div><div class="ttdoc">Layer parameters. </div><div class="ttdef"><b>Definition:</b> LayerData.h:286</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum< PeakType ></a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_abc09e7582792e5671258aaf6f04c492d"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#abc09e7582792e5671258aaf6f04c492d">OpenMS::LayerData::getPeakData</a></div><div class="ttdeci">const ExperimentSharedPtrType & getPeakData() const </div><div class="ttdoc">Returns a const reference to the current peak data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:176</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6a375bb226d9aad6fbe6022960f2a8f008"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a375bb226d9aad6fbe6022960f2a8f008">OpenMS::LayerData::DT_FEATURE</a></div><div class="ttdoc">Feature data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_afbbfc0d6076c30ad2d3957327e449d50"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#afbbfc0d6076c30ad2d3957327e449d50">OpenMS::LayerData::getAnnotations</a></div><div class="ttdeci">Annotations1DContainer & getAnnotations(Size spectrum_index)</div><div class="ttdoc">Returns a mutable reference to the annotations of the current spectrum (1d view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:218</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a92a35eff69acaaa04fef5bba6bae9fc1"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">OpenMS::LayerData::ConsensusMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ConsensusMap > ConsensusMapSharedPtrType</div><div class="ttdoc">SharedPtr on consensus features. </div><div class="ttdef"><b>Definition:</b> LayerData.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6a51dba0010db221991bce68b24892969c"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51dba0010db221991bce68b24892969c">OpenMS::LayerData::DT_CONSENSUS</a></div><div class="ttdoc">Consensus feature data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_acb4ebe1e597285706bc118bda303958f"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#acb4ebe1e597285706bc118bda303958f">OpenMS::LayerData::getConsensusMap</a></div><div class="ttdeci">ConsensusMapSharedPtrType & getConsensusMap()</div><div class="ttdoc">Returns current consensus map (mutable) </div><div class="ttdef"><b>Definition:</b> LayerData.h:170</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ae59f2daabb9fbadf96ab4fceb44d6f77"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ae59f2daabb9fbadf96ab4fceb44d6f77">OpenMS::LayerData::filename</a></div><div class="ttdeci">String filename</div><div class="ttdoc">file name of the file the data comes from (if available) </div><div class="ttdef"><b>Definition:</b> LayerData.h:280</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a7173f32dd9be22aa12bf7ee1ffa3d6ef"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a7173f32dd9be22aa12bf7ee1ffa3d6ef">OpenMS::LayerData::getChromatogramData</a></div><div class="ttdeci">const ExperimentSharedPtrType & getChromatogramData() const </div><div class="ttdoc">Returns a const reference to the current chromatogram data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:188</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_afe6623897f9f2ba65bf7958860cdb04e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#afe6623897f9f2ba65bf7958860cdb04e">OpenMS::LayerData::current_spectrum_</a></div><div class="ttdeci">Size current_spectrum_</div><div class="ttdoc">Index of the current spectrum. </div><div class="ttdef"><b>Definition:</b> LayerData.h:320</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a43f92585590faa785495d78c87c98a68"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a43f92585590faa785495d78c87c98a68">OpenMS::LayerData::set_chromatogram_flag</a></div><div class="ttdeci">void set_chromatogram_flag()</div><div class="ttdef"><b>Definition:</b> LayerData.h:253</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad37b5929f383962c7085ffd21bd37ad8"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">OpenMS::LayerData::peaks</a></div><div class="ttdeci">ExperimentSharedPtrType peaks</div><div class="ttdoc">peak data </div><div class="ttdef"><b>Definition:</b> LayerData.h:314</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_af7f622f316bc14466000ee9230fba7b2"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">OpenMS::LayerData::FeatureMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< FeatureMap<> > FeatureMapSharedPtrType</div><div class="ttdoc">SharedPtr on feature map. </div><div class="ttdef"><b>Definition:</b> LayerData.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a5a94adc6acc9610a0a97444d0abc5ee5"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a5a94adc6acc9610a0a97444d0abc5ee5">OpenMS::LayerData::ConsensusMapType</a></div><div class="ttdeci">ConsensusMap ConsensusMapType</div><div class="ttdoc">consensus features </div><div class="ttdef"><b>Definition:</b> LayerData.