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<div class="textblock"><code>#include &lt;<a class="el" href="MzMLFile_8h_source.html">OpenMS/FORMAT/MzMLFile.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="FeatureXMLFile_8h_source.html">OpenMS/FORMAT/FeatureXMLFile.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="TransformationXMLFile_8h_source.html">OpenMS/FORMAT/TransformationXMLFile.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="TraMLFile_8h_source.html">OpenMS/FORMAT/TraMLFile.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MRMTransitionGroup_8h_source.html">OpenMS/KERNEL/MRMTransitionGroup.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MRMFeature_8h_source.html">OpenMS/KERNEL/MRMFeature.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MSSpectrum_8h_source.html">OpenMS/KERNEL/MSSpectrum.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MSChromatogram_8h_source.html">OpenMS/KERNEL/MSChromatogram.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="SignalToNoiseEstimatorMedian_8h_source.html">OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MRMTransitionGroupPicker_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="ANALYSIS_2OPENSWATH_2OPENSWATHALGO_2DATAACCESS_2DataStructures_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/DataStructures.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="ANALYSIS_2OPENSWATH_2OPENSWATHALGO_2DATAACCESS_2ISpectrumAccess_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="TransitionExperiment_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="SimpleOpenMSSpectraAccessFactory_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MRMFeatureAccessOpenMS_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="EmgScoring_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="Scoring_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/ALGO/Scoring.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="MRMScoring_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/ALGO/MRMScoring.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="DIAScoring_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="SpectrumAddition_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h</a>&gt;</code><br/>
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<p><a href="MRMFeatureFinderScoring_8h_source.html">Go to the source code of this file.</a></p>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OpenSwath__Scores.html">OpenSwath_Scores</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A structure to hold the different scores computed by the <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>.  <a href="structOpenMS_1_1OpenSwath__Scores.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html">MRMFeatureFinderScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">The MRMFeatureFinder finds and scores peaks of transitions that coelute.  <a href="classOpenMS_1_1MRMFeatureFinderScoring.html#details">More...</a><br/></td></tr>
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<tr class="memitem:a1f18f099a1e85e5ad0256530ab97cd3a"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="MRMFeatureFinderScoring_8h.html#a1f18f099a1e85e5ad0256530ab97cd3a">run_identifier</a>&#160;&#160;&#160;&quot;unique_run_identifier&quot;</td></tr>
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<tr class="memitem:a11009be58e0d38179204ebd339593f8b"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="MRMFeatureFinderScoring_8h.html#a11009be58e0d38179204ebd339593f8b">USE_SP_INTERFACE</a></td></tr>
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<tr class="memitem:ac179205eda67e461049ab7112f3de1e9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="MRMFeatureFinderScoring_8h.html#ac179205eda67e461049ab7112f3de1e9">SortDoubleDoublePairFirst</a> (const std::pair&lt; <a class="el" href="classdouble.html">double</a>, <a class="el" href="classdouble.html">double</a> &gt; &amp;left, const std::pair&lt; <a class="el" href="classdouble.html">double</a>, <a class="el" href="classdouble.html">double</a> &gt; &amp;right)</td></tr>
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          <td class="memname">#define run_identifier&#160;&#160;&#160;&quot;unique_run_identifier&quot;</td>
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<p>Referenced by <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a21e38df433d05118f343c33af60816e9">MRMFeatureFinderScoring::pickExperiment()</a>, and <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a1d7f11c2be93f8140f508487ba0ae718">MRMFeatureFinderScoring::scorePeakgroups_()</a>.</p>

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          <td class="memname">#define USE_SP_INTERFACE</td>
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          <td class="memname">bool SortDoubleDoublePairFirst </td>
          <td>(</td>
          <td class="paramtype">const std::pair&lt; <a class="el" href="classdouble.html">double</a>, <a class="el" href="classdouble.html">double</a> &gt; &amp;&#160;</td>
          <td class="paramname"><em>left</em>, </td>
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          <td class="paramtype">const std::pair&lt; <a class="el" href="classdouble.html">double</a>, <a class="el" href="classdouble.html">double</a> &gt; &amp;&#160;</td>
          <td class="paramname"><em>right</em>&#160;</td>
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          <td>)</td>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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