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<a href="MSExperiment_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Stephan Aiche$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Marc Sturm $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_KERNEL_MSEXPERIMENT_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_MSEXPERIMENT_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="MSSpectrum_8h.html">OpenMS/KERNEL/MSSpectrum.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="MSChromatogram_8h.html">OpenMS/KERNEL/MSChromatogram.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ExperimentalSettings_8h.html">OpenMS/METADATA/ExperimentalSettings.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="DRange_8h.html">OpenMS/DATASTRUCTURES/DRange.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="PersistentObject_8h.html">OpenMS/FORMAT/DB/PersistentObject.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="Exception_8h.html">OpenMS/CONCEPT/Exception.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="AreaIterator_8h.html">OpenMS/KERNEL/AreaIterator.h</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <algorithm></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <limits></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">class </span>Peak1D;</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> PeakT = Peak1D, <span class="keyword">typename</span> ChromatogramPeakT = ChromatogramPeak></div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html"> 68</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> :</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><2>,</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a>,</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  {</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">typedef</span> <a class="code" href="classPeakT.html">PeakT</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a>;</div>
<div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a5de1db69904b11c688819feb60559d98"> 81</a></span>  <span class="keyword">typedef</span> ChromatogramPeakT <a class="code" href="classOpenMS_1_1MSExperiment.html#a5de1db69904b11c688819feb60559d98">ChromatogramPeakType</a>;</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a167f63a2d1a578a83eb07c33a25a8f43"> 83</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1DRange.html">DRange<2></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a167f63a2d1a578a83eb07c33a25a8f43">AreaType</a>;</div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a181486a43da338e31f089df7661f50bb"> 85</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classdouble.html">PeakType::CoordinateType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a>;</div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a221361082f641c3fccc58e9bc66aeee1"> 87</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1Peak1D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">PeakType::IntensityType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a>;</div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a035217389fa12c02d059ddfb29c459e1"> 89</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager<2></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a035217389fa12c02d059ddfb29c459e1">RangeManagerType</a>;</div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e"> 91</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<PeakType></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">SpectrumType</a>;</div>
<div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a5bfc152a01835ee1a12f01241b4eda50"> 93</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a5bfc152a01835ee1a12f01241b4eda50">ChromatogramType</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a08f107173406c1c71a7127eebef82515"> 95</a></span>  <span class="keyword">typedef</span> std::vector<SpectrumType> <a class="code" href="classOpenMS_1_1MSExperiment.html#a08f107173406c1c71a7127eebef82515">Base</a>;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> std::vector<SpectrumType>::iterator <a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a>;</div>
<div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0"> 103</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> std::vector<SpectrumType>::const_iterator <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a>;</div>
<div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a9aa8e2a39a1767b456c47000d2ae1a56"> 105</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">Internal::AreaIterator<PeakT, PeakT &, PeakT *, Iterator, typename SpectrumType::Iterator></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9aa8e2a39a1767b456c47000d2ae1a56">AreaIterator</a>;</div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a0dd6c8130427f887b79db48cfd58181a"> 107</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">Internal::AreaIterator<const PeakT, const PeakT &, const PeakT *, ConstIterator, typename SpectrumType::ConstIterator></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a0dd6c8130427f887b79db48cfd58181a">ConstAreaIterator</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="comment">// Attention: these refer to the spectra vector only!</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a758d02a5183e542558cd2f7ad65c683c"> 113</a></span> <span class="comment"></span> <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::value_type <a class="code" href="classOpenMS_1_1MSExperiment.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a>; </div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a"> 114</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::iterator <a class="code" href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a>; </div>
<div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae8163da75e575365fc14d7dbf3ea74de"> 115</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_iterator <a class="code" href="classOpenMS_1_1MSExperiment.html#ae8163da75e575365fc14d7dbf3ea74de">const_iterator</a>; </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a9d78a687cf2a391198bb3cbc08bc06cb"> 117</a></span>  <span class="keyword">inline</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9d78a687cf2a391198bb3cbc08bc06cb">size</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.size(); </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  }</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ac2bc824d6ff2633ec34793c9e918d479"> 122</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bc824d6ff2633ec34793c9e918d479">resize</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> s)</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  {</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.resize(s); </div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  }</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ac6e61de369e994009e36f344f99c15ad"> 127</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ac6e61de369e994009e36f344f99c15ad">empty</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.empty(); </div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  }</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#af5e67d26823ec12e91434f4e74faa9d1"> 132</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#af5e67d26823ec12e91434f4e74faa9d1">reserve</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> s)</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  {</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.reserve(s); </div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  }</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a name="l00137"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#af7dcf81ab729a368193aa0bbe5ac116e"> 137</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a>& <a class="code" href="classOpenMS_1_1MSExperiment.html#af7dcf81ab729a368193aa0bbe5ac116e">operator[] </a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> n)</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  {</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[n];</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  }</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a2aa0b6f1da05f0ef6eddefa06f858e1b"> 142</a></span>  <span class="keyword">inline</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a>& <a class="code" href="classOpenMS_1_1MSExperiment.html#af7dcf81ab729a368193aa0bbe5ac116e">operator[] </a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> n)<span class="keyword"> const</span></div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[n];</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  }</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00147"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a2387033802383edbdc95f9bbb12a707e"> 147</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a2387033802383edbdc95f9bbb12a707e">begin</a>() </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  {</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin();</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  }</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aeb8a08dab209e7d8bd94ea796e8055e7"> 152</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#aeb8a08dab209e7d8bd94ea796e8055e7">begin</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin();</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  }</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> </div>
<div class="line"><a name="l00157"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ab45dae688fc5d8983727abffa4389003"> 157</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#ab45dae688fc5d8983727abffa4389003">end</a>() </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  {</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end();</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  }</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> </div>
<div class="line"><a name="l00162"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#afd94c820b193c151ddbaae99185a24f4"> 162</a></span>  <span class="keyword">inline</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#afd94c820b193c151ddbaae99185a24f4">end</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end();</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  }</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="comment">// Aliases / chromatograms</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ad9c7f3105519d825fa5f0ec8c9b94148"> 169</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ad9c7f3105519d825fa5f0ec8c9b94148">reserveSpaceSpectra</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> s)</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  {</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.reserve(s); </div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  }</div>
<div class="line"><a name="l00173"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a4de1763c39f89f224521ec0d7a804589"> 173</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a4de1763c39f89f224521ec0d7a804589">reserveSpaceChromatograms</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> s)</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  {</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.reserve(s); </div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00179"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a77b14e3bc3d80b04c6e8c0253fc79ce2"> 179</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a77b14e3bc3d80b04c6e8c0253fc79ce2">MSExperiment</a>() :</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManagerType</a>(),</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a>(),</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a>(),</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>(),</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>(0)</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  {}</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> </div>
<div class="line"><a name="l00188"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#abad159f926fca4e34260f1331a5847c1"> 188</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#abad159f926fca4e34260f1331a5847c1">MSExperiment</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & source) :</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManagerType</a>(source),</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a>(source),</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a>(source),</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>(source.<a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>),</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>(source.<a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>),</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>(source.<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>),</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>(source.<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>)</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  {}</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a60095ad674632c73d7d08ebc1e2b05f5"> 199</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#a60095ad674632c73d7d08ebc1e2b05f5">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & source)</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  {</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordflow">if</span> (&source == <span class="keyword">this</span>) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManagerType::operator=</a>(source);</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">ExperimentalSettings::operator=</a>(source);</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html#aede71eb0c7f871a5415bb4757f8faec5">PersistentObject::operator=</a>(source);</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a> = source.<a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a> = source.<a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>;</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a> = source.<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a> = source.<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>;</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="comment">//no need to copy the alloc?!