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<div class="textblock"><code>#include <<a class="el" href="String_8h_source.html">OpenMS/DATASTRUCTURES/String.h</a>></code><br/>
<code>#include <sstream></code><br/>
<code>#include <iostream></code><br/>
<code>#include <list></code><br/>
<code>#include <vector></code><br/>
<code>#include <ctime></code><br/>
<code>#include <map></code><br/>
</div>
<p><a href="LogStream_8h_source.html">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html">LogStreamBuf</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Stream buffer used by <a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html" title="Log Stream Class. ">LogStream</a>. <a href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1StreamStruct.html">LogStreamBuf::StreamStruct</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Holds a stream that is connected to the <a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html" title="Log Stream Class. ">LogStream</a>. It also includes the minimum and maximum level at which the <a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html" title="Log Stream Class. ">LogStream</a> redirects messages to this stream. <a href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1StreamStruct.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1LogCacheStruct.html">LogStreamBuf::LogCacheStruct</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Holds a counter of occurences and an index for the occurence sequence of the corresponding log message. <a href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1LogCacheStruct.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Logger_1_1LogStreamNotifier.html">LogStreamNotifier</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">LogStream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Log Stream Class. <a href="classOpenMS_1_1Logger_1_1LogStream.html#details">More...</a><br/></td></tr>
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Namespaces</h2></td></tr>
<tr class="memitem:namespaceOpenMS"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html">OpenMS</a></td></tr>
<tr class="memdesc:namespaceOpenMS"><td class="mdescLeft"> </td><td class="mdescRight">Main OpenMS namespace. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Logger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Logger.html">OpenMS::Logger</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Logger"><td class="mdescLeft"> </td><td class="mdescRight">Log streams. <br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="define-members"></a>
Macros</h2></td></tr>
<tr class="memitem:a7eef78323c8dc5bc0f6ca6416d89b828"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="LogStream_8h.html#a7eef78323c8dc5bc0f6ca6416d89b828">LOG_FATAL_ERROR</a>   Log_fatal << __FILE__ << "(" << __LINE__ << "): "</td></tr>
<tr class="memdesc:a7eef78323c8dc5bc0f6ca6416d89b828"><td class="mdescLeft"> </td><td class="mdescRight">Macro to be used if fatal error are reported (processing stops) <a href="#a7eef78323c8dc5bc0f6ca6416d89b828">More...</a><br/></td></tr>
<tr class="separator:a7eef78323c8dc5bc0f6ca6416d89b828"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aced66975c154ea0e2a8ec3bc818b4e08"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="LogStream_8h.html#aced66975c154ea0e2a8ec3bc818b4e08">LOG_ERROR</a>   Log_error</td></tr>
<tr class="memdesc:aced66975c154ea0e2a8ec3bc818b4e08"><td class="mdescLeft"> </td><td class="mdescRight">Macro to be used if non-fatal error are reported (processing continues) <a href="#aced66975c154ea0e2a8ec3bc818b4e08">More...</a><br/></td></tr>
<tr class="separator:aced66975c154ea0e2a8ec3bc818b4e08"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aea3f57d6dcc5b4ac957e2679e87dde27"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="LogStream_8h.html#aea3f57d6dcc5b4ac957e2679e87dde27">LOG_WARN</a>   Log_warn</td></tr>
<tr class="memdesc:aea3f57d6dcc5b4ac957e2679e87dde27"><td class="mdescLeft"> </td><td class="mdescRight">Macro if a warning, a piece of information which should be read by the user, should be logged. <a href="#aea3f57d6dcc5b4ac957e2679e87dde27">More...</a><br/></td></tr>
<tr class="separator:aea3f57d6dcc5b4ac957e2679e87dde27"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aeb4f36db01bd128c7afeac5889dac311"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="LogStream_8h.html#aeb4f36db01bd128c7afeac5889dac311">LOG_INFO</a>   Log_info</td></tr>
