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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_9f700962877a340cb515a8f4e78fa50c.html">TRANSFORMATIONS</a></li><li class="navelem"><a class="el" href="dir_37e9c1b52d0b253b62f883ccdf65930c.html">FEATUREFINDER</a></li><li class="navelem"><a class="el" href="dir_85426f95c54d3036067585334ac23a8c.html">SUPERHIRN</a></li> </ul>
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<div class="title">MS2Info.h</div> </div>
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<a href="MS2Info_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Florian Zeller $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Lukas Mueller, Markus Mueller $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="comment"></span><span class="comment">//</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment">// written by Lukas N Mueller, 30.3.05</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment">// Lukas.Mueller@imsb.biol.ethz.ch</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="comment">// Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment">//</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment">// Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment">// December 2010</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="comment">//</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2INFO_H</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2INFO_H</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <<a class="code" href="Types_8h.html">OpenMS/CONCEPT/Types.h</a>></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor">#include <string></span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor">#include <map></span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> {</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html"> 57</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  {</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="comment">// declaration of the private members:</span></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> </div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#af180e926633cde08a05ccbc3af397ee4"> 65</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#af180e926633cde08a05ccbc3af397ee4">ID</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a458e8e01da2134d5b1f5d76081dcb92f"> 67</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a458e8e01da2134d5b1f5d76081dcb92f">SQ</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#abeafe64711b6b8206f62ef5155aeb279"> 68</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#abeafe64711b6b8206f62ef5155aeb279">FULL_SQ</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a59c156ab9f95cfa059025e38df632bbe"> 69</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a59c156ab9f95cfa059025e38df632bbe">PREV_AA</a>;</div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ad7e7c0e1723c5bd8039efa5a427c1df2"> 70</a></span>  std::vector<std::string> <a class="code" href="classOpenMS_1_1MS2Info.html#ad7e7c0e1723c5bd8039efa5a427c1df2">AC</a>;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="comment">// std::string ORIGINAL_INTERACT_FILE;</span></div>
<div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a70b375b7757310b2c368b28a88162425"> 72</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a70b375b7757310b2c368b28a88162425">MS2_TYPE_TAG</a>;</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="comment">// peptide prophet analysis:</span></div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ae773d06dc2ecad1fcd510cb81766632b"> 75</a></span>  <span class="keywordtype">float</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ae773d06dc2ecad1fcd510cb81766632b">PEP_PROB</a>;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="comment">// sorcerer search results:</span></div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0ebe3325050eabb84a525de9f5856e6a"> 78</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a0ebe3325050eabb84a525de9f5856e6a">XCORR</a>;</div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ab7b9f0990aed4d4c490a3b9e23949dfe"> 79</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ab7b9f0990aed4d4c490a3b9e23949dfe">DELTA_CN</a>;</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#acf9cc8b997b6cb4566cadf85c1c527d4"> 81</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#acf9cc8b997b6cb4566cadf85c1c527d4">MONO_MZ</a>;</div>
<div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a7db78b097be638415aa73cc6525ec2f2"> 82</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a7db78b097be638415aa73cc6525ec2f2">THEO_MZ</a>;</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#af4c326de22c47e2f311ed4db9848a979"> 83</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#af4c326de22c47e2f311ed4db9848a979">NEUTRAL_MR</a>;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#afc25930836135fb7fa702caf0f87cf98"> 85</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#afc25930836135fb7fa702caf0f87cf98">CHRG</a>;</div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a66fa685ee6e9eed4885cfc0efa5dc75e"> 86</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a66fa685ee6e9eed4885cfc0efa5dc75e">SCAN_START</a>;</div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#aee0a5c202b0f0d94fea906500ae7604b"> 87</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#aee0a5c202b0f0d94fea906500ae7604b">SCAN_END</a>;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#af6d5ab3629ea17ec17a1733f29f8a0d9"> 89</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#af6d5ab3629ea17ec17a1733f29f8a0d9">TR</a>;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a81ee4d9cf1c81427c1d81f2ad910bd07"> 91</a></span>  std::map<int, double> <a class="code" href="classOpenMS_1_1MS2Info.html#a81ee4d9cf1c81427c1d81f2ad910bd07">MOD_LIST</a>;</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="comment">// static values:</span></div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a4fad58c6156dc90b8f78b6ea2de3b68c"> 94</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a4fad58c6156dc90b8f78b6ea2de3b68c">_MONO_H</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ad6b1b4bd2ed3ab4745009801cdd3d4a4"> 