</span></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="comment">//alloc_</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> </div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  }</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00219"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae9b04b8c759e9fbe9079c8bfa3f85ef8"> 219</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#ae9b04b8c759e9fbe9079c8bfa3f85ef8">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a> & source)</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  {</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">ExperimentalSettings::operator=</a>(source);</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  }</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00226"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae004afe606d6054f9d0c9139e3a126ce"> 226</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ae004afe606d6054f9d0c9139e3a126ce">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1ExperimentalSettings.html#a650e4912e273a3e22f09f3b760d914b6">ExperimentalSettings::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a> == rhs.<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a> && </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a> == rhs.<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>;</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  }</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span> </div>
<div class="line"><a name="l00234"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a78b38fac5fb7ca9480209042d49605ba"> 234</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a78b38fac5fb7ca9480209042d49605ba">operator!=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordflow">return</span> !(<a class="code" href="classOpenMS_1_1MSExperiment.html#ae004afe606d6054f9d0c9139e3a126ce">operator==</a>(rhs));</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> </div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keyword">template</span> <<span class="keyword">class</span> Container></div>
<div class="line"><a name="l00248"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a39cd3877560af16732f709348724f53a"> 248</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a39cd3877560af16732f709348724f53a">get2DData</a>(Container & cont)<span class="keyword"> const</span></div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> Base::const_iterator spec = <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(); spec != <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(); ++spec)</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  {</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="keywordflow">if</span> (spec->getMSLevel() != 1)</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  {</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  }</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> SpectrumType::const_iterator it = spec->begin(); it != spec->end(); ++it)</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  {</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  cont.push_back(<span class="keyword">typename</span> Container::value_type());</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  cont.back().setRT(spec->getRT());</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  cont.back().setMZ(it->getMZ());</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  cont.back().setIntensity(it->getIntensity());</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  }</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  }</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span> </div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keyword">template</span> <<span class="keyword">class</span> Container></div>
<div class="line"><a name="l00275"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a62fd7dbc7f6e5cc960d5db28524512f8"> 275</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a62fd7dbc7f6e5cc960d5db28524512f8">set2DData</a>(<span class="keyword">const</span> Container & cont)</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a> * spectrum = 0;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="comment">// If the container is empty, nothing will happen</span></div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keywordflow">if</span> (cont.empty()) <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> </div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keyword">typename</span> <a class="code" href="classdouble.html">PeakType::CoordinateType</a> current_rt = -(std::numeric_limits<typename PeakType::CoordinateType>::max)();</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span> </div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> Container::const_iterator iter = cont.begin(); iter != cont.end(); ++iter)</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  {</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  <span class="comment">// check if the retention time time has changed</span></div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordflow">if</span> (current_rt != iter->getRT() || spectrum == 0)</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  {</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="keywordflow">if</span> (current_rt > iter->getRT())</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  {</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1Precondition.html">Exception::Precondition</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, <span class="stringliteral">"Input container is not sorted!"</span>);</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  }</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  current_rt = iter->getRT();</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.insert(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">SpectrumType</a>());</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  spectrum = &(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.back());</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  spectrum-><a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(current_rt);</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  spectrum-><a class="code" href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">setMSLevel</a>(1);</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  }</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span> </div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <span class="comment">// create temporary peak and insert it into spectrum</span></div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  spectrum->insert(spectrum->end(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a698f324c36214cc6ffb30a4868a88b2b">PeakType</a>());</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  spectrum->back().setIntensity(iter->getIntensity());</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  spectrum->back().setPosition(iter->getMZ());</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  }</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  }</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span> </div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span> </div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span> </div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">AreaIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a878abca09cb3f6810e634b72b99007eb">areaBegin</a>(<a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> min_rt, <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> max_rt, <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> min_mz, <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> max_mz)</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  {</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(min_rt <= max_rt, <span class="stringliteral">"Swapped RT range boundaries!"