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<a href="MRMTransitionGroup_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Hannes Roest $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Hannes Roest $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_KERNEL_MRMTRANSITIONGROUP_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_MRMTRANSITIONGROUP_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MRMFeature_8h.html">OpenMS/KERNEL/MRMFeature.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;boost/numeric/conversion/cast.hpp&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;{</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">typename</span> SpectrumType, <span class="keyword">typename</span> TransitionType&gt;</div>
<div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html">   56</a></span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1MRMTransitionGroup.html">MRMTransitionGroup</a></div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;  {</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;    <span class="keyword">typedef</span> std::vector&lt;MRMFeature&gt; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a2ef73bcc7369977fefdb6cafb2b7599b">MRMFeatureListType</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a8ac2ed3f94ba65e5b4f17e891dd4738a">   66</a></span>&#160;    <span class="keyword">typedef</span> std::vector&lt;TransitionType&gt; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a8ac2ed3f94ba65e5b4f17e891dd4738a">TransitionsType</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a1f34797797ee172c37d26e9154cb37be">   68</a></span>&#160;    <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">SpectrumType::PeakType</a> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a1f34797797ee172c37d26e9154cb37be">PeakType</a>;</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;</div>
<div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a95de78f330b3bf23b9e87148e04de7b8">   72</a></span>&#160;    <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a95de78f330b3bf23b9e87148e04de7b8">MRMTransitionGroup</a>()</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    {</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    }</div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;</div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a31b34f54eeee6eebc5ddc5563fb14108">   77</a></span>&#160;    <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a31b34f54eeee6eebc5ddc5563fb14108">MRMTransitionGroup</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html">MRMTransitionGroup</a> &amp; rhs) :</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a>),</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>),</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>),</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>),</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>),</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>(rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>)</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    {</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    }</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;</div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a1ba3c1530806bf9744ecca05eec89b8a">   88</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a1ba3c1530806bf9744ecca05eec89b8a">~MRMTransitionGroup</a>()</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;    {</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    }</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#ab34186867ca16883370e3745d22a411b">   92</a></span>&#160;    <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html">MRMTransitionGroup</a> &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#ab34186867ca16883370e3745d22a411b">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html">MRMTransitionGroup</a> &amp; rhs)</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    {</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;      <span class="keywordflow">if</span> (&amp;rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;      {</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a>;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a> = rhs.<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;      }</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    }</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;</div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a9d78a687cf2a391198bb3cbc08bc06cb">  107</a></span>&#160;    <span class="keyword">inline</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a9d78a687cf2a391198bb3cbc08bc06cb">size</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>.size();</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    }</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;</div>