<tr class="memdesc:aeb4f36db01bd128c7afeac5889dac311"><td class="mdescLeft"> </td><td class="mdescRight">Macro if a information, e.g. a status should be reported. <a href="#aeb4f36db01bd128c7afeac5889dac311">More...</a><br/></td></tr>
<tr class="separator:aeb4f36db01bd128c7afeac5889dac311"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6ff63e8955665c4a58b1598f2b07c51a"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="LogStream_8h.html#a6ff63e8955665c4a58b1598f2b07c51a">LOG_DEBUG</a>   Log_debug << __FILE__ << "(" << __LINE__ << "): "</td></tr>
<tr class="memdesc:a6ff63e8955665c4a58b1598f2b07c51a"><td class="mdescLeft"> </td><td class="mdescRight">Macro for general debugging information. <a href="#a6ff63e8955665c4a58b1598f2b07c51a">More...</a><br/></td></tr>
<tr class="separator:a6ff63e8955665c4a58b1598f2b07c51a"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
Variables</h2></td></tr>
<tr class="memitem:a5085c82007a86521101d48755e67d911"><td class="memItemLeft" align="right" valign="top">Logger::LogStream </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5085c82007a86521101d48755e67d911">Log_fatal</a></td></tr>
<tr class="memdesc:a5085c82007a86521101d48755e67d911"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as fatal errors. By default it is bound to <b>cerr</b>. <a href="#a5085c82007a86521101d48755e67d911">More...</a><br/></td></tr>
<tr class="separator:a5085c82007a86521101d48755e67d911"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a15dbec2ae5286b1339525e87ba0bb83b"><td class="memItemLeft" align="right" valign="top">Logger::LogStream </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a15dbec2ae5286b1339525e87ba0bb83b">Log_error</a></td></tr>
<tr class="memdesc:a15dbec2ae5286b1339525e87ba0bb83b"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as errors. By default it is bound to <b>cerr</b>. <a href="#a15dbec2ae5286b1339525e87ba0bb83b">More...</a><br/></td></tr>
<tr class="separator:a15dbec2ae5286b1339525e87ba0bb83b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae7a548e7b5e49f9e3fbdfaf20e3f46eb"><td class="memItemLeft" align="right" valign="top">Logger::LogStream </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ae7a548e7b5e49f9e3fbdfaf20e3f46eb">Log_warn</a></td></tr>
<tr class="memdesc:ae7a548e7b5e49f9e3fbdfaf20e3f46eb"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as warnings. By default it is bound to <b>cout</b>. <a href="#ae7a548e7b5e49f9e3fbdfaf20e3f46eb">More...</a><br/></td></tr>
<tr class="separator:ae7a548e7b5e49f9e3fbdfaf20e3f46eb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a033e094afdc56769b551dfd353a7c5f4"><td class="memItemLeft" align="right" valign="top">Logger::LogStream </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a033e094afdc56769b551dfd353a7c5f4">Log_info</a></td></tr>
<tr class="memdesc:a033e094afdc56769b551dfd353a7c5f4"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as information. By default it is bound to <b>cout</b>. <a href="#a033e094afdc56769b551dfd353a7c5f4">More...</a><br/></td></tr>
<tr class="separator:a033e094afdc56769b551dfd353a7c5f4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a37f73135da19f7f69b04910b53b515be"><td class="memItemLeft" align="right" valign="top">Logger::LogStream </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a37f73135da19f7f69b04910b53b515be">Log_debug</a></td></tr>
<tr class="memdesc:a37f73135da19f7f69b04910b53b515be"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as debug output. By default it is not bound to any output stream. <a href="#a37f73135da19f7f69b04910b53b515be">More...</a><br/></td></tr>
<tr class="separator:a37f73135da19f7f69b04910b53b515be"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<h2 class="groupheader">Macro Definition Documentation</h2>
<a class="anchor" id="a6ff63e8955665c4a58b1598f2b07c51a"></a>
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<td class="memname">#define LOG_DEBUG   Log_debug << __FILE__ << "(" << __LINE__ << "): "</td>