</span>)</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(min_mz <= max_mz, "Swapped MZ range boundaries!")</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(this-><a class="code" href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598">isSorted</a>(true), "Experiment is not sorted by RT and m/z! Using <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">AreaIterator</a> will give invalid results!")</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="comment">//std::cout << "areaBegin: " << min_rt << " " << max_rt << " " << min_mz << " " << max_mz << std::endl;</span></div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  return <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">AreaIterator</a>(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.<a class="code" href="classOpenMS_1_1MSExperiment.html#a2387033802383edbdc95f9bbb12a707e">begin</a>(), <a class="code" href="classOpenMS_1_1MSExperiment.html#adb2f0f3e10754ca4dc7be677f15689a3">RTBegin</a>(min_rt), <a class="code" href="classOpenMS_1_1MSExperiment.html#aecc2b466c4b527df363f5b1287a5e646">RTEnd</a>(max_rt), min_mz, max_mz);</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  }</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span> </div>
<div class="line"><a name="l00321"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#afb936fe46d35a9d29e36552a68c1ef2a"> 321</a></span>  <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">AreaIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#afb936fe46d35a9d29e36552a68c1ef2a">areaEnd</a>()</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  {</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9aa8e2a39a1767b456c47000d2ae1a56">AreaIterator</a>();</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  }</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span> </div>
<div class="line"><a name="l00327"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aa23ed32415e6667bd2737377c24c16fb"> 327</a></span>  <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">ConstAreaIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#aa23ed32415e6667bd2737377c24c16fb">areaBeginConst</a>(<a class="code" href="classdouble.html">CoordinateType</a> min_rt, <a class="code" href="classdouble.html">CoordinateType</a> max_rt, <a class="code" href="classdouble.html">CoordinateType</a> min_mz, <a class="code" href="classdouble.html">CoordinateType</a> max_mz)<span class="keyword"> const</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(min_rt <= max_rt, <span class="stringliteral">"Swapped RT range boundaries!"</span>)</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(min_mz <= max_mz, <span class="stringliteral">"Swapped MZ range boundaries!"</span>)</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(this-><a class="code" href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598">isSorted</a>(<span class="keyword">true</span>), <span class="stringliteral">"Experiment is not sorted by RT and m/z! Using ConstAreaIterator will give invalid results!"</span>)</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">//std::cout << "areaBeginConst: " << min_rt << " " << max_rt << " " << min_mz << " " << max_mz << std::endl;</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a0dd6c8130427f887b79db48cfd58181a">ConstAreaIterator</a>(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#adb2f0f3e10754ca4dc7be677f15689a3">RTBegin</a>(min_rt), <a class="code" href="classOpenMS_1_1MSExperiment.html#aecc2b466c4b527df363f5b1287a5e646">RTEnd</a>(max_rt), min_mz, max_mz);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  }</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> </div>
<div class="line"><a name="l00337"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a5f9d4faff212e67330d60f958f0ce4bc"> 337</a></span>  <a class="code" href="classOpenMS_1_1Internal_1_1AreaIterator.html">ConstAreaIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a5f9d4faff212e67330d60f958f0ce4bc">areaEndConst</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a0dd6c8130427f887b79db48cfd58181a">ConstAreaIterator</a>();</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  }</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#adb2f0f3e10754ca4dc7be677f15689a3"> 349</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#adb2f0f3e10754ca4dc7be677f15689a3">RTBegin</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)<span class="keyword"> const</span></div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a> s;</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  s.<a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(rt);</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="keywordflow">return</span> lower_bound(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), s, <span class="keyword">typename</span> SpectrumType::RTLess());</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00363"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aecc2b466c4b527df363f5b1287a5e646"> 363</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#aecc2b466c4b527df363f5b1287a5e646">RTEnd</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)<span class="keyword"> const</span></div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a> s;</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  s.<a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(rt);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <span class="keywordflow">return</span> upper_bound(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), s, <span class="keyword">typename</span> SpectrumType::RTLess());</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  }</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span> </div>
<div class="line"><a name="l00375"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aaa28bff92147612bdfc8ac6892395c93"> 375</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#aaa28bff92147612bdfc8ac6892395c93">RTBegin</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  {</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a> s;</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  s.<a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(rt);</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="keywordflow">return</span> lower_bound(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), s, <span class="keyword">typename</span> SpectrumType::RTLess());</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  }</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> </div>