95</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ad6b1b4bd2ed3ab4745009801cdd3d4a4">_MONO_O</a>;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="comment">// declaration of the public members:</span></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a8785bd9097eadf4dfe2eaa82cee31d67"> 101</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">double</span> mono_mass[26];</div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#aad15ccc0442859084ee8b088dd93f40f"> 102</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> AA[20];</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> <span class="comment">// static double MS2_TR_TOL;</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> <span class="comment">// static bool THEO_MATCH_MODUS;</span></div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="comment">// static double MS2_MZ_PPM_TOLERANCE;</span></div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="comment">// class destructor</span></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  ~<a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>();</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="comment">// class constructor</span></div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>();</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(std::string, std::string, <span class="keywordtype">float</span>);</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(std::string, std::string, <span class="keywordtype">int</span>, <span class="keywordtype">float</span>);</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(std::string, std::string, <span class="keywordtype">float</span>, <span class="keywordtype">int</span>, <span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> *);</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="comment">// overload operators:</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> & operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> & operator<=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> & operator>=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> & operator<(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> & operator>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MS2Info.html">MS2Info</a> &);</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="comment">// add modification</span></div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keywordtype">void</span> add_modification(<span class="keywordtype">int</span>, <span class="keywordtype">double</span>);</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ad98820bbfa2dfefdc69a7979d120e1a8"> 132</a></span>  std::map<int, double>::iterator <a class="code" href="classOpenMS_1_1MS2Info.html#ad98820bbfa2dfefdc69a7979d120e1a8">get_Modification_list_start</a>()</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  {</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keywordflow">return</span> MOD_LIST.begin();</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  }</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a name="l00137"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a03457880b39b6bb5d9aeadd994f331b9"> 137</a></span>  std::map<int, double>::iterator <a class="code" href="classOpenMS_1_1MS2Info.html#a03457880b39b6bb5d9aeadd994f331b9">get_Modification_list_end</a>()</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  {</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <span class="keywordflow">return</span> MOD_LIST.end();</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  }</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a8fc560e2a53dc41b5882eb6ddf532d76"> 142</a></span>  std::map<int, double>::iterator <a class="code" href="classOpenMS_1_1MS2Info.html#a8fc560e2a53dc41b5882eb6ddf532d76">find_Modification</a>(<span class="keywordtype">int</span> pos)</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  {</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keywordflow">return</span> MOD_LIST.find(pos);</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  }</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00147"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a272582c7e8d95b003b5b313c7d574ab2"> 147</a></span>  std::map<int, double> * <a class="code" href="classOpenMS_1_1MS2Info.html#a272582c7e8d95b003b5b313c7d574ab2">get_Modification_list</a>()</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  {</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keywordflow">return</span> &(MOD_LIST);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  }</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#af221c143d5345837b8c181a160968862"> 152</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MS2Info.html#af221c143d5345837b8c181a160968862">check_MODIFICATION</a>()</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  {</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordflow">return</span> !MOD_LIST.empty();</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  }</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> </div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="comment">// calculates the theoretical mass from a sequence:</span></div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keywordtype">void</span> set_THEO_MASS_from_SQ();</div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#af20ba7314bb42bd1bf86e05b1c809ab3"> 159</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#af20ba7314bb42bd1bf86e05b1c809ab3">get_THEO_MZ</a>()</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  {</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <span class="keywordflow">return</span> THEO_MZ;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  }</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="comment">// sets modificatied SQ:</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordtype">void</span> set_FULL_SQ();</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a58653d5ad9e43a497c2576c5b4a28ef4"> 166</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a58653d5ad9e43a497c2576c5b4a28ef4">set_SQ</a>(std::string