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<a href="MSChromatogram_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Andreas Bertsch $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_KERNEL_MSCHROMATOGRAM_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_MSCHROMATOGRAM_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="ChromatogramSettings_8h.html">OpenMS/METADATA/ChromatogramSettings.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="MetaInfoDescription_8h.html">OpenMS/METADATA/MetaInfoDescription.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="PersistentObject_8h.html">OpenMS/FORMAT/DB/PersistentObject.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="RangeManager_8h.html">OpenMS/KERNEL/RangeManager.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="ComparatorUtils_8h.html">OpenMS/KERNEL/ComparatorUtils.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="ChromatogramPeak_8h.html">OpenMS/KERNEL/ChromatogramPeak.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> PeakT = ChromatogramPeak></div>
<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html"> 53</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> :</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keyword">public</span> std::vector<PeakT>,</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><1>,</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a>,</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  {</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram_1_1FloatDataArray.html"> 63</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MSChromatogram_1_1FloatDataArray.html">FloatDataArray</a> :</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoDescription.html">MetaInfoDescription</a>,</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keyword">public</span> std::vector<Real></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  {};</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram_1_1StringDataArray.html"> 69</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MSChromatogram_1_1StringDataArray.html">StringDataArray</a> :</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoDescription.html">MetaInfoDescription</a>,</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">public</span> std::vector<String></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  {};</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram_1_1IntegerDataArray.html"> 75</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MSChromatogram_1_1IntegerDataArray.html">IntegerDataArray</a> :</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoDescription.html">MetaInfoDescription</a>,</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keyword">public</span> std::vector<Int></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  {};</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSChromatogram_1_1MZLess.html"> 81</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1MSChromatogram_1_1MZLess.html">MZLess</a> :</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="keyword">public</span> std::binary_function<MSChromatogram, MSChromatogram, bool></div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  {</div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSChromatogram_1_1MZLess.html#a393671a76440a8bee5518de063d72c9d"> 84</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1MSChromatogram_1_1MZLess.html#a393671a76440a8bee5518de063d72c9d">operator()</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & a, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & b)<span class="keyword"> const</span></div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <span class="keywordflow">return</span> a.<a class="code" href="classOpenMS_1_1MSChromatogram.html#adf13f6e49cf05563669b4481aaced5f2">getMZ</a>() < b.<a class="code" href="classOpenMS_1_1MSChromatogram.html#adf13f6e49cf05563669b4481aaced5f2">getMZ</a>();</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  }</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  };</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b"> 94</a></span>  <span class="keyword">typedef</span> <a class="code" href="classPeakT.html">PeakT</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a>;</div>
<div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a181486a43da338e31f089df7661f50bb"> 96</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classdouble.html">PeakType::CoordinateType</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1"> 98</a></span>  <span class="keyword">typedef</span> std::vector<PeakType> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">ContainerType</a>;</div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774"> 100</a></span>  <span class="keyword">typedef</span> std::vector<FloatDataArray> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774">FloatDataArrays</a>;</div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717"> 102</a></span>  <span class="keyword">typedef</span> std::vector<StringDataArray> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717">StringDataArrays</a>;</div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f"> 104</a></span>  <span class="keyword">typedef</span> std::vector<IntegerDataArray> <a class="code" href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f">IntegerDataArrays</a>;</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> ContainerType::iterator <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114"> 112</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> ContainerType::const_iterator <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a>;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a51a3ad04d9563aaf0db6f849c0b5e52c"> 114</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> ContainerType::reverse_iterator <a class="code" href="classOpenMS_1_1MSChromatogram.html#a51a3ad04d9563aaf0db6f849c0b5e52c">ReverseIterator</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a61a738aaacdceb2692d545836198fb94"> 116</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> ContainerType::const_reverse_iterator <a class="code" href="classOpenMS_1_1MSChromatogram.html#a61a738aaacdceb2692d545836198fb94">ConstReverseIterator</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a6fd966eb4e57b7a905e3a88d13c8408d"> 121</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6fd966eb4e57b7a905e3a88d13c8408d">MSChromatogram</a>() :</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">ContainerType</a>(),</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><1>(),</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <a class="code" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a>(),</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a>(),</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>(),</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>(),</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>(),</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>()</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  {}</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aaf11666dc886ac34473cf47b83f5a99c"> 133</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#aaf11666dc886ac34473cf47b83f5a99c">MSChromatogram</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & source) :</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">ContainerType</a>(source),</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><1>(source),</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <a class="code" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a>(source),</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a>(source),</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>(source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>),</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>(source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>),</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>(source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>),</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>(source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>)</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  {}</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a name="l00145"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ad0a6b1c07f0cc642bdf2024adc39c436"> 145</a></span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ad0a6b1c07f0cc642bdf2024adc39c436">~MSChromatogram</a>()</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  {}</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a451f36bed614c68ef9ac9577d6ce6a96"> 149</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#a451f36bed614c68ef9ac9577d6ce6a96">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & source)</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  {</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  <span class="keywordflow">if</span> (&source == <span class="keyword">this</span>) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  ContainerType::operator=(source);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManager<1>::operator=</a>(source);</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a6c3c38d51ece74ac60d509570e51cb8f">ChromatogramSettings::operator=</a>(source);</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html#aede71eb0c7f871a5415bb4757f8faec5">PersistentObject::operator=</a>(source);</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a> = source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a> = source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>;</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a> = source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a> = source.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  }</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> </div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ad4d5d1f858e7bb4f0ebba4efd5127437"> 167</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ad4d5d1f858e7bb4f0ebba4efd5127437">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="comment">//name_ can differ => it is not checked</span></div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="keywordflow">return</span> std::operator==(*<span class="keyword">this</span>, rhs) &&</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#afd83f7e639b59d37a1ea380d935ec4eb">RangeManager<1>::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a9b96ebee455860352d61365db52073dc">ChromatogramSettings::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a> == rhs.<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a> &&</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a> == rhs.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a> &&</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a> == rhs.<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>;</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00179"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a754a1ac4301eaac76b8afd5aa0eb7c18"> 179</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a754a1ac4301eaac76b8afd5aa0eb7c18">operator!=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordflow">return</span> !(<a class="code" href="classOpenMS_1_1MSChromatogram.html#ad4d5d1f858e7bb4f0ebba4efd5127437">operator==</a>(rhs));</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  }</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> </div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="comment">// Docu in base class (RangeManager)</span></div>
<div class="line"><a name="l00185"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ae6cec659c6191c8cb73a1f6af8eba1cd"> 185</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ae6cec659c6191c8cb73a1f6af8eba1cd">updateRanges</a>()</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  {</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#a1b01c1c3871aad142893e20d17afc340">updateRanges_</a>(ContainerType::begin(), ContainerType::end());</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  }</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> </div>
<div class="line"><a name="l00194"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aaee0f2845288173de9f6ad47e6ad31d5"> 194</a></span>  <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>;</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  }</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00200"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a77d37f2e1c12e8bd33ea0e660a89e927"> 200</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & name)</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  {</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a> = name;</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  }</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00208"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#adf13f6e49cf05563669b4481aaced5f2"> 208</a></span>  <span class="keyword">inline</span> <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#adf13f6e49cf05563669b4481aaced5f2">getMZ</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1ChromatogramSettings.html#ad315e04a79cddc41e8e12d92086e46d6">getProduct</a>().<a class="code" href="classOpenMS_1_1Product.html#adf13f6e49cf05563669b4481aaced5f2">getMZ</a>();</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  }</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774">FloatDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#a57213d8c30f9d5d0d6fb3fb472d21f05">getFloatDataArrays</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>;</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  }</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00233"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a0b5b5acc0129822bda6df1f6e8e6a85f"> 233</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774">FloatDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#a0b5b5acc0129822bda6df1f6e8e6a85f">getFloatDataArrays</a>()</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  {</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>;</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  }</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span> </div>
<div class="line"><a name="l00239"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ace039d325c112e45c9d37e0e656ba9a2"> 239</a></span>  <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717">StringDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#ace039d325c112e45c9d37e0e656ba9a2">getStringDataArrays</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>;</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  }</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span> </div>
<div class="line"><a name="l00245"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a500419f30fdcecc8924b942e2c1474bc"> 245</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717">StringDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#a500419f30fdcecc8924b942e2c1474bc">getStringDataArrays</a>()</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  {</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>;</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  }</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span> </div>
<div class="line"><a name="l00251"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a8b3a6d95f436cb3c0e8f57e526f32ed1"> 251</a></span>  <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f">IntegerDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8b3a6d95f436cb3c0e8f57e526f32ed1">getIntegerDataArrays</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>;</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  }</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span> </div>
<div class="line"><a name="l00257"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#af276a4b8e9dcc0f2dd65c75d03312a89"> 257</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f">IntegerDataArrays</a> & <a class="code" href="classOpenMS_1_1MSChromatogram.html#af276a4b8e9dcc0f2dd65c75d03312a89">getIntegerDataArrays</a>()</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  {</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>;</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  }</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span> </div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span> </div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span> </div>