<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#aedcd02941cf31e259bb9394850653bbc">  112</a></span>&#160;    <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aedcd02941cf31e259bb9394850653bbc">getTransitionGroupID</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a>;</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    }</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;</div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#ad5e3b3cdeb8821cc6cd95452ce998604">  117</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#ad5e3b3cdeb8821cc6cd95452ce998604">setTransitionGroupID</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; tr_gr_id)</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    {</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a> = tr_gr_id;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    }</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a3599bdfacba1b03fa680b7e183dc80ce">  122</a></span>&#160;    <span class="keyword">inline</span> <span class="keyword">const</span> std::vector&lt;TransitionType&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a3599bdfacba1b03fa680b7e183dc80ce">getTransitions</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>;</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;    }</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;</div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a5a270955de5f4c6dea5ef01b4263702e">  127</a></span>&#160;    <span class="keyword">inline</span> std::vector&lt;TransitionType&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a5a270955de5f4c6dea5ef01b4263702e">getTransitionsMuteable</a>()</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    {</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>;</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    }</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a57e977750ef7b1d7e8e5f8cce2b91f1e">  132</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a57e977750ef7b1d7e8e5f8cce2b91f1e">addTransition</a>(<span class="keyword">const</span> TransitionType &amp; transition, <a class="code" href="classOpenMS_1_1String.html">String</a> key)</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    {</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>.push_back(transition);</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>[key] = boost::numeric_cast&lt;<span class="keywordtype">int</span>&gt;(<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>.size()) - 1;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;    }</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;</div>
<div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a72f3eb6e4f2beacf59fb94d10fffd9ba">  138</a></span>&#160;    <span class="keyword">inline</span> <span class="keyword">const</span> TransitionType &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a72f3eb6e4f2beacf59fb94d10fffd9ba">getTransition</a>(<a class="code" href="classOpenMS_1_1String.html">String</a> key) </div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    {</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>[<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>[key]];</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    }</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;</div>
<div class="line"><a name="l00143"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#ab85ba106e10787525ec68de539045085">  143</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#ab85ba106e10787525ec68de539045085">hasTransition</a>(<a class="code" href="classOpenMS_1_1String.html">String</a> key)</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;    {</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>.find(key) != <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>.end();</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    }</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;</div>
<div class="line"><a name="l00148"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a84fbe2b625d0885f5e93397ed2122202">  148</a></span>&#160;    <span class="keyword">inline</span> <span class="keyword">const</span> std::vector&lt;SpectrumType&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a84fbe2b625d0885f5e93397ed2122202">getChromatograms</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    }</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;</div>
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#ab49c14a84d67d68b055c0aad2a2451a0">  153</a></span>&#160;    <span class="keyword">inline</span> std::vector&lt;SpectrumType&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#ab49c14a84d67d68b055c0aad2a2451a0">getChromatograms</a>()</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    {</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>;</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;    }</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;</div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a6b636a97f3625bc651977bcec2a98919">  158</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a6b636a97f3625bc651977bcec2a98919">addChromatogram</a>(SpectrumType &amp; chromatogram, <a class="code" href="classOpenMS_1_1String.html">String</a> key)</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    {</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>.push_back(chromatogram);</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>[key] = boost::numeric_cast&lt;<span class="keywordtype">int</span>&gt;(<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>.size()) - 1;</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;    }</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;</div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a7ec4f785aaca624d2ed4a0a6ad20f721">  164</a></span>&#160;    <span class="keyword">inline</span> SpectrumType &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a7ec4f785aaca624d2ed4a0a6ad20f721">getChromatogram</a>(<a class="code" href="classOpenMS_1_1String.html">String</a> key)</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    {</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>[<a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>[key]];</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    }</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;</div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a26040296cd269b0e94f4a3ef355709b9">  169</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a26040296cd269b0e94f4a3ef355709b9">hasChromatogram</a>(<a class="code" href="classOpenMS_1_1String.html">String</a> key)</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;    {</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>.find(key) != <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>.end();</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    }</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;</div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a4160aecea8784ca4af90f9261307931b">  174</a></span>&#160;    <span class="keyword">inline</span> <span class="keyword">const</span> std::vector&lt;MRMFeature&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a4160aecea8784ca4af90f9261307931b">getFeatures</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>;</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    }</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;</div>