IN)</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  {</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  SQ = IN;</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  set_THEO_MASS_from_SQ();</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  set_FULL_SQ();</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  }</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> </div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="comment">// show info:</span></div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="keywordtype">void</span> show_info();</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="comment">// check whethere proteotypic peptide:</span></div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keywordtype">bool</span> get_PROTEO_TYPE();</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="comment">// check the tryptic state:</span></div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="comment">// 2: full tryptic</span></div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="comment">// 1: semi tryptic</span></div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="comment">// 0: non tryptic</span></div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keywordtype">int</span> get_TRYPTIC_STATE();</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> </div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="comment">// AC functions:</span></div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="comment">// check if this AC or not:</span></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <span class="keywordtype">bool</span> compare_AC(std::string);</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <span class="comment">// search a pattern in the AC list:</span></div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="keywordtype">bool</span> search_AC_pattern(std::string);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> </div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="comment">// start here all the get / set</span></div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="comment">// function to access the</span></div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="comment">// variables of the class</span></div>
<div class="line"><a name="l00194"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#abf057eea0474bbd48c969f3cd1d08a53"> 194</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#abf057eea0474bbd48c969f3cd1d08a53">get_SQ</a>()</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  {</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordflow">return</span> SQ;</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  }</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0c7f15c91436e3cb17b3f641e864ac62"> 199</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a0c7f15c91436e3cb17b3f641e864ac62">get_MOD_SQ</a>()</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  {</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordflow">return</span> FULL_SQ;</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  }</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> </div>
<div class="line"><a name="l00204"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a4f4b3d658fa78c6ae3952d0678d66191"> 204</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a4f4b3d658fa78c6ae3952d0678d66191">get_TOTAL_SQ</a>()</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  {</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keywordflow">return</span> get_PREV_AA() + <span class="stringliteral">"."</span> + get_MOD_SQ();</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  }</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span> </div>
<div class="line"><a name="l00209"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#acc7206e6881e8d9cb434cc9aec535607"> 209</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#acc7206e6881e8d9cb434cc9aec535607">get_AC</a>()</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  {</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  <span class="keywordflow">return</span> *(AC.begin());</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  }</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> </div>
<div class="line"><a name="l00214"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a123207b36ef1ffbba14b1eb0884134b4"> 214</a></span>  std::vector<std::string> <a class="code" href="classOpenMS_1_1MS2Info.html#a123207b36ef1ffbba14b1eb0884134b4">get_ALL_AC</a>()</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  {</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordflow">return</span> AC;</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  }</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span> </div>
<div class="line"><a name="l00219"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a9a65562d8d302698f61dc003aa52687e"> 219</a></span>  std::vector<std::string>::iterator <a class="code" href="classOpenMS_1_1MS2Info.html#a9a65562d8d302698f61dc003aa52687e">get_ALL_AC_START</a>()</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  {</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordflow">return</span> AC.begin();</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  }</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> </div>
<div class="line"><a name="l00224"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0668d443bf4578f686fb3e276f1c1003"> 224</a></span>  std::vector<std::string>::iterator <a class="code" href="classOpenMS_1_1MS2Info.html#a0668d443bf4578f686fb3e276f1c1003">get_ALL_AC_END</a>()</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  {</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordflow">return</span> AC.end();</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  }</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordtype">bool</span> find_AC(std::string);</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordtype">void</span> set_AC(std::string);</div>