<div class="line"><a name="l00271"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a93f1c9f620403aec160d98e83e125502"> 271</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a93f1c9f620403aec160d98e83e125502">sortByIntensity</a>(<span class="keywordtype">bool</span> reverse = <span class="keyword">false</span>)</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  {</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>.empty() && <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>.size() && <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>.size())</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  {</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordflow">if</span> (reverse)</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  std::sort(ContainerType::begin(), ContainerType::end(), <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">PeakType::IntensityLess</a>()));</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  }</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  {</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  std::sort(ContainerType::begin(), ContainerType::end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">PeakType::IntensityLess</a>());</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  }</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  }</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  {</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="comment">//sort index list</span></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  std::vector<std::pair<typename PeakType::IntensityType, Size> > sorted_indices;</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  sorted_indices.reserve(ContainerType::size());</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < ContainerType::size(); ++i)</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  {</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  sorted_indices.push_back(std::make_pair(ContainerType::operator[](i).getIntensity(), i));</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  }</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span> </div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <span class="keywordflow">if</span> (reverse)</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  {</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  std::sort(sorted_indices.begin(), sorted_indices.end(), <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<a class="code" href="structOpenMS_1_1PairComparatorFirstElement.html">PairComparatorFirstElement</a><std::pair<typename PeakType::IntensityType, Size> >()));</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  }</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  {</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  std::sort(sorted_indices.begin(), sorted_indices.end(), <a class="code" href="structOpenMS_1_1PairComparatorFirstElement.html">PairComparatorFirstElement<std::pair<typename PeakType::IntensityType, Size></a> >());</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  }</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="comment">//apply sorting to ContainerType and to meta data arrays</span></div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">ContainerType</a> tmp;</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < sorted_indices.size(); ++i)</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  {</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  tmp.push_back(*(ContainerType::begin() + (sorted_indices[i].second)));</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  }</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  ContainerType::swap(tmp);</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span> </div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  {</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  std::vector<Real> mda_tmp;</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  {</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  }</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i].swap(mda_tmp);</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> </div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  {</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  std::vector<String> mda_tmp;</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  {</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  }</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i].swap(mda_tmp);</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  }</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span> </div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  {</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  std::vector<Int> mda_tmp;</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  {</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  }</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i].swap(mda_tmp);</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  }</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  }</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  }</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a86f7b200260209865e730a2e4fcaa628"> 349</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a86f7b200260209865e730a2e4fcaa628">sortByPosition</a>()</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  {</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>.empty())</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  {</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  std::sort(ContainerType::begin(), ContainerType::end(), <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  {</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  <span class="comment">//sort index list</span></div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  std::vector<std::pair<typename PeakType::PositionType, Size> > sorted_indices;</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  sorted_indices.reserve(ContainerType::size());</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < ContainerType::size(); ++i)</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  {</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  sorted_indices.push_back(std::make_pair(ContainerType::operator[](i).getPosition(), i));</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  std::sort(sorted_indices.begin(), sorted_indices.end(), <a class="code" href="structOpenMS_1_1PairComparatorFirstElement.html">PairComparatorFirstElement<std::pair<typename PeakType::PositionType, Size></a> >());</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span> </div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <span class="comment">//apply sorting to ContainerType and to metadataarrays</span></div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">ContainerType</a> tmp;</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < sorted_indices.size(); ++i)</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  {</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  tmp.push_back(*(ContainerType::begin() + (sorted_indices[i].second)));</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  }</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  ContainerType::swap(tmp);</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> </div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  {</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  std::vector<Real> mda_tmp;</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  {</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  }</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  std::swap(<a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>[i], mda_tmp);</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  }</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> </div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  {</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  std::vector<String> mda_tmp;</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  {</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  }</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  std::swap(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>[i], mda_tmp);</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  }</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>.size(); ++i)</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  {</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  std::vector<Int> mda_tmp;</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> j = 0; j < <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i].size(); ++j)</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  {</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  mda_tmp.push_back(*(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i].begin() + (sorted_indices[j].second)));</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  }</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  std::swap(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>[i], mda_tmp);</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  }</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  }</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  }</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span> </div>