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a6d100793fd59ee65094162a2c7ff6db9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a6d100793fd59ee65094162a2c7ff6db9">OpenMS::LayerData::getAnnotations</a></div><div class="ttdeci">const Annotations1DContainer & getAnnotations(Size spectrum_index) const </div><div class="ttdoc">Returns a const reference to the annotations of the current spectrum (1d view) </div><div class="ttdef"><b>Definition:</b> LayerData.h:212</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a94a7c3db089d482870983a4287e5bf25"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a94a7c3db089d482870983a4287e5bf25">OpenMS::LayerData::chromatogram_flag_set</a></div><div class="ttdeci">bool chromatogram_flag_set() const </div><div class="ttdoc">Check whether the current layer is a chromatogram. </div><div class="ttdef"><b>Definition:</b> LayerData.h:245</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fae6b764e8463265f1bb084e0ff3666224"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fae6b764e8463265f1bb084e0ff3666224">OpenMS::LayerData::P_PROJECTIONS</a></div><div class="ttdoc">Peaks: Show projections. </div><div class="ttdef"><b>Definition:</b> LayerData.h:81</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a883ae210392142bdc0c07032eb0fc0d4"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a883ae210392142bdc0c07032eb0fc0d4">OpenMS::LayerData::modifiable</a></div><div class="ttdeci">bool modifiable</div><div class="ttdoc">Flag that indicates if the layer data can be modified (so far used for features only) ...</div><div class="ttdef"><b>Definition:</b> LayerData.h:298</div></div>
<div class="ttc" id="DataFilters_8h_html"><div class="ttname"><a href="DataFilters_8h.html">DataFilters.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fabde05ad32ec801963a96777027526030"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fabde05ad32ec801963a96777027526030">OpenMS::LayerData::P_PRECURSORS</a></div><div class="ttdoc">Peaks: Mark precursor peaks of MS/MS scans. </div><div class="ttdef"><b>Definition:</b> LayerData.h:80</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a3aa08df4ab42dd84a60e9d3d570b0d24"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a3aa08df4ab42dd84a60e9d3d570b0d24">OpenMS::LayerData::setCurrentSpectrumIndex</a></div><div class="ttdeci">void setCurrentSpectrumIndex(Size index)</div><div class="ttdoc">Set the index of the current spectrum. </div><div class="ttdef"><b>Definition:</b> LayerData.h:236</div></div>
<div class="ttc" id="MultiGradient_8h_html"><div class="ttname"><a href="MultiGradient_8h.html">MultiGradient.h</a></div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a445a60c263ff4a041acf8d094274b52b"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a445a60c263ff4a041acf8d094274b52b">OpenMS::LayerData::peptides</a></div><div class="ttdeci">std::vector< PeptideIdentification > peptides</div><div class="ttdoc">peptide identifications </div><div class="ttdef"><b>Definition:</b> LayerData.h:283</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a62e4fa80ed1cbf7e01e3b8d95acb89e3"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a62e4fa80ed1cbf7e01e3b8d95acb89e3">OpenMS::LayerData::filters</a></div><div class="ttdeci">DataFilters filters</div><div class="ttdoc">Filters to apply before painting. </div><div class="ttdef"><b>Definition:</b> LayerData.h:292</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ab2417aa308a3c93111240aa99c19f41e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ab2417aa308a3c93111240aa99c19f41e">OpenMS::LayerData::LayerData</a></div><div class="ttdeci">LayerData()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> LayerData.h:125</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ac52af21f72e9a83ef5e2e7076bae30e4"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ac52af21f72e9a83ef5e2e7076bae30e4">OpenMS::LayerData::type</a></div><div class="ttdeci">DataType type</div><div class="ttdoc">data type (peak or feature data) </div><div class="ttdef"><b>Definition:</b> LayerData.h:274</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9">OpenMS::LayerData::LabelType</a></div><div class="ttdeci">LabelType</div><div class="ttdoc">Label used in visualization. </div><div class="ttdef"><b>Definition:</b> LayerData.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9a2bc9351bb816ab1387441339dc6ab595"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a2bc9351bb816ab1387441339dc6ab595">OpenMS::LayerData::L_ID</a></div><div class="ttdoc">The best peptide hit of the first identification run is used. </div><div class="ttdef"><b>Definition:</b> LayerData.h:96</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6a51a4e25c4601807c1f347f02c6538834"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6a51a4e25c4601807c1f347f02c6538834">OpenMS::LayerData::DT_PEAK</a></div><div class="ttdoc">Spectrum profile or centroided data. </div><div class="ttdef"><b>Definition:</b> LayerData.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_abcc5be607a462345e4f7bfe7c66849bc"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#abcc5be607a462345e4f7bfe7c66849bc">OpenMS::LayerData::getCurrentSpectrum</a></div><div class="ttdeci">const ExperimentType::SpectrumType & getCurrentSpectrum() const </div><div class="ttdoc">Returns a const reference to the current spectrum (1d view) </div></div>