<div class="line"><a name="l00179"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a5c92d3ef5e22a80e2188a8fd81af3e5a">  179</a></span>&#160;    <span class="keyword">inline</span> std::vector&lt;MRMFeature&gt; &amp; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a5c92d3ef5e22a80e2188a8fd81af3e5a">getFeaturesMuteable</a>()</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    {</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>;</div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;    }</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;</div>
<div class="line"><a name="l00184"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#ad54c2606255628d4fe2af3793b1b3da4">  184</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#ad54c2606255628d4fe2af3793b1b3da4">addFeature</a>(<a class="code" href="classOpenMS_1_1MRMFeature.html">MRMFeature</a> &amp; feature)</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    {</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;      <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>.push_back(feature);</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    }</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;</div>
<div class="line"><a name="l00189"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#aff73c863c0c2c6ff6173deac72567709">  189</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aff73c863c0c2c6ff6173deac72567709">getLibraryIntensity</a>(std::vector&lt;double&gt; &amp; result)<span class="keyword"> const</span></div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;      <span class="keywordflow">for</span> (<span class="keyword">typename</span> TransitionsType::const_iterator it = <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>.begin(); it != <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>.end(); ++it)</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;      {</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        result.push_back(it-&gt;getLibraryIntensity());</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;      }</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i &lt; result.size(); i++)</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;      {</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <span class="comment">// the library intensity should never be below zero</span></div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        <span class="keywordflow">if</span> (result[i] &lt; 0.0) </div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;        {</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;          result[i] = 0.0;</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;        }</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;      }</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;    }</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;</div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;</div>
<div class="line"><a name="l00208"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">  208</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">tr_gr_id_</a>;</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;</div>
<div class="line"><a name="l00211"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">  211</a></span>&#160;    <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a8ac2ed3f94ba65e5b4f17e891dd4738a">TransitionsType</a> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">transitions_</a>;</div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;</div>
<div class="line"><a name="l00214"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">  214</a></span>&#160;    std::vector&lt;SpectrumType&gt; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">chromatograms_</a>;</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;</div>
<div class="line"><a name="l00217"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">  217</a></span>&#160;    <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a2ef73bcc7369977fefdb6cafb2b7599b">MRMFeatureListType</a> <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">cons_features_</a>;</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;</div>
<div class="line"><a name="l00219"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">  219</a></span>&#160;    std::map&lt;String, int&gt; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">chromatogram_map_</a>;</div>