<div class="line"><a name="l00407"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ada8ccbfae8ad9120b791b43000fc6dda"> 407</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ada8ccbfae8ad9120b791b43000fc6dda">isSorted</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 1; i < this->size(); ++i)</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  {</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="keywordflow">if</span> (this-><span class="keyword">operator</span>[](i - 1).getRT() > this->operator[](i).getRT()) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  }</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  }</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span> </div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span> </div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span> </div>
<div class="line"><a name="l00430"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aa5d64b2c79ea6c54aff77e3a236173f5"> 430</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#aa5d64b2c79ea6c54aff77e3a236173f5">findNearest</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)<span class="keyword"> const</span></div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="comment">//no peak => no search</span></div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  <span class="keywordflow">if</span> (ContainerType::size() == 0) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1Precondition.html">Exception::Precondition</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, <span class="stringliteral">"There must be at least one peak to determine the nearest peak!"</span>);</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span> </div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="comment">//search for position for inserting</span></div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> it = <a class="code" href="classOpenMS_1_1MSChromatogram.html#aaa28bff92147612bdfc8ac6892395c93">RTBegin</a>(rt);</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="comment">//border cases</span></div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  <span class="keywordflow">if</span> (it == ContainerType::begin()) <span class="keywordflow">return</span> 0;</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> </div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="keywordflow">if</span> (it == ContainerType::end()) <span class="keywordflow">return</span> ContainerType::size() - 1;</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span> </div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="comment">//the peak before or the current peak are closest</span></div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> it2 = it;</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  --it2;</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  <span class="keywordflow">if</span> (std::fabs(it->getRT() - rt) < std::fabs(it2->getRT() - rt))</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  {</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keywordflow">return</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>(it - ContainerType::begin());</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  }</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  {</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  <span class="keywordflow">return</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>(it2 - ContainerType::begin());</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  }</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  }</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> </div>
<div class="line"><a name="l00461"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aaa28bff92147612bdfc8ac6892395c93"> 461</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#aaa28bff92147612bdfc8ac6892395c93">RTBegin</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  {</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  <span class="keywordflow">return</span> lower_bound(ContainerType::begin(), ContainerType::end(), p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  }</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> </div>
<div class="line"><a name="l00474"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#af8afe7b3d366d9a61664c0805db3b1a4"> 474</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#af8afe7b3d366d9a61664c0805db3b1a4">RTBegin</a>(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> begin, <a class="code" href="classdouble.html">CoordinateType</a> rt, <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> end)</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  {</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  <span class="keywordflow">return</span> lower_bound(begin, end, p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  }</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> </div>
<div class="line"><a name="l00487"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a5f9b950ce9dd8beba1afb32cc934b567"> 487</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a5f9b950ce9dd8beba1afb32cc934b567">RTEnd</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  {</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  <span class="keywordflow">return</span> upper_bound(ContainerType::begin(), ContainerType::end(), p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  }</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span> </div>
<div class="line"><a name="l00500"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a5d71e35a3b33916bda93aecc27fd75b6"> 500</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a5d71e35a3b33916bda93aecc27fd75b6">RTEnd</a>(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> begin, <a class="code" href="classdouble.html">CoordinateType</a> rt, <a class="code" href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">Iterator</a> end)</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  {</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <span class="keywordflow">return</span> upper_bound(begin, end, p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  }</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span> </div>
<div class="line"><a name="l00513"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#adb2f0f3e10754ca4dc7be677f15689a3"> 513</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#adb2f0f3e10754ca4dc7be677f15689a3">RTBegin</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)<span class="keyword"> const</span></div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">return</span> lower_bound(ContainerType::begin(), ContainerType::end(), p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  }</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a name="l00526"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a9665faf97a805398a171489c9b0660ed"> 526</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9665faf97a805398a171489c9b0660ed">RTBegin</a>(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> begin, <a class="code" href="classdouble.html">CoordinateType</a> rt, <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> end)<span class="keyword"> const</span></div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="keywordflow">return</span> lower_bound(begin, end, p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  }</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span> </div>