<div class="line"><a name="l00387"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a5f9b950ce9dd8beba1afb32cc934b567"> 387</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a5f9b950ce9dd8beba1afb32cc934b567">RTEnd</a>(<a class="code" href="classdouble.html">CoordinateType</a> rt)</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  {</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">SpectrumType</a> s;</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  s.<a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(rt);</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  <span class="keywordflow">return</span> upper_bound(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), s, <span class="keyword">typename</span> SpectrumType::RTLess());</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  }</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span> </div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <span class="comment">// Docu in base class</span></div>
<div class="line"><a name="l00403"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd"> 403</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd">updateRanges</a>()</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  {</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd">updateRanges</a>(-1);</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  }</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> </div>
<div class="line"><a name="l00413"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aa23cd56c00752986da68f5aaccedeeed"> 413</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#aa23cd56c00752986da68f5aaccedeeed">updateRanges</a>(<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> ms_level)</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  {</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <span class="comment">//clear MS levels</span></div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.clear();</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span> </div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="comment">//reset mz/rt/int range</span></div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="comment">//reset point count</span></div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a> = 0;</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span> </div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="comment">//empty</span></div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.empty() && <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.empty())</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  {</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  }</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span> </div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  <span class="comment">//update</span></div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> Base::iterator it = <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(); it != <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(); ++it)</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  {</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keywordflow">if</span> (ms_level < <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>(0) || <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>(it->getMSLevel()) == ms_level)</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  {</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="comment">//ms levels</span></div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keywordflow">if</span> (std::find(<a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.end(), it->getMSLevel()) == <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.end())</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  {</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.push_back(it->getMSLevel());</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  }</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> </div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="comment">// calculate size</span></div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a> += it->size();</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span> </div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <span class="comment">//rt</span></div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  <span class="keywordflow">if</span> (it->getRT() < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinX(it->getRT());</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  <span class="keywordflow">if</span> (it->getRT() > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxX(it->getRT());</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span> </div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="comment">//do not update mz and int when the spectrum is empty</span></div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keywordflow">if</span> (it->size() == 0) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span> </div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  it->updateRanges();</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span> </div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <span class="comment">//mz</span></div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keywordflow">if</span> (it->getMin()[0] < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinY(it->getMin()[0]);</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keywordflow">if</span> (it->getMax()[0] > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxY(it->getMax()[0]);</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> </div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  <span class="comment">//int</span></div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  <span class="keywordflow">if</span> (it->getMinInt() < <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a343fad5097e3d189e29278d79d616b5d">minX</a>()) <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.setMinX(it->getMinInt());</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  <span class="keywordflow">if</span> (it->getMaxInt() > <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ae68cfbd569be85968353aba0118df447">maxX</a>()) <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.setMaxX(it->getMaxInt());</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span> </div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  }</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  <span class="comment">// for MS level = 1 we extend the range for all the MS2 precursors</span></div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <span class="keywordflow">if</span> (ms_level == 1 && it->getMSLevel() == 2)</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  {</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  <span class="keywordflow">if</span> (!it->getPrecursors().empty())</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  {</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <a class="code" href="classdouble.html">DoubleReal</a> pc_rt = it->getRT();</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  <span class="keywordflow">if</span> (pc_rt < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinX(pc_rt);</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  <span class="keywordflow">if</span> (pc_rt > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxX(pc_rt);</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <a class="code" href="classdouble.html">DoubleReal</a> pc_mz = it->getPrecursors()[0].getMZ();</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  <span class="keywordflow">if</span> (pc_mz < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinY(pc_mz);</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  <span class="keywordflow">if</span> (pc_mz > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxY(pc_mz);</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  }</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span> </div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  }</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span> </div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  }</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  std::sort(<a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.end());</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span> </div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span> </div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> </div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span> </div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  <span class="keywordflow">if</span> (this-><a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.empty())</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  {</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  }</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span> </div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <span class="comment">//TODO CHROM update intensity, m/z and RT according to chromatograms as well! (done????)</span></div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span> </div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> std::vector<ChromatogramType>::iterator it = <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.begin(); it != <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.end(); ++it)</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  {</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span> </div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  <span class="comment">// ignore TICs and ECs (as these are usually positioned at 0 and therefor lead to a large white margin in plots if included)</span></div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  <span class="keywordflow">if</span> (it->getChromatogramType() == <a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a68c34f5f5adf5049a53084716add11bda9761ce23aa0bea120a7d581477316953">ChromatogramSettings::TOTAL_ION_CURRENT_CHROMATOGRAM</a> ||</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  it->getChromatogramType() == <a class="code" href="classOpenMS_1_1ChromatogramSettings.html#a68c34f5f5adf5049a53084716add11bda37ef0f7f2bed3939a8c3e135067b8705">ChromatogramSettings::EMISSION_CHROMATOGRAM</a>)</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  {</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  }</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span> </div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  <span class="comment">// update MZ</span></div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  <span class="keywordflow">if</span> (it->getMZ() < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinY(it->getMZ());</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  <span class="keywordflow">if</span> (it->getMZ() > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxY()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxY(it->getMZ());</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span> </div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  <span class="comment">// do not update RT and in if the specturm is empty</span></div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <span class="keywordflow">if</span> (it->size() == 0) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span> </div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a> += it->size();</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span> </div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  it->updateRanges();</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span> </div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  <span class="comment">// RT</span></div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="keywordflow">if</span> (it->getMin()[0] < <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMinX(it->getMin()[0]);</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordflow">if</span> (it->getMax()[0] > <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxX()) <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.setMaxX(it->getMax()[0]);</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span> </div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="comment">// int</span></div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <span class="keywordflow">if</span> (it->getMinInt() < <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a343fad5097e3d189e29278d79d616b5d">minX</a>()) <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.setMinX(it->getMinInt());</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  <span class="keywordflow">if</span> (it->getMaxInt() > <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ae68cfbd569be85968353aba0118df447">maxX</a>()) <a class="code" href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">RangeManagerType::int_range_</a>.setMaxX(it->getMaxInt());</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  }</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  }</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a name="l00521"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a9d8aab759e082ef93475344071fb7809"> 521</a></span>  <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9d8aab759e082ef93475344071fb7809">getMinMZ</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minPosition()[1];</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  }</div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span> </div>
<div class="line"><a name="l00527"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a87d8ffa067f5ee283997ac69b197234f"> 527</a></span>  <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a87d8ffa067f5ee283997ac69b197234f">getMaxMZ</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxPosition()[1];</div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  }</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span> </div>