<div class="ttc" id="classOpenMS_1_1DataFilters_html"><div class="ttname"><a href="classOpenMS_1_1DataFilters.html">OpenMS::DataFilters</a></div><div class="ttdoc">DataFilter array providing some convenience functions. </div><div class="ttdef"><b>Definition:</b> DataFilters.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1MultiGradient_html"><div class="ttname"><a href="classOpenMS_1_1MultiGradient.html">OpenMS::MultiGradient</a></div><div class="ttdoc">A gradient of multiple colors and arbitrary distances between colors. </div><div class="ttdef"><b>Definition:</b> MultiGradient.h:65</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9aea4c115963f513bb9823ebd1ebd2bea9"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9aea4c115963f513bb9823ebd1ebd2bea9">OpenMS::LayerData::L_INDEX</a></div><div class="ttdoc">The element number is used. </div><div class="ttdef"><b>Definition:</b> LayerData.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad5629f5ee1855a5859c05d052207f5f3"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad5629f5ee1855a5859c05d052207f5f3">OpenMS::LayerData::gradient</a></div><div class="ttdeci">MultiGradient gradient</div><div class="ttdoc">Gradient for 2D and 3D views. </div><div class="ttdef"><b>Definition:</b> LayerData.h:289</div></div>
<div class="ttc" id="classOpenMS_1_1Annotations1DContainer_html"><div class="ttname"><a href="classOpenMS_1_1Annotations1DContainer.html">OpenMS::Annotations1DContainer</a></div><div class="ttdoc">Container for annotations to content of Spectrum1DCanvas. </div><div class="ttdef"><b>Definition:</b> Annotations1DContainer.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9a30691a3182bd03aa6414fb8e00e123f8"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9a30691a3182bd03aa6414fb8e00e123f8">OpenMS::LayerData::L_NONE</a></div><div class="ttdoc">No label is displayed. </div><div class="ttdef"><b>Definition:</b> LayerData.h:93</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a66a8c8e5a012a7f7a364be54be2a9897"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a66a8c8e5a012a7f7a364be54be2a9897">OpenMS::LayerData::consensus</a></div><div class="ttdeci">ConsensusMapSharedPtrType consensus</div><div class="ttdoc">consensus feature data </div><div class="ttdef"><b>Definition:</b> LayerData.h:311</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="FeatureMap_8h_html"><div class="ttname"><a href="FeatureMap_8h.html">FeatureMap.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fa889ea25a29b969d4408fd46d8b659c1e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa889ea25a29b969d4408fd46d8b659c1e">OpenMS::LayerData::F_UNASSIGNED</a></div><div class="ttdoc">Features: Unassigned peptide hits. </div><div class="ttdef"><b>Definition:</b> LayerData.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa54a57ae048476d840caf6d4d2c47aa3"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa54a57ae048476d840caf6d4d2c47aa3">OpenMS::LayerData::visible</a></div><div class="ttdeci">bool visible</div><div class="ttdoc">if this layer is visible </div><div class="ttdef"><b>Definition:</b> LayerData.h:268</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a2e33fafe7cfaf59b814f1fca20bdd0b9adaa0b5d69d0f5c795842d6d9118c0369"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a2e33fafe7cfaf59b814f1fca20bdd0b9adaa0b5d69d0f5c795842d6d9118c0369">OpenMS::LayerData::SIZE_OF_LABEL_TYPE</a></div><div class="ttdef"><b>Definition:</b> LayerData.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html"><div class="ttname"><a href="classOpenMS_1_1LayerData.html">OpenMS::LayerData</a></div><div class="ttdoc">Class that stores the data for one layer. </div><div class="ttdef"><b>Definition:</b> LayerData.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_aa705cf7e79a21c2352b00ffe20cd295fa107ebbc4aa8991cf4679e8fbdabee100"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fa107ebbc4aa8991cf4679e8fbdabee100">OpenMS::LayerData::I_PEPTIDEMZ</a></div><div class="ttdoc">Identifications: m/z source. </div><div class="ttdef"><b>Definition:</b> LayerData.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_add205a5ccc5c6579b1a3051b7cf8707c"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#add205a5ccc5c6579b1a3051b7cf8707c">OpenMS::LayerData::FeatureMapType</a></div><div class="ttdeci">FeatureMap FeatureMapType</div><div class="ttdoc">Features. </div><div class="ttdef"><b>Definition:</b> LayerData.h:105</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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