<div class="line"><a name="l00231"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a97392fb97f17b93415c78e8bfc1921c3"> 231</a></span>  <span class="keywordtype">float</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a97392fb97f17b93415c78e8bfc1921c3">get_PEP_PROB</a>()</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  {</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keywordflow">return</span> PEP_PROB;</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  }</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a9b459be860a3352c1006015d39087f88"> 236</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a9b459be860a3352c1006015d39087f88">set_PEP_PROB</a>(<span class="keywordtype">float</span> IN)</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  {</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  PEP_PROB = IN;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  }</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00241"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a937d985ba474e4f2acc1e23c6ce689fd"> 241</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a937d985ba474e4f2acc1e23c6ce689fd">get_MONO_MZ</a>()</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  {</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="keywordflow">return</span> MONO_MZ;</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  }</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span> </div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordtype">void</span> set_MONO_MZ(<span class="keywordtype">double</span>);</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span> </div>
<div class="line"><a name="l00248"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#acad27d656320f56172cf39b9b870d4fb"> 248</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#acad27d656320f56172cf39b9b870d4fb">get_NEUTRAL_MR</a>()</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  {</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordflow">return</span> NEUTRAL_MR;</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  }</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span> </div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keywordtype">void</span> set_NEUTRAL_MR(<span class="keywordtype">double</span>);</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span> </div>
<div class="line"><a name="l00255"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#acf3016958766052515c20a3625a655d8"> 255</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#acf3016958766052515c20a3625a655d8">get_CHRG</a>()</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  {</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="keywordflow">return</span> CHRG;</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  }</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span> </div>
<div class="line"><a name="l00260"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0fea53aaa7a363839e2fd09bcef9cf2c"> 260</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a0fea53aaa7a363839e2fd09bcef9cf2c">set_CHRG</a>(<span class="keywordtype">int</span> IN)</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  {</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  CHRG = IN;</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span> </div>
<div class="line"><a name="l00265"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a799eae844a4697112d180452ce28438a"> 265</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a799eae844a4697112d180452ce28438a">get_SCAN</a>()</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  {</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordflow">return</span> SCAN_START;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  }</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#aa5231552cde9886b0f896e3636c9cdd9"> 270</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#aa5231552cde9886b0f896e3636c9cdd9">get_SCAN_START</a>()</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  {</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordflow">return</span> SCAN_START;</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  }</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span> </div>
<div class="line"><a name="l00275"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a8dacd3d5179b0e407bfdb645db97bbb0"> 275</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a8dacd3d5179b0e407bfdb645db97bbb0">set_SCAN_START</a>(<span class="keywordtype">int</span> IN)</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  SCAN_START = IN;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  }</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span> </div>
<div class="line"><a name="l00280"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a7358b7a870bf2346a9e9516b785b7658"> 280</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a7358b7a870bf2346a9e9516b785b7658">get_SCAN_END</a>()</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  {</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="keywordflow">return</span> SCAN_END;</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  }</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span> </div>
<div class="line"><a name="l00285"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#aba3da4de7517b4f691738dff7a83b63d"> 285</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#aba3da4de7517b4f691738dff7a83b63d">set_SCAN_END</a>(<span class="keywordtype">int</span> IN)</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  {</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  SCAN_END = IN;</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  }</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div>
<div class="line"><a name="l00290"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a8c70aeac0426a72ea1d06d8bfc30b811"> 290</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a8c70aeac0426a72ea1d06d8bfc30b811">get_ID</a>()</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  {</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordflow">return</span> ID;</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  }</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span> </div>