<div class="line"><a name="l00220"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">  220</a></span>&#160;    std::map&lt;String, int&gt; <a class="code" href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">transition_map_</a>;</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;  };</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;}</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a8ac2ed3f94ba65e5b4f17e891dd4738a"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a8ac2ed3f94ba65e5b4f17e891dd4738a">OpenMS::MRMTransitionGroup::TransitionsType</a></div><div class="ttdeci">std::vector&lt; TransitionType &gt; TransitionsType</div><div class="ttdoc">List of Reaction Monitoring transitions (meta data) type. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a31b34f54eeee6eebc5ddc5563fb14108"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a31b34f54eeee6eebc5ddc5563fb14108">OpenMS::MRMTransitionGroup::MRMTransitionGroup</a></div><div class="ttdeci">MRMTransitionGroup(const MRMTransitionGroup &amp;rhs)</div><div class="ttdoc">Copy Constructor. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_acc0b3447e282f67aa158ccf375fdb49e"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#acc0b3447e282f67aa158ccf375fdb49e">OpenMS::MRMTransitionGroup::transition_map_</a></div><div class="ttdeci">std::map&lt; String, int &gt; transition_map_</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:220</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_aae4cb8f58b7555960427d28f0e739298"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#aae4cb8f58b7555960427d28f0e739298">OpenMS::MRMTransitionGroup::transitions_</a></div><div class="ttdeci">TransitionsType transitions_</div><div class="ttdoc">transition list </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:211</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a3599bdfacba1b03fa680b7e183dc80ce"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a3599bdfacba1b03fa680b7e183dc80ce">OpenMS::MRMTransitionGroup::getTransitions</a></div><div class="ttdeci">const std::vector&lt; TransitionType &gt; &amp; getTransitions() const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:122</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a671c0bcfdc1474656aabe9b68ad790f6"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a671c0bcfdc1474656aabe9b68ad790f6">OpenMS::MRMTransitionGroup::tr_gr_id_</a></div><div class="ttdeci">String tr_gr_id_</div><div class="ttdoc">transition group id (peak group id) </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:208</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="MRMFeature_8h_html"><div class="ttname"><a href="MRMFeature_8h.html">MRMFeature.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a9d78a687cf2a391198bb3cbc08bc06cb"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a9d78a687cf2a391198bb3cbc08bc06cb">OpenMS::MRMTransitionGroup::size</a></div><div class="ttdeci">Size size() const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_aae528b678f9786dd56f4246fd64ccdf1"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#aae528b678f9786dd56f4246fd64ccdf1">OpenMS::MRMTransitionGroup::chromatogram_map_</a></div><div class="ttdeci">std::map&lt; String, int &gt; chromatogram_map_</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:219</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a4160aecea8784ca4af90f9261307931b"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a4160aecea8784ca4af90f9261307931b">OpenMS::MRMTransitionGroup::getFeatures</a></div><div class="ttdeci">const std::vector&lt; MRMFeature &gt; &amp; getFeatures() const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:174</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_ab85ba106e10787525ec68de539045085"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#ab85ba106e10787525ec68de539045085">OpenMS::MRMTransitionGroup::hasTransition</a></div><div class="ttdeci">bool hasTransition(String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:143</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a84fbe2b625d0885f5e93397ed2122202"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a84fbe2b625d0885f5e93397ed2122202">OpenMS::MRMTransitionGroup::getChromatograms</a></div><div class="ttdeci">const std::vector&lt; SpectrumType &gt; &amp; getChromatograms() const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:148</div></div>
<div class="ttc" id="namespaceOpenMS_html_a013338b7bdbb5c3b4c78666656070e23"><div class="ttname"><a href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">OpenMS::PeakType</a></div><div class="ttdeci">Peak2D PeakType</div><div class="ttdef"><b>Definition:</b> MassTrace.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_aff73c863c0c2c6ff6173deac72567709"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#aff73c863c0c2c6ff6173deac72567709">OpenMS::MRMTransitionGroup::getLibraryIntensity</a></div><div class="ttdeci">void getLibraryIntensity(std::vector&lt; double &gt; &amp;result) const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:189</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a0742bb9ad0ba2486713f2ac99f942dcb"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a0742bb9ad0ba2486713f2ac99f942dcb">OpenMS::MRMTransitionGroup::cons_features_</a></div><div class="ttdeci">MRMFeatureListType cons_features_</div><div class="ttdoc">feature list </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:217</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a1f34797797ee172c37d26e9154cb37be"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a1f34797797ee172c37d26e9154cb37be">OpenMS::MRMTransitionGroup::PeakType</a></div><div class="ttdeci">SpectrumType::PeakType PeakType</div><div class="ttdoc">Peak type. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html">OpenMS::MRMTransitionGroup</a></div><div class="ttdoc">The representation of a transition group that has information about the individual chromatograms as w...