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<p>Macro for general debugging information. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad832d6128e519d1c6a7fefd89158c37e">FeatureFinderAlgorithmPicked< PeakType, FeatureType >::chooseTraceFitter_()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a99d30f96dbdc29d5eb5b9060c3b8113e">GaussTraceFitter< PeakType >::fit()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a5a6c5cb5c3bbe8cf2c2b7aa4639667bb">GaussTraceFitter< PeakType >::printState_()</a>, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#a5a6c5cb5c3bbe8cf2c2b7aa4639667bb">EGHTraceFitter< PeakType >::printState_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked< PeakType, FeatureType >::run()</a>, <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#ae432ca06f1c61329d4dff693498b6996">ConfidenceScoring::scoreMap()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">GaussTraceFitter< PeakType >::setInitialParameters_()</a>, and <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">EGHTraceFitter< PeakType >::setInitialParameters_()</a>.</p>
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<td class="memname">#define LOG_ERROR   Log_error</td>
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<p>Macro to be used if non-fatal error are reported (processing continues) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#aa95be3d53de372161a9acfd90a6f7fe1">IDEvaluationBase::loadCurve()</a>, <a class="el" href="INIFileEditor_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#a0aaf41c383f973bf5a11f3a55022eda5">MzMLHandler< MapType >::MzMLHandler()</a>, <a class="el" href="classOpenMS_1_1QApplicationTOPP.html#a0bb2f3cc6237168bf5e1f1864e8cf7ae">QApplicationTOPP::notify()</a>, <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#a842f9ec8bfd7bb9a5acac8212d593cba">INIFileEditorWindow::openFile()</a>, <a class="el" href="structseqan_1_1FoundProteinFunctor.html#a1643cc9313385826b850977c39c9a2fa">FoundProteinFunctor::operator==()</a>, and <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#a484c33c30ea480bd831a92847f61006e">MzMLHandler< MapType >::startElement()</a>.</p>
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<td class="memname">#define LOG_FATAL_ERROR   Log_fatal << __FILE__ << "(" << __LINE__ << "): "</td>
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<p>Macro to be used if fatal error are reported (processing stops) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#af3a6dd04dd533f5b5eead2736eefe91f">IDEvaluationBase::getPoints()</a>.</p>
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<td class="memname">#define LOG_INFO   Log_info</td>
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<p>Macro if a information, e.g. a status should be reported. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1IDMapper.html#ad8c436deda857f332e4d843d002e0717">IDMapper::annotate()</a>, <a class="el" href="classOpenMS_1_1KroenikFile.html#aa4e73ca60efa3ca29e203f46b5187c6c">KroenikFile::load()</a>, <a class="el" href="classOpenMS_1_1SpectraMerger.html#abe04755c7518a6ee530902afccc9c2e6">SpectraMerger::mergeSpectra_()</a>, <a class="el" href="classOpenMS_1_1FeatureMap.html#a6d9d2f709e76acc61c5a869bd4f755c8">FeatureMap< OpenMS::Feature >::operator+=()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked< PeakType, FeatureType >::run()</a>.</p>
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<td class="memname">#define LOG_WARN   Log_warn</td>
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<p>Macro if a warning, a piece of information which should be read by the user, should be logged. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1IDMapper.html#a8422c24016b4c5c9c358395cd307802d">IDMapper::annotate()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a6a6102b4711d0d316cab9a78f492bc64">SignalToNoiseEstimatorMedian< OpenMS::OpenMS::MSSpectrum< PeakT > >::computeSTN_()</a>, <a class="el" href="classOpenMS_1_1ChromatogramTools.html#af3ff28dcfb8f80c33a57605672ebb0b1">ChromatogramTools::convertSpectraToChromatograms()</a>, <a class="el" href="classOpenMS_1_1SpectraMerger.html#a600d56293a3a35b7ef362d788c35eb99">SpectraMerger::mergeSpectraPrecursors()</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a001d4adf21652ff6cdd58efe56e4fb1c">FeatureFinder::run()</a>, <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#ae432ca06f1c61329d4dff693498b6996">ConfidenceScoring::scoreMap()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">TOPPASBase::toppasFileDownloaded_()</a>.</p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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