<div class="line"><a name="l00533"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a9244f3b9aefde24a9b246a8396c3bb84"> 533</a></span>  <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9244f3b9aefde24a9b246a8396c3bb84">getMinRT</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.minPosition()[0];</div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  }</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span> </div>
<div class="line"><a name="l00539"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#af67f955c87166e64d9361815dc3760b5"> 539</a></span>  <a class="code" href="classdouble.html">CoordinateType</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#af67f955c87166e64d9361815dc3760b5">getMaxRT</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>.maxPosition()[0];</div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  }</div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span> </div>
<div class="line"><a name="l00549"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a18ecdc4784f2b340944659a1847557e9"> 549</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DRange.html">AreaType</a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#a18ecdc4784f2b340944659a1847557e9">getDataRange</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManagerType::pos_range_</a>;</div>
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  }</div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span> </div>
<div class="line"><a name="l00555"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398"> 555</a></span>  <a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">getSize</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>;</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  }</div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span> </div>
<div class="line"><a name="l00561"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#adbc1e31b95b2364ef4b3b1ba94b0aa8d"> 561</a></span>  <span class="keyword">const</span> std::vector<UInt> & <a class="code" href="classOpenMS_1_1MSExperiment.html#adbc1e31b95b2364ef4b3b1ba94b0aa8d">getMSLevels</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>;</div>
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span>  }</div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span> </div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span> </div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span> </div>
<div class="line"><a name="l00575"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ac518a80bea4f92fd700b235a12146658"> 575</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ac518a80bea4f92fd700b235a12146658">sortSpectra</a>(<span class="keywordtype">bool</span> sort_mz = <span class="keyword">true</span>)</div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  {</div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  std::sort(<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(), <span class="keyword">typename</span> SpectrumType::RTLess());</div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span> </div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span>  <span class="keywordflow">if</span> (sort_mz)</div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span>  {</div>
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span>  <span class="comment">// sort each spectrum by m/z</span></div>
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">Iterator</a> iter = <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(); iter != <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(); ++iter)</div>
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span>  {</div>
<div class="line"><a name="l00584"></a><span class="lineno"> 584</span>  iter->sortByPosition();</div>
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  }</div>
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span>  }</div>
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  }</div>
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span> </div>
<div class="line"><a name="l00594"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aa679772c8c6b65183102bc220ebe7870"> 594</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#aa679772c8c6b65183102bc220ebe7870">sortChromatograms</a>(<span class="keywordtype">bool</span> sort_rt = <span class="keyword">true</span>)</div>
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span>  {</div>
<div class="line"><a name="l00596"></a><span class="lineno"> 596</span>  <span class="comment">// sort the chromatograms according to their product m/z</span></div>
<div class="line"><a name="l00597"></a><span class="lineno"> 597</span>  std::sort(<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.begin(), <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.end(), <span class="keyword">typename</span> ChromatogramType::MZLess());</div>
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span> </div>
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span>  <span class="keywordflow">if</span> (sort_rt)</div>
<div class="line"><a name="l00600"></a><span class="lineno"> 600</span>  {</div>
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> std::vector<ChromatogramType>::iterator it = <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.begin(); it != <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.end(); ++it)</div>
<div class="line"><a name="l00602"></a><span class="lineno"> 602</span>  {</div>
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span>  it->sortByPosition();</div>
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span>  }</div>
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span>  }</div>
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  }</div>
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span> </div>
<div class="line"><a name="l00613"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598"> 613</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598">isSorted</a>(<span class="keywordtype">bool</span> check_mz = <span class="keyword">true</span>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span>  <span class="comment">//check RT positions</span></div>
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 1; i < <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.size(); ++i)</div>
<div class="line"><a name="l00617"></a><span class="lineno"> 617</span>  {</div>
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span>  <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i - 1].getRT() > <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getRT()) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a name="l00619"></a><span class="lineno"> 619</span>  }</div>
<div class="line"><a name="l00620"></a><span class="lineno"> 620</span>  <span class="comment">//check spectra</span></div>
<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  <span class="keywordflow">if</span> (check_mz)</div>
<div class="line"><a name="l00622"></a><span class="lineno"> 622</span>  {</div>