<div class="line"><a name="l00295"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ae79827313cffe202331cfcfc1382bc92"> 295</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ae79827313cffe202331cfcfc1382bc92">get_DELTA_CN</a>()</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  {</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordflow">return</span> DELTA_CN;</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  }</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> </div>
<div class="line"><a name="l00300"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ab533f4fe9ffd08a4b2e125af78d0862f"> 300</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ab533f4fe9ffd08a4b2e125af78d0862f">set_DELTA_CN</a>(<span class="keywordtype">double</span> IN)</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  {</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  DELTA_CN = IN;</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  }</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span> </div>
<div class="line"><a name="l00305"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a8f0078bb9ff610aa12264c225310489b"> 305</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a8f0078bb9ff610aa12264c225310489b">get_XCORR</a>()</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  {</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="keywordflow">return</span> XCORR;</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  }</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span> </div>
<div class="line"><a name="l00310"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a800c4a99c0b902bec1d898e2fa46b7a2"> 310</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a800c4a99c0b902bec1d898e2fa46b7a2">set_XCORR</a>(<span class="keywordtype">double</span> IN)</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  {</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  XCORR = IN;</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  }</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> </div>
<div class="line"><a name="l00315"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0a5d190393e9a223474a87b7aa87e321"> 315</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a0a5d190393e9a223474a87b7aa87e321">set_MS2_TYPE_TAG</a>(std::string IN)</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  {</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  MS2_TYPE_TAG = IN;</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  }</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span> </div>
<div class="line"><a name="l00320"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ae4ca4d3986e6f48e580fec832e74c2b4"> 320</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#ae4ca4d3986e6f48e580fec832e74c2b4">get_MS2_TYPE_TAG</a>()</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  {</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <span class="keywordflow">return</span> MS2_TYPE_TAG;</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  }</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span> </div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span> <span class="comment">/*</span></div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> <span class="comment"> std::string get_ORIGINAL_INTERACT_FILE()</span></div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> <span class="comment"> {</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> <span class="comment"> return ORIGINAL_INTERACT_FILE;</span></div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span> <span class="comment"> }</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span> <span class="comment"></span></div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> <span class="comment"> void set_ORIGINAL_INTERACT_FILE(std::string IN)</span></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span> <span class="comment"> {</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span> <span class="comment"> ORIGINAL_INTERACT_FILE = IN;</span></div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span> <span class="comment"> }</span></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> <span class="comment">*/</span></div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span> </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <span class="comment">// access the retentino parameter:</span></div>
<div class="line"><a name="l00338"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a0e8a82cd8a90d2032b6682d00ded29f4"> 338</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a0e8a82cd8a90d2032b6682d00ded29f4">getRetentionTime</a>()</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  {</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keywordflow">return</span> TR;</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  }</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span> </div>
<div class="line"><a name="l00343"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#ae860b9adc7e28603458c1deb2014c6da"> 343</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#ae860b9adc7e28603458c1deb2014c6da">setRetentionTime</a>(<span class="keywordtype">double</span> IN)</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  {</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  TR = IN;</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  }</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> </div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keywordtype">double</span> get_MONO_AA_MASS(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span> </div>
<div class="line"><a name="l00350"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a96060950a95936fecfd4a239aca1fa0c"> 350</a></span>  std::string <a class="code" href="classOpenMS_1_1MS2Info.html#a96060950a95936fecfd4a239aca1fa0c">get_PREV_AA</a>()</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  {</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="keywordflow">return</span> PREV_AA;</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  }</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span> </div>