<div class="line"><a name="l00539"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aecc2b466c4b527df363f5b1287a5e646"> 539</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#aecc2b466c4b527df363f5b1287a5e646">RTEnd</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)<span class="keyword"> const</span></div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span>  <span class="keywordflow">return</span> upper_bound(ContainerType::begin(), ContainerType::end(), p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span>  }</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span> </div>
<div class="line"><a name="l00552"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a04180872c118391b344405c6a5ce1a72"> 552</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a04180872c118391b344405c6a5ce1a72">RTEnd</a>(<a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> begin, <a class="code" href="classdouble.html">CoordinateType</a> rt, <a class="code" href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">ConstIterator</a> end)<span class="keyword"> const</span></div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a> p;</div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  p.setPosition(rt);</div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  <span class="keywordflow">return</span> upper_bound(begin, end, p, <span class="keyword">typename</span> <a class="code" href="structOpenMS_1_1Peak2D_1_1PositionLess.html">PeakType::PositionLess</a>());</div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  }</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span> </div>
<div class="line"><a name="l00564"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#af072fc84225ae927f7527f208ea86cbd"> 564</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#af072fc84225ae927f7527f208ea86cbd">clear</a>(<span class="keywordtype">bool</span> clear_meta_data)</div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  {</div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  ContainerType::clear();</div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span> </div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  <span class="keywordflow">if</span> (clear_meta_data)</div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  {</div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html#ad88b5f0f6c90153e67e86b0b761e54c4">clearId</a>();</div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span>  this-><a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a6c3c38d51ece74ac60d509570e51cb8f">ChromatogramSettings::operator=</a>(<a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a8ead37c592b183dea7a55de90ddcff39">ChromatogramSettings</a>()); <span class="comment">// no "clear" method</span></div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>.clear();</div>
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>.clear();</div>
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>.clear();</div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>.clear();</div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  }</div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span>  }</div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span> </div>
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span> </div>
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span>  <span class="comment">// Docu in base class</span></div>
<div class="line"><a name="l00584"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#aca192a8c89187e4311eacc9daa073c7b"> 584</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html#aca192a8c89187e4311eacc9daa073c7b">clearChildIds_</a>()</div>
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  {}</div>
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span> </div>
<div class="line"><a name="l00588"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f"> 588</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>;</div>
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span> </div>
<div class="line"><a name="l00591"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d"> 591</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774">FloatDataArrays</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">float_data_arrays_</a>;</div>
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span> </div>
<div class="line"><a name="l00594"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d"> 594</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717">StringDataArrays</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">string_data_arrays_</a>;</div>
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span> </div>
<div class="line"><a name="l00597"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5"> 597</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f">IntegerDataArrays</a> <a class="code" href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">integer_data_arrays_</a>;</div>
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span>  };</div>
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span> </div>
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> PeakT></div>
<div class="line"><a name="l00602"></a><span class="lineno"><a class="line" href="namespaceOpenMS.html#ac90f390b23c01d99b3376d9bdc3c209e"> 602</a></span>  std::ostream & operator<<(std::ostream & os, const MSChromatogram<PeakT> & spec)</div>
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span>  {</div>
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span>  os << <span class="stringliteral">"-- MSSPECTRUM BEGIN --"</span> << std::endl;</div>
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span> </div>
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  <span class="comment">//chromatogram settings</span></div>
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span>  os << static_cast<const ChromatogramSettings &>(spec);</div>
<div class="line"><a name="l00608"></a><span class="lineno"> 608</span> </div>
<div class="line"><a name="l00609"></a><span class="lineno"> 609</span>  <span class="comment">//peaklist</span></div>
<div class="line"><a name="l00610"></a><span class="lineno"> 610</span>  os << static_cast<const typename MSChromatogram<PeakT>::ContainerType &>(spec);</div>
<div class="line"><a name="l00611"></a><span class="lineno"> 611</span> </div>
<div class="line"><a name="l00612"></a><span class="lineno"> 612</span>  os << <span class="stringliteral">"-- MSSPECTRUM END --"</span> << std::endl;</div>
<div class="line"><a name="l00613"></a><span class="lineno"> 613</span> </div>
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span>  <span class="keywordflow">return</span> os;</div>
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span>  }</div>
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span> </div>
<div class="line"><a name="l00617"></a><span class="lineno"> 617</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span> </div>