</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_ab34186867ca16883370e3745d22a411b"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#ab34186867ca16883370e3745d22a411b">OpenMS::MRMTransitionGroup::operator=</a></div><div class="ttdeci">MRMTransitionGroup &amp; operator=(const MRMTransitionGroup &amp;rhs)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:92</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a2ef73bcc7369977fefdb6cafb2b7599b"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a2ef73bcc7369977fefdb6cafb2b7599b">OpenMS::MRMTransitionGroup::MRMFeatureListType</a></div><div class="ttdeci">std::vector&lt; MRMFeature &gt; MRMFeatureListType</div><div class="ttdoc">Type definitions. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a6b636a97f3625bc651977bcec2a98919"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a6b636a97f3625bc651977bcec2a98919">OpenMS::MRMTransitionGroup::addChromatogram</a></div><div class="ttdeci">void addChromatogram(SpectrumType &amp;chromatogram, String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a5c92d3ef5e22a80e2188a8fd81af3e5a"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a5c92d3ef5e22a80e2188a8fd81af3e5a">OpenMS::MRMTransitionGroup::getFeaturesMuteable</a></div><div class="ttdeci">std::vector&lt; MRMFeature &gt; &amp; getFeaturesMuteable()</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:179</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a57e977750ef7b1d7e8e5f8cce2b91f1e"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a57e977750ef7b1d7e8e5f8cce2b91f1e">OpenMS::MRMTransitionGroup::addTransition</a></div><div class="ttdeci">void addTransition(const TransitionType &amp;transition, String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:132</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_ad54c2606255628d4fe2af3793b1b3da4"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#ad54c2606255628d4fe2af3793b1b3da4">OpenMS::MRMTransitionGroup::addFeature</a></div><div class="ttdeci">void addFeature(MRMFeature &amp;feature)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:184</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_abcc7d915dbacf320f0017b092efcaa27"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#abcc7d915dbacf320f0017b092efcaa27">OpenMS::MRMTransitionGroup::chromatograms_</a></div><div class="ttdeci">std::vector&lt; SpectrumType &gt; chromatograms_</div><div class="ttdoc">chromatogram list </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:214</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_ad5e3b3cdeb8821cc6cd95452ce998604"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#ad5e3b3cdeb8821cc6cd95452ce998604">OpenMS::MRMTransitionGroup::setTransitionGroupID</a></div><div class="ttdeci">void setTransitionGroupID(const String &amp;tr_gr_id)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:117</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a7ec4f785aaca624d2ed4a0a6ad20f721"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a7ec4f785aaca624d2ed4a0a6ad20f721">OpenMS::MRMTransitionGroup::getChromatogram</a></div><div class="ttdeci">SpectrumType &amp; getChromatogram(String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a95de78f330b3bf23b9e87148e04de7b8"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a95de78f330b3bf23b9e87148e04de7b8">OpenMS::MRMTransitionGroup::MRMTransitionGroup</a></div><div class="ttdeci">MRMTransitionGroup()</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:72</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a5a270955de5f4c6dea5ef01b4263702e"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a5a270955de5f4c6dea5ef01b4263702e">OpenMS::MRMTransitionGroup::getTransitionsMuteable</a></div><div class="ttdeci">std::vector&lt; TransitionType &gt; &amp; getTransitionsMuteable()</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a26040296cd269b0e94f4a3ef355709b9"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a26040296cd269b0e94f4a3ef355709b9">OpenMS::MRMTransitionGroup::hasChromatogram</a></div><div class="ttdeci">bool hasChromatogram(String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:169</div></div>
<div class="ttc" id="classOpenMS_1_1MRMFeature_html"><div class="ttname"><a href="classOpenMS_1_1MRMFeature.html">OpenMS::MRMFeature</a></div><div class="ttdoc">A multi-chromatogram MRM feature. </div><div class="ttdef"><b>Definition:</b> MRMFeature.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_aedcd02941cf31e259bb9394850653bbc"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#aedcd02941cf31e259bb9394850653bbc">OpenMS::MRMTransitionGroup::getTransitionGroupID</a></div><div class="ttdeci">const String &amp; getTransitionGroupID() const </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:112</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_ab49c14a84d67d68b055c0aad2a2451a0"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#ab49c14a84d67d68b055c0aad2a2451a0">OpenMS::MRMTransitionGroup::getChromatograms</a></div><div class="ttdeci">std::vector&lt; SpectrumType &gt; &amp; getChromatograms()</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:153</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a1ba3c1530806bf9744ecca05eec89b8a"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a1ba3c1530806bf9744ecca05eec89b8a">OpenMS::MRMTransitionGroup::~MRMTransitionGroup</a></div><div class="ttdeci">virtual ~MRMTransitionGroup()</div><div class="ttdoc">Destructor. </div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1MRMTransitionGroup_html_a72f3eb6e4f2beacf59fb94d10fffd9ba"><div class="ttname"><a href="classOpenMS_1_1MRMTransitionGroup.html#a72f3eb6e4f2beacf59fb94d10fffd9ba">OpenMS::MRMTransitionGroup::getTransition</a></div><div class="ttdeci">const TransitionType &amp; getTransition(String key)</div><div class="ttdef"><b>Definition:</b> MRMTransitionGroup.h:138</div></div>
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