<div class="line"><a name="l00355"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MS2Info.html#a7755c11b73ae63e5fe273f31e12b60d6"> 355</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MS2Info.html#a7755c11b73ae63e5fe273f31e12b60d6">set_PREV_AA</a>(std::string IN)</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  {</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  PREV_AA = IN;</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  }</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span> </div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  };</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span> </div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span> } <span class="comment">// ns</span></div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span> </div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span> <span class="preprocessor">#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_MS2INFO_H</span></div>
<div class="ttc" id="Types_8h_html"><div class="ttname"><a href="Types_8h.html">Types.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ae79827313cffe202331cfcfc1382bc92"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ae79827313cffe202331cfcfc1382bc92">OpenMS::MS2Info::get_DELTA_CN</a></div><div class="ttdeci">double get_DELTA_CN()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:295</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ae860b9adc7e28603458c1deb2014c6da"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ae860b9adc7e28603458c1deb2014c6da">OpenMS::MS2Info::setRetentionTime</a></div><div class="ttdeci">void setRetentionTime(double IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:343</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ad7e7c0e1723c5bd8039efa5a427c1df2"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ad7e7c0e1723c5bd8039efa5a427c1df2">OpenMS::MS2Info::AC</a></div><div class="ttdeci">std::vector< std::string > AC</div><div class="ttdef"><b>Definition:</b> MS2Info.h:70</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a66fa685ee6e9eed4885cfc0efa5dc75e"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a66fa685ee6e9eed4885cfc0efa5dc75e">OpenMS::MS2Info::SCAN_START</a></div><div class="ttdeci">int SCAN_START</div><div class="ttdef"><b>Definition:</b> MS2Info.h:86</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a97392fb97f17b93415c78e8bfc1921c3"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a97392fb97f17b93415c78e8bfc1921c3">OpenMS::MS2Info::get_PEP_PROB</a></div><div class="ttdeci">float get_PEP_PROB()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:231</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a70b375b7757310b2c368b28a88162425"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a70b375b7757310b2c368b28a88162425">OpenMS::MS2Info::MS2_TYPE_TAG</a></div><div class="ttdeci">std::string MS2_TYPE_TAG</div><div class="ttdef"><b>Definition:</b> MS2Info.h:72</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a7db78b097be638415aa73cc6525ec2f2"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a7db78b097be638415aa73cc6525ec2f2">OpenMS::MS2Info::THEO_MZ</a></div><div class="ttdeci">double THEO_MZ</div><div class="ttdef"><b>Definition:</b> MS2Info.h:82</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a800c4a99c0b902bec1d898e2fa46b7a2"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a800c4a99c0b902bec1d898e2fa46b7a2">OpenMS::MS2Info::set_XCORR</a></div><div class="ttdeci">void set_XCORR(double IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:310</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a8fc560e2a53dc41b5882eb6ddf532d76"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a8fc560e2a53dc41b5882eb6ddf532d76">OpenMS::MS2Info::find_Modification</a></div><div class="ttdeci">std::map< int, double >::iterator find_Modification(int pos)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:142</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_afc25930836135fb7fa702caf0f87cf98"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#afc25930836135fb7fa702caf0f87cf98">OpenMS::MS2Info::CHRG</a></div><div class="ttdeci">int CHRG</div><div class="ttdef"><b>Definition:</b> MS2Info.h:85</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_aa5231552cde9886b0f896e3636c9cdd9"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#aa5231552cde9886b0f896e3636c9cdd9">OpenMS::MS2Info::get_SCAN_START</a></div><div class="ttdeci">int get_SCAN_START()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:270</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ab7b9f0990aed4d4c490a3b9e23949dfe"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ab7b9f0990aed4d4c490a3b9e23949dfe">OpenMS::MS2Info::DELTA_CN</a></div><div class="ttdeci">double DELTA_CN</div><div class="ttdef"><b>Definition:</b> MS2Info.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_aee0a5c202b0f0d94fea906500ae7604b"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#aee0a5c202b0f0d94fea906500ae7604b">OpenMS::MS2Info::SCAN_END</a></div><div class="ttdeci">int SCAN_END</div><div class="ttdef"><b>Definition:</b> MS2Info.h:87</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ad98820bbfa2dfefdc69a7979d120e1a8"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ad98820bbfa2dfefdc69a7979d120e1a8">OpenMS::MS2Info::get_Modification_list_start</a></div><div class="ttdeci">std::map< int, double >::iterator get_Modification_list_start()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:132</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_acc7206e6881e8d9cb434cc9aec535607"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#acc7206e6881e8d9cb434cc9aec535607">OpenMS::MS2Info::get_AC</a></div><div class="ttdeci">std::string get_AC()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:209</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a9a65562d8d302698f61dc003aa52687e"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a9a65562d8d302698f61dc003aa52687e">OpenMS::MS2Info::get_ALL_AC_START</a></div><div class="ttdeci">std::vector< std::string >::iterator get_ALL_AC_START()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:219</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_acf3016958766052515c20a3625a655d8"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#acf3016958766052515c20a3625a655d8">OpenMS::MS2Info::get_CHRG</a></div><div