<div class="line"><a name="l00619"></a><span class="lineno"> 619</span> <span class="preprocessor">#endif // OPENMS_KERNEL_MSCHROMATOGRAM_H</span></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aaa28bff92147612bdfc8ac6892395c93"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aaa28bff92147612bdfc8ac6892395c93">OpenMS::MSChromatogram::RTBegin</a></div><div class="ttdeci">Iterator RTBegin(CoordinateType rt)</div><div class="ttdoc">Binary search for peak range begin. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:461</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a5d71e35a3b33916bda93aecc27fd75b6"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a5d71e35a3b33916bda93aecc27fd75b6">OpenMS::MSChromatogram::RTEnd</a></div><div class="ttdeci">Iterator RTEnd(Iterator begin, CoordinateType rt, Iterator end)</div><div class="ttdoc">Binary search for peak range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:500</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a0b5b5acc0129822bda6df1f6e8e6a85f"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a0b5b5acc0129822bda6df1f6e8e6a85f">OpenMS::MSChromatogram::getFloatDataArrays</a></div><div class="ttdeci">FloatDataArrays & getFloatDataArrays()</div><div class="ttdoc">Returns a mutable reference to the float meta data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:233</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ac088ffba4eafe149ed7eec07b2c8dd6d"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ac088ffba4eafe149ed7eec07b2c8dd6d">OpenMS::MSChromatogram::float_data_arrays_</a></div><div class="ttdeci">FloatDataArrays float_data_arrays_</div><div class="ttdoc">Float data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:591</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aaee0f2845288173de9f6ad47e6ad31d5"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aaee0f2845288173de9f6ad47e6ad31d5">OpenMS::MSChromatogram::getName</a></div><div class="ttdeci">const String & getName() const </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:194</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ad4d5d1f858e7bb4f0ebba4efd5127437"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ad4d5d1f858e7bb4f0ebba4efd5127437">OpenMS::MSChromatogram::operator==</a></div><div class="ttdeci">bool operator==(const MSChromatogram &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:167</div></div>
<div class="ttc" id="classPeakT_html"><div class="ttname"><a href="classPeakT.html">PeakT</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aa5d64b2c79ea6c54aff77e3a236173f5"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aa5d64b2c79ea6c54aff77e3a236173f5">OpenMS::MSChromatogram::findNearest</a></div><div class="ttdeci">Size findNearest(CoordinateType rt) const </div><div class="ttdoc">Binary search for the peak nearest to a specific RT. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:430</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_af14ca4038225ce7df759d874b6d79c3f"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#af14ca4038225ce7df759d874b6d79c3f">OpenMS::MSChromatogram::IntegerDataArrays</a></div><div class="ttdeci">std::vector< IntegerDataArray > IntegerDataArrays</div><div class="ttdoc">Integer data array vector type. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram</a></div><div class="ttdoc">The representation of a chromatogram. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a6d64276a665c3c0dca8fb4ade3c8b477"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a6d64276a665c3c0dca8fb4ade3c8b477">OpenMS::MSChromatogram::Iterator</a></div><div class="ttdeci">ContainerType::iterator Iterator</div><div class="ttdoc">Mutable iterator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:110</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a60924125270eaedd6dc0316cda33bcf1"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a60924125270eaedd6dc0316cda33bcf1">OpenMS::MSChromatogram::ContainerType</a></div><div class="ttdeci">std::vector< PeakType > ContainerType</div><div class="ttdoc">Chromatogram base type. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aecc2b466c4b527df363f5b1287a5e646"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aecc2b466c4b527df363f5b1287a5e646">OpenMS::MSChromatogram::RTEnd</a></div><div class="ttdeci">ConstIterator RTEnd(CoordinateType rt) const </div><div class="ttdoc">Binary search for peak range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:539</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_af8afe7b3d366d9a61664c0805db3b1a4"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#af8afe7b3d366d9a61664c0805db3b1a4">OpenMS::MSChromatogram::RTBegin</a></div><div class="ttdeci">Iterator RTBegin(Iterator begin, CoordinateType rt, Iterator end)</div><div class="ttdoc">Binary search for peak range begin. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:474</div></div>
<div class="ttc" id="structOpenMS_1_1MSChromatogram_1_1MZLess_html_a393671a76440a8bee5518de063d72c9d"><div class="ttname"><a href="structOpenMS_1_1MSChromatogram_1_1MZLess.html#a393671a76440a8bee5518de063d72c9d">OpenMS::MSChromatogram::MZLess::operator()</a></div><div class="ttdeci">bool operator()(const MSChromatogram &a, const MSChromatogram &b) const </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_1_1IntegerDataArray_html"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram_1_1IntegerDataArray.html">OpenMS::MSChromatogram::IntegerDataArray</a></div><div class="ttdoc">Float data array class. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ace039d325c112e45c9d37e0e656ba9a2"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ace039d325c112e45c9d37e0e656ba9a2">OpenMS::MSChromatogram::getStringDataArrays</a></div><div class="ttdeci">const StringDataArrays & getStringDataArrays() const </div><div class="ttdoc">Returns a const reference to the string meta data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:239</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74e80d32be63268d8a46039297e18cc6"><div class="ttname"><a href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">OpenMS::reverseComparator</a></div><div class="ttdeci">ReverseComparator< Cmp > reverseComparator(Cmp const &cmp)</div><div class="ttdoc">Make-function to create a ReverseComparator from another comparator without the need to specify the t...</div><div class="ttdef"><b>Definition:</b> ComparatorUtils.h:261</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_adb2f0f3e10754ca4dc7be677f15689a3"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#adb2f0f3e10754ca4dc7be677f15689a3">OpenMS::MSChromatogram::RTBegin</a></div><div class="ttdeci">ConstIterator RTBegin(CoordinateType rt) const </div><div class="ttdoc">Binary search for peak range begin. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:513</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a181486a43da338e31f089df7661f50bb"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a181486a43da338e31f089df7661f50bb">OpenMS::MSChromatogram::CoordinateType</a></div><div class="ttdeci">PeakType::CoordinateType CoordinateType</div><div class="ttdoc">Coordinate (RT) type. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:96</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1IntensityLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">OpenMS::Peak2D::IntensityLess</a></div><div class="ttdef"><b>Definition:</b> Peak2D.h:246</div></div>
<div class="ttc" id="ChromatogramSettings_8h_html"><div class="ttname"><a href="ChromatogramSettings_8h.html">ChromatogramSettings.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_afd83f7e639b59d37a1ea380d935ec4eb"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#afd83f7e639b59d37a1ea380d935ec4eb">OpenMS::RangeManager::operator==</a></div><div class="ttdeci">bool operator==(const RangeManager &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1Precondition_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1Precondition.html">OpenMS::Exception::Precondition</a></div><div class="ttdoc">Precondition failed exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoDescription_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfoDescription.html">OpenMS::MetaInfoDescription</a></div><div class="ttdoc">Description of the meta data arrays of MSSpectrum. </div><div class="ttdef"><b>Definition:</b> MetaInfoDescription.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a4895afe86c2aa0747ae0411c58c82114"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a4895afe86c2aa0747ae0411c58c82114">OpenMS::MSChromatogram::ConstIterator</a></div><div class="ttdeci">ContainerType::const_iterator ConstIterator</div><div class="ttdoc">Non-mutable iterator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:112</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a77d37f2e1c12e8bd33ea0e660a89e927"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a77d37f2e1c12e8bd33ea0e660a89e927">OpenMS::MSChromatogram::setName</a></div><div class="ttdeci">void setName(const String &name)</div><div class="ttdoc">Sets the name. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:200</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a5f9b950ce9dd8beba1afb32cc934b567"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a5f9b950ce9dd8beba1afb32cc934b567">OpenMS::MSChromatogram::RTEnd</a></div><div class="ttdeci">Iterator RTEnd(CoordinateType rt)</div><div class="ttdoc">Binary search for peak range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:487</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ae6cec659c6191c8cb73a1f6af8eba1cd"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ae6cec659c6191c8cb73a1f6af8eba1cd">OpenMS::MSChromatogram::updateRanges</a></div><div class="ttdeci">virtual void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:185</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a500419f30fdcecc8924b942e2c1474bc"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a500419f30fdcecc8924b942e2c1474bc">OpenMS::MSChromatogram::getStringDataArrays</a></div><div class="ttdeci">StringDataArrays & getStringDataArrays()</div><div class="ttdoc">Returns a mutable reference to the string meta data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:245</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a6fd966eb4e57b7a905e3a88d13c8408d"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a6fd966eb4e57b7a905e3a88d13c8408d">OpenMS::MSChromatogram::MSChromatogram</a></div><div class="ttdeci">MSChromatogram()</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:121</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1PositionLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1PositionLess.html">OpenMS::Peak2D::PositionLess</a></div><div class="ttdoc">Comparator by position. Lexicographical comparison (first RT then m/z) is done. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:324</div></div>
<div class="ttc" id="ComparatorUtils_8h_html"><div class="ttname"><a href="ComparatorUtils_8h.html">ComparatorUtils.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a9665faf97a805398a171489c9b0660ed"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a9665faf97a805398a171489c9b0660ed">OpenMS::MSChromatogram::RTBegin</a></div><div class="ttdeci">ConstIterator RTBegin(ConstIterator begin, CoordinateType rt, ConstIterator end) const </div><div class="ttdoc">Binary search for peak range begin. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:526</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a93f1c9f620403aec160d98e83e125502"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a93f1c9f620403aec160d98e83e125502">OpenMS::MSChromatogram::sortByIntensity</a></div><div class="ttdeci">void sortByIntensity(bool reverse=false)</div><div class="ttdoc">Lexicographically sorts the peaks by their intensity. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:271</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aaf11666dc886ac34473cf47b83f5a99c"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aaf11666dc886ac34473cf47b83f5a99c">OpenMS::MSChromatogram::MSChromatogram</a></div><div class="ttdeci">MSChromatogram(const MSChromatogram &source)</div><div class="ttdoc">Copy constructor. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:133</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ad0a6b1c07f0cc642bdf2024adc39c436"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ad0a6b1c07f0cc642bdf2024adc39c436">OpenMS::MSChromatogram::~MSChromatogram</a></div><div class="ttdeci">virtual ~MSChromatogram()</div><div class="ttdoc">Destructor. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:145</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a331497623e3e2d20d09207c5c4055717"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a331497623e3e2d20d09207c5c4055717">OpenMS::MSChromatogram::StringDataArrays</a></div><div class="ttdeci">std::vector< StringDataArray > StringDataArrays</div><div class="ttdoc">String data array vector type. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_1_1FloatDataArray_html"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram_1_1FloatDataArray.html">OpenMS::MSChromatogram::FloatDataArray</a></div><div class="ttdoc">Float data array class. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a451f36bed614c68ef9ac9577d6ce6a96"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a451f36bed614c68ef9ac9577d6ce6a96">OpenMS::MSChromatogram::operator=</a></div><div class="ttdeci">MSChromatogram & operator=(const MSChromatogram &source)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:149</div></div>
<div class="ttc" id="classOpenMS_1_1Product_html_adf13f6e49cf05563669b4481aaced5f2"><div class="ttname"><a href="classOpenMS_1_1Product.html#adf13f6e49cf05563669b4481aaced5f2">OpenMS::Product::getMZ</a></div><div class="ttdeci">DoubleReal getMZ() const </div><div class="ttdoc">returns the target m/z </div></div>
<div class="ttc" id="structOpenMS_1_1MSChromatogram_1_1MZLess_html"><div class="ttname"><a href="structOpenMS_1_1MSChromatogram_1_1MZLess.html">OpenMS::MSChromatogram::MZLess</a></div><div class="ttdoc">Comparator for the retention time. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:81</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html">OpenMS::PersistentObject</a></div><div class="ttdoc">Base class for all persistent objects. </div><div class="ttdef"><b>Definition:</b> PersistentObject.h:52</div></div>
<div class="ttc" id="MetaInfoDescription_8h_html"><div class="ttname"><a href="MetaInfoDescription_8h.html">MetaInfoDescription.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_ad808bc540f1cba8049a23bec074eed64"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">OpenMS::RangeManager::operator=</a></div><div class="ttdeci">RangeManager & operator=(const RangeManager &rhs)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html_aede71eb0c7f871a5415bb4757f8faec5"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html#aede71eb0c7f871a5415bb4757f8faec5">OpenMS::PersistentObject::operator=</a></div><div class="ttdeci">PersistentObject & operator=(const PersistentObject &rhs)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_aaa3d5efb96ade4c8ce2c8e216a73dcd1"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">OpenMS::RangeManager< 1 >::clearRanges</a></div><div class="ttdeci">void clearRanges()</div><div class="ttdoc">Resets the ranges. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:140</div></div>
<div class="ttc" id="RangeManager_8h_html"><div class="ttname"><a href="RangeManager_8h.html">RangeManager.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_adf13f6e49cf05563669b4481aaced5f2"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#adf13f6e49cf05563669b4481aaced5f2">OpenMS::MSChromatogram::getMZ</a></div><div class="ttdeci">DoubleReal getMZ() const </div><div class="ttdoc">returns the mz of the product entry, makes sense especially for MRM scans </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:208</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ae2fc906f686ab141e88c57655afd1774"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ae2fc906f686ab141e88c57655afd1774">OpenMS::MSChromatogram::FloatDataArrays</a></div><div class="ttdeci">std::vector< FloatDataArray > FloatDataArrays</div><div class="ttdoc">Float data array vector type. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:100</div></div>
