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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_9f700962877a340cb515a8f4e78fa50c.html">TRANSFORMATIONS</a></li><li class="navelem"><a class="el" href="dir_37e9c1b52d0b253b62f883ccdf65930c.html">FEATUREFINDER</a></li><li class="navelem"><a class="el" href="dir_85426f95c54d3036067585334ac23a8c.html">SUPERHIRN</a></li> </ul>
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<div class="title">MS2Feature.h</div> </div>
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<a href="MS2Feature_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Florian Zeller $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Lukas Mueller, Markus Mueller $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="comment"></span><span class="comment">//</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment">// written by Lukas N Mueller, 30.3.05</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment">// Lukas.Mueller@imsb.biol.ethz.ch</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="comment">// Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment">//</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment">// Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment">// December 2010</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="comment">//</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2FEATURE_H</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2FEATURE_H</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <<a class="code" href="MS2Fragment_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Fragment.h</a>></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#include <<a class="code" href="ClusteredMS2ConsensusSpectrum_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.h</a>></span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> {</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Feature.html"> 54</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> :</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  {</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keyword">using</span> ClusteredMS2ConsensusSpectrum::operator=;</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="comment">// declaration of the private members:</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> </div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Feature.html#af180e926633cde08a05ccbc3af397ee4"> 66</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Feature.html#af180e926633cde08a05ccbc3af397ee4">ID</a>;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="comment">// declaration of the public members:</span></div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="comment">// class destructor</span></div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  ~<a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a>();</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="comment">// class constructor</span></div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Feature.html#a182ff6f0cbf62c6086b2c04d6ce72c1e"> 77</a></span>  <a class="code" href="classOpenMS_1_1MS2Feature.html#a182ff6f0cbf62c6086b2c04d6ce72c1e">MS2Feature</a>() {}</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a>(<a class="code" href="classOpenMS_1_1MS2Fragment.html">MS2Fragment</a> *);</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a>(<span class="keywordtype">double</span> iPrecursorMZ, <span class="keywordtype">double</span> iTR, <span class="keywordtype">int</span> iChrg, <span class="keywordtype">int</span> iApexScan);</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> *);</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="comment">// overload operators:</span></div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="comment">//MS2Feature& operator=(const MS2Feature&);</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> & operator<=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> & operator>=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> & operator<(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> & operator>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a> &);</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="comment">// show info</span></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="keywordtype">void</span> show_info();</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> </div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  <span class="comment">// start here all the get / set</span></div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="comment">// function to access the</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="comment">// variables of the class</span></div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00106"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Feature.html#a28f33e86ba1f8657e7b5fc173da31b21"> 106</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Feature.html#a28f33e86ba1f8657e7b5fc173da31b21">setID</a>(<span class="keywordtype">int</span> in){ID = in; }</div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Feature.html#aea93026f92028ac88f6b60cd2f3e438b"> 107</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Feature.html#aea93026f92028ac88f6b60cd2f3e438b">getID</a>(){<span class="keywordflow">return</span> ID; }</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  };</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> } <span class="comment">// ns</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> </div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="preprocessor">#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2FEATURE_H</span></div>
<div class="ttc" id="classOpenMS_1_1MS2Feature_html_a182ff6f0cbf62c6086b2c04d6ce72c1e"><div class="ttname"><a href="classOpenMS_1_1MS2Feature.html#a182ff6f0cbf62c6086b2c04d6ce72c1e">OpenMS::MS2Feature::MS2Feature</a></div><div class="ttdeci">MS2Feature()</div><div class="ttdef"><b>Definition:</b> MS2Feature.h:77</div></div>
<div class="ttc" id="ClusteredMS2ConsensusSpectrum_8h_html"><div class="ttname"><a href="ClusteredMS2ConsensusSpectrum_8h.html">ClusteredMS2ConsensusSpectrum.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MS2Feature_html_aea93026f92028ac88f6b60cd2f3e438b"><div class="ttname"><a href="classOpenMS_1_1MS2Feature.html#aea93026f92028ac88f6b60cd2f3e438b">OpenMS::MS2Feature::getID</a></div><div class="ttdeci">int getID()</div><div class="ttdef"><b>Definition:</b> MS2Feature.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Feature_html"><div class="ttname"><a href="classOpenMS_1_1MS2Feature.html">OpenMS::MS2Feature</a></div><div class="ttdef"><b>Definition:</b> MS2Feature.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">OpenMS::ClusteredMS2ConsensusSpectrum</a></div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Feature_html_af180e926633cde08a05ccbc3af397ee4"><div class="ttname"><a href="classOpenMS_1_1MS2Feature.html#af180e926633cde08a05ccbc3af397ee4">OpenMS::MS2Feature::ID</a></div><div class="ttdeci">int ID</div><div class="ttdef"><b>Definition:</b> MS2Feature.h:66</div></div>
<div class="ttc" id="MS2Fragment_8h_html"><div class="ttname"><a href="MS2Fragment_8h.html">MS2Fragment.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MS2Feature_html_a28f33e86ba1f8657e7b5fc173da31b21"><div class="ttname"><a href="classOpenMS_1_1MS2Feature.html#a28f33e86ba1f8657e7b5fc173da31b21">OpenMS::MS2Feature::setID</a></div><div class="ttdeci">void setID(int in)</div><div class="ttdef"><b>Definition:</b> MS2Feature.h:106</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Fragment_html"><div class="ttname"><a href="classOpenMS_1_1MS2Fragment.html">OpenMS::MS2Fragment</a></div><div class="ttdef"><b>Definition:</b> MS2Fragment.h:59</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:17 using doxygen 1.8.5</font></TD>
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