class="ttdeci">int get_CHRG()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:255</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a799eae844a4697112d180452ce28438a"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a799eae844a4697112d180452ce28438a">OpenMS::MS2Info::get_SCAN</a></div><div class="ttdeci">int get_SCAN()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:265</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_af180e926633cde08a05ccbc3af397ee4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#af180e926633cde08a05ccbc3af397ee4">OpenMS::MS2Info::ID</a></div><div class="ttdeci">int ID</div><div class="ttdef"><b>Definition:</b> MS2Info.h:65</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a8c70aeac0426a72ea1d06d8bfc30b811"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a8c70aeac0426a72ea1d06d8bfc30b811">OpenMS::MS2Info::get_ID</a></div><div class="ttdeci">int get_ID()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:290</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_abf057eea0474bbd48c969f3cd1d08a53"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#abf057eea0474bbd48c969f3cd1d08a53">OpenMS::MS2Info::get_SQ</a></div><div class="ttdeci">std::string get_SQ()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:194</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a58653d5ad9e43a497c2576c5b4a28ef4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a58653d5ad9e43a497c2576c5b4a28ef4">OpenMS::MS2Info::set_SQ</a></div><div class="ttdeci">void set_SQ(std::string IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:166</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ae4ca4d3986e6f48e580fec832e74c2b4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ae4ca4d3986e6f48e580fec832e74c2b4">OpenMS::MS2Info::get_MS2_TYPE_TAG</a></div><div class="ttdeci">std::string get_MS2_TYPE_TAG()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:320</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_aba3da4de7517b4f691738dff7a83b63d"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#aba3da4de7517b4f691738dff7a83b63d">OpenMS::MS2Info::set_SCAN_END</a></div><div class="ttdeci">void set_SCAN_END(int IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:285</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_abeafe64711b6b8206f62ef5155aeb279"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#abeafe64711b6b8206f62ef5155aeb279">OpenMS::MS2Info::FULL_SQ</a></div><div class="ttdeci">std::string FULL_SQ</div><div class="ttdef"><b>Definition:</b> MS2Info.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a8dacd3d5179b0e407bfdb645db97bbb0"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a8dacd3d5179b0e407bfdb645db97bbb0">OpenMS::MS2Info::set_SCAN_START</a></div><div class="ttdeci">void set_SCAN_START(int IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:275</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a96060950a95936fecfd4a239aca1fa0c"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a96060950a95936fecfd4a239aca1fa0c">OpenMS::MS2Info::get_PREV_AA</a></div><div class="ttdeci">std::string get_PREV_AA()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:350</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ab533f4fe9ffd08a4b2e125af78d0862f"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ab533f4fe9ffd08a4b2e125af78d0862f">OpenMS::MS2Info::set_DELTA_CN</a></div><div class="ttdeci">void set_DELTA_CN(double IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:300</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_acad27d656320f56172cf39b9b870d4fb"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#acad27d656320f56172cf39b9b870d4fb">OpenMS::MS2Info::get_NEUTRAL_MR</a></div><div class="ttdeci">double get_NEUTRAL_MR()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:248</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a7755c11b73ae63e5fe273f31e12b60d6"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a7755c11b73ae63e5fe273f31e12b60d6">OpenMS::MS2Info::set_PREV_AA</a></div><div class="ttdeci">void set_PREV_AA(std::string IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:355</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0a5d190393e9a223474a87b7aa87e321"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0a5d190393e9a223474a87b7aa87e321">OpenMS::MS2Info::set_MS2_TYPE_TAG</a></div><div class="ttdeci">void set_MS2_TYPE_TAG(std::string IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:315</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a7358b7a870bf2346a9e9516b785b7658"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a7358b7a870bf2346a9e9516b785b7658">OpenMS::MS2Info::get_SCAN_END</a></div><div class="ttdeci">int get_SCAN_END()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:280</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_af221c143d5345837b8c181a160968862"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#af221c143d5345837b8c181a160968862">OpenMS::MS2Info::check_MODIFICATION</a></div><div class="ttdeci">bool check_MODIFICATION()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a59c156ab9f95cfa059025e38df632bbe"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a59c156ab9f95cfa059025e38df632bbe">OpenMS::MS2Info::PREV_AA</a></div><div class="ttdeci">std::string PREV_AA</div><div class="ttdef"><b>Definition:</b> MS2Info.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a03457880b39b6bb5d9aeadd994f331b9"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a03457880b39b6bb5d9aeadd994f331b9">OpenMS::MS2Info::get_Modification_list_end</a></div><div class="ttdeci">std::map< int, double >::iterator get_Modification_list_end()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:137</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a4fad58c6156dc90b8f78b6ea2de3b68c"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a4fad58c6156dc90b8f78b6ea2de3b68c">OpenMS::MS2Info::_MONO_H</a></div><div class="ttdeci">static const double _MONO_H</div><div class="ttdef"><b>Definition:</b> MS2Info.