<div class="ttc" id="ChromatogramPeak_8h_html"><div class="ttname"><a href="ChromatogramPeak_8h.html">ChromatogramPeak.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_ad315e04a79cddc41e8e12d92086e46d6"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#ad315e04a79cddc41e8e12d92086e46d6">OpenMS::ChromatogramSettings::getProduct</a></div><div class="ttdeci">const Product & getProduct() const </div><div class="ttdoc">returns a const reference to the products </div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a698f324c36214cc6ffb30a4868a88b2b"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">OpenMS::MSChromatogram::PeakType</a></div><div class="ttdeci">PeakT PeakType</div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html_ad88b5f0f6c90153e67e86b0b761e54c4"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html#ad88b5f0f6c90153e67e86b0b761e54c4">OpenMS::PersistentObject::clearId</a></div><div class="ttdeci">void clearId(bool deep=true)</div><div class="ttdoc">Clears the persistence id. </div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html">OpenMS::ChromatogramSettings</a></div><div class="ttdoc">Representation of chromatogram settings, e.g. SRM/MRM chromatograms. </div><div class="ttdef"><b>Definition:</b> ChromatogramSettings.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a8b3a6d95f436cb3c0e8f57e526f32ed1"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a8b3a6d95f436cb3c0e8f57e526f32ed1">OpenMS::MSChromatogram::getIntegerDataArrays</a></div><div class="ttdeci">const IntegerDataArrays & getIntegerDataArrays() const </div><div class="ttdoc">Returns a const reference to the integer meta data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:251</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a8aff4d53c079645e5de45c1cb099a81d"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a8aff4d53c079645e5de45c1cb099a81d">OpenMS::MSChromatogram::string_data_arrays_</a></div><div class="ttdeci">StringDataArrays string_data_arrays_</div><div class="ttdoc">String data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:594</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a51a3ad04d9563aaf0db6f849c0b5e52c"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a51a3ad04d9563aaf0db6f849c0b5e52c">OpenMS::MSChromatogram::ReverseIterator</a></div><div class="ttdeci">ContainerType::reverse_iterator ReverseIterator</div><div class="ttdoc">Mutable reverse iterator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a754a1ac4301eaac76b8afd5aa0eb7c18"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a754a1ac4301eaac76b8afd5aa0eb7c18">OpenMS::MSChromatogram::operator!=</a></div><div class="ttdeci">bool operator!=(const MSChromatogram &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:179</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a86f7b200260209865e730a2e4fcaa628"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a86f7b200260209865e730a2e4fcaa628">OpenMS::MSChromatogram::sortByPosition</a></div><div class="ttdeci">void sortByPosition()</div><div class="ttdoc">Lexicographically sorts the peaks by their position. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:349</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a9cff9094e9541446e2b4d479ff8bc9f5"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a9cff9094e9541446e2b4d479ff8bc9f5">OpenMS::MSChromatogram::integer_data_arrays_</a></div><div class="ttdeci">IntegerDataArrays integer_data_arrays_</div><div class="ttdoc">Intager data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:597</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a04180872c118391b344405c6a5ce1a72"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a04180872c118391b344405c6a5ce1a72">OpenMS::MSChromatogram::RTEnd</a></div><div class="ttdeci">ConstIterator RTEnd(ConstIterator begin, CoordinateType rt, ConstIterator end) const </div><div class="ttdoc">Binary search for peak range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:552</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a61a738aaacdceb2692d545836198fb94"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a61a738aaacdceb2692d545836198fb94">OpenMS::MSChromatogram::ConstReverseIterator</a></div><div class="ttdeci">ContainerType::const_reverse_iterator ConstReverseIterator</div><div class="ttdoc">Non-mutable reverse iterator. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a46d25a1d56b8ab56e84b8bd0c7581e8f"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">OpenMS::MSChromatogram::name_</a></div><div class="ttdeci">String name_</div><div class="ttdoc">Name. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:588</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_ada8ccbfae8ad9120b791b43000fc6dda"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#ada8ccbfae8ad9120b791b43000fc6dda">OpenMS::MSChromatogram::isSorted</a></div><div class="ttdeci">bool isSorted() const </div><div class="ttdoc">Checks if all peaks are sorted with respect to ascending RT. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:407</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_a1b01c1c3871aad142893e20d17afc340"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#a1b01c1c3871aad142893e20d17afc340">OpenMS::RangeManager< 1 >::updateRanges_</a></div><div class="ttdeci">void updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end)</div><div class="ttdoc">Updates the range using data points in the iterator range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:155</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_a57213d8c30f9d5d0d6fb3fb472d21f05"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#a57213d8c30f9d5d0d6fb3fb472d21f05">OpenMS::MSChromatogram::getFloatDataArrays</a></div><div class="ttdeci">const FloatDataArrays & getFloatDataArrays() const </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:227</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_aca192a8c89187e4311eacc9daa073c7b"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#aca192a8c89187e4311eacc9daa073c7b">OpenMS::MSChromatogram::clearChildIds_</a></div><div class="ttdeci">virtual void clearChildIds_()</div><div class="ttdoc">Clears the persistence id of all sub-objects. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:584</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html">OpenMS::RangeManager</a></div><div class="ttdoc">Handles the managment of a position and intensity range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:48</div></div>
<div class="ttc" id="structOpenMS_1_1PairComparatorFirstElement_html"><div class="ttname"><a href="structOpenMS_1_1PairComparatorFirstElement.html">OpenMS::PairComparatorFirstElement</a></div><div class="ttdoc">Class for comparison of std::pair using first ONLY e.g. for use with std::sort. </div><div class="ttdef"><b>Definition:</b> ComparatorUtils.h:326</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_af072fc84225ae927f7527f208ea86cbd"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#af072fc84225ae927f7527f208ea86cbd">OpenMS::MSChromatogram::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data)</div><div class="ttdoc">Clears all data and meta data. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:564</div></div>
<div class="ttc" id="PersistentObject_8h_html"><div class="ttname"><a href="PersistentObject_8h.html">PersistentObject.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_a6c3c38d51ece74ac60d509570e51cb8f"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#a6c3c38d51ece74ac60d509570e51cb8f">OpenMS::ChromatogramSettings::operator=</a></div><div class="ttdeci">ChromatogramSettings & operator=(const ChromatogramSettings &source)</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html_af276a4b8e9dcc0f2dd65c75d03312a89"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html#af276a4b8e9dcc0f2dd65c75d03312a89">OpenMS::MSChromatogram::getIntegerDataArrays</a></div><div class="ttdeci">IntegerDataArrays & getIntegerDataArrays()</div><div class="ttdoc">Returns a mutable reference to the integer meta data arrays. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:257</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_1_1StringDataArray_html"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram_1_1StringDataArray.html">OpenMS::MSChromatogram::StringDataArray</a></div><div class="ttdoc">String data array class. </div><div class="ttdef"><b>Definition:</b> MSChromatogram.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_a9b96ebee455860352d61365db52073dc"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#a9b96ebee455860352d61365db52073dc">OpenMS::ChromatogramSettings::operator==</a></div><div class="ttdeci">bool operator==(const ChromatogramSettings &rhs) const </div><div class="ttdoc">Equality operator. </div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_a8ead37c592b183dea7a55de90ddcff39"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#a8ead37c592b183dea7a55de90ddcff39">OpenMS::ChromatogramSettings::ChromatogramSettings</a></div><div class="ttdeci">ChromatogramSettings()</div><div class="ttdoc">Constructor. </div></div>
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