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a123207b36ef1ffbba14b1eb0884134b4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a123207b36ef1ffbba14b1eb0884134b4">OpenMS::MS2Info::get_ALL_AC</a></div><div class="ttdeci">std::vector< std::string > get_ALL_AC()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:214</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a9b459be860a3352c1006015d39087f88"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a9b459be860a3352c1006015d39087f88">OpenMS::MS2Info::set_PEP_PROB</a></div><div class="ttdeci">void set_PEP_PROB(float IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:236</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a81ee4d9cf1c81427c1d81f2ad910bd07"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a81ee4d9cf1c81427c1d81f2ad910bd07">OpenMS::MS2Info::MOD_LIST</a></div><div class="ttdeci">std::map< int, double > MOD_LIST</div><div class="ttdef"><b>Definition:</b> MS2Info.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a272582c7e8d95b003b5b313c7d574ab2"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a272582c7e8d95b003b5b313c7d574ab2">OpenMS::MS2Info::get_Modification_list</a></div><div class="ttdeci">std::map< int, double > * get_Modification_list()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:147</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ad6b1b4bd2ed3ab4745009801cdd3d4a4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ad6b1b4bd2ed3ab4745009801cdd3d4a4">OpenMS::MS2Info::_MONO_O</a></div><div class="ttdeci">static const double _MONO_O</div><div class="ttdef"><b>Definition:</b> MS2Info.h:95</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0fea53aaa7a363839e2fd09bcef9cf2c"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0fea53aaa7a363839e2fd09bcef9cf2c">OpenMS::MS2Info::set_CHRG</a></div><div class="ttdeci">void set_CHRG(int IN)</div><div class="ttdef"><b>Definition:</b> MS2Info.h:260</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a458e8e01da2134d5b1f5d76081dcb92f"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a458e8e01da2134d5b1f5d76081dcb92f">OpenMS::MS2Info::SQ</a></div><div class="ttdeci">std::string SQ</div><div class="ttdef"><b>Definition:</b> MS2Info.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_af6d5ab3629ea17ec17a1733f29f8a0d9"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#af6d5ab3629ea17ec17a1733f29f8a0d9">OpenMS::MS2Info::TR</a></div><div class="ttdeci">double TR</div><div class="ttdef"><b>Definition:</b> MS2Info.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a4f4b3d658fa78c6ae3952d0678d66191"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a4f4b3d658fa78c6ae3952d0678d66191">OpenMS::MS2Info::get_TOTAL_SQ</a></div><div class="ttdeci">std::string get_TOTAL_SQ()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:204</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_af20ba7314bb42bd1bf86e05b1c809ab3"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#af20ba7314bb42bd1bf86e05b1c809ab3">OpenMS::MS2Info::get_THEO_MZ</a></div><div class="ttdeci">double get_THEO_MZ()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:159</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0e8a82cd8a90d2032b6682d00ded29f4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0e8a82cd8a90d2032b6682d00ded29f4">OpenMS::MS2Info::getRetentionTime</a></div><div class="ttdeci">double getRetentionTime()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:338</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_af4c326de22c47e2f311ed4db9848a979"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#af4c326de22c47e2f311ed4db9848a979">OpenMS::MS2Info::NEUTRAL_MR</a></div><div class="ttdeci">double NEUTRAL_MR</div><div class="ttdef"><b>Definition:</b> MS2Info.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0ebe3325050eabb84a525de9f5856e6a"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0ebe3325050eabb84a525de9f5856e6a">OpenMS::MS2Info::XCORR</a></div><div class="ttdeci">double XCORR</div><div class="ttdef"><b>Definition:</b> MS2Info.h:78</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a8f0078bb9ff610aa12264c225310489b"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a8f0078bb9ff610aa12264c225310489b">OpenMS::MS2Info::get_XCORR</a></div><div class="ttdeci">double get_XCORR()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:305</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_acf9cc8b997b6cb4566cadf85c1c527d4"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#acf9cc8b997b6cb4566cadf85c1c527d4">OpenMS::MS2Info::MONO_MZ</a></div><div class="ttdeci">double MONO_MZ</div><div class="ttdef"><b>Definition:</b> MS2Info.h:81</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0c7f15c91436e3cb17b3f641e864ac62"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0c7f15c91436e3cb17b3f641e864ac62">OpenMS::MS2Info::get_MOD_SQ</a></div><div class="ttdeci">std::string get_MOD_SQ()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:199</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_ae773d06dc2ecad1fcd510cb81766632b"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#ae773d06dc2ecad1fcd510cb81766632b">OpenMS::MS2Info::PEP_PROB</a></div><div class="ttdeci">float PEP_PROB</div><div class="ttdef"><b>Definition:</b> MS2Info.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a0668d443bf4578f686fb3e276f1c1003"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a0668d443bf4578f686fb3e276f1c1003">OpenMS::MS2Info::get_ALL_AC_END</a></div><div class="ttdeci">std::vector< std::string >::iterator get_ALL_AC_END()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:224</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html">OpenMS::MS2Info</a></div><div class="ttdef"><b>Definition:</b> MS2Info.h:57</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Info_html_a937d985ba474e4f2acc1e23c6ce689fd"><div class="ttname"><a href="classOpenMS_1_1MS2Info.html#a937d985ba474e4f2acc1e23c6ce689fd">OpenMS::MS2Info::get_MONO_MZ</a></div><div class="ttdeci">double get_MONO_MZ()</div><div class="ttdef"><b>Definition:</b> MS2Info.h:241</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:17 using doxygen 1.8.5</font></TD>
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