<div class="line"><a name="l00623"></a><span class="lineno"> 623</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.size(); ++i)</div>
<div class="line"><a name="l00624"></a><span class="lineno"> 624</span>  {</div>
<div class="line"><a name="l00625"></a><span class="lineno"> 625</span>  <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].<a class="code" href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598">isSorted</a>()) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a name="l00626"></a><span class="lineno"> 626</span>  }</div>
<div class="line"><a name="l00627"></a><span class="lineno"> 627</span>  }</div>
<div class="line"><a name="l00628"></a><span class="lineno"> 628</span>  <span class="comment">// TODO CHROM</span></div>
<div class="line"><a name="l00629"></a><span class="lineno"> 629</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a name="l00630"></a><span class="lineno"> 630</span>  }</div>
<div class="line"><a name="l00631"></a><span class="lineno"> 631</span> </div>
<div class="line"><a name="l00633"></a><span class="lineno"> 633</span> </div>
<div class="line"><a name="l00635"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ad20897c5c8bd47f5d4005989bead0e55"> 635</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ad20897c5c8bd47f5d4005989bead0e55">reset</a>()</div>
<div class="line"><a name="l00636"></a><span class="lineno"> 636</span>  {</div>
<div class="line"><a name="l00637"></a><span class="lineno"> 637</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.clear(); <span class="comment">//remove data</span></div>
<div class="line"><a name="l00638"></a><span class="lineno"> 638</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">RangeManagerType::clearRanges</a>(); <span class="comment">//reset range manager</span></div>
<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">ExperimentalSettings::operator=</a>(<a class="code" href="classOpenMS_1_1ExperimentalSettings.html#a2d81d988f41678e20ddcf7682553e29f">ExperimentalSettings</a>()); <span class="comment">//reset meta info</span></div>
<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  }</div>
<div class="line"><a name="l00641"></a><span class="lineno"> 641</span> </div>
<div class="line"><a name="l00647"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a30581229b2239b7f01ad77aa8cec118c"> 647</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a30581229b2239b7f01ad77aa8cec118c">clearMetaDataArrays</a>()</div>
<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  {</div>
<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  <span class="keywordtype">bool</span> meta_present = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00650"></a><span class="lineno"> 650</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.size(); ++i)</div>
<div class="line"><a name="l00651"></a><span class="lineno"> 651</span>  {</div>
<div class="line"><a name="l00652"></a><span class="lineno"> 652</span>  <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getFloatDataArrays().size() != 0 || <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getIntegerDataArrays().size() != 0 || <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getStringDataArrays().size() != 0)</div>
<div class="line"><a name="l00653"></a><span class="lineno"> 653</span>  {</div>
<div class="line"><a name="l00654"></a><span class="lineno"> 654</span>  meta_present = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00655"></a><span class="lineno"> 655</span>  }</div>
<div class="line"><a name="l00656"></a><span class="lineno"> 656</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getStringDataArrays().clear();</div>
<div class="line"><a name="l00657"></a><span class="lineno"> 657</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getIntegerDataArrays().clear();</div>
<div class="line"><a name="l00658"></a><span class="lineno"> 658</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].getFloatDataArrays().clear();</div>
<div class="line"><a name="l00659"></a><span class="lineno"> 659</span>  }</div>
<div class="line"><a name="l00660"></a><span class="lineno"> 660</span>  <span class="keywordflow">return</span> meta_present;</div>
<div class="line"><a name="l00661"></a><span class="lineno"> 661</span>  }</div>
<div class="line"><a name="l00662"></a><span class="lineno"> 662</span> </div>
<div class="line"><a name="l00664"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33"> 664</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33">getExperimentalSettings</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00665"></a><span class="lineno"> 665</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00666"></a><span class="lineno"> 666</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00667"></a><span class="lineno"> 667</span>  }</div>
<div class="line"><a name="l00668"></a><span class="lineno"> 668</span> </div>
<div class="line"><a name="l00670"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a4c61e437da9328fe32bfa0ab529d429c"> 670</a></span>  <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#a4c61e437da9328fe32bfa0ab529d429c">getExperimentalSettings</a>()</div>
<div class="line"><a name="l00671"></a><span class="lineno"> 671</span>  {</div>
<div class="line"><a name="l00672"></a><span class="lineno"> 672</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00673"></a><span class="lineno"> 673</span>  }</div>
<div class="line"><a name="l00674"></a><span class="lineno"> 674</span> </div>
<div class="line"><a name="l00680"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a65f612b2c985382e4e8946bc60da8f75"> 680</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a65f612b2c985382e4e8946bc60da8f75">getPrecursorSpectrum</a>(<a class="code" href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">ConstIterator</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00681"></a><span class="lineno"> 681</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00682"></a><span class="lineno"> 682</span>  <span class="keywordflow">if</span> (iterator == <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end() || iterator == <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin())</div>
<div class="line"><a name="l00683"></a><span class="lineno"> 683</span>  {</div>
<div class="line"><a name="l00684"></a><span class="lineno"> 684</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end();</div>
<div class="line"><a name="l00685"></a><span class="lineno"> 685</span>  }</div>
<div class="line"><a name="l00686"></a><span class="lineno"> 686</span>  <a class="code" href="classunsigned_01int.html">UInt</a> ms_level = iterator->getMSLevel();</div>
<div class="line"><a name="l00687"></a><span class="lineno"> 687</span>  <span class="keywordflow">do</span></div>
<div class="line"><a name="l00688"></a><span class="lineno"> 688</span>  {</div>
<div class="line"><a name="l00689"></a><span class="lineno"> 689</span>  --<a class="code" href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a>;</div>
<div class="line"><a name="l00690"></a><span class="lineno"> 690</span>  <span class="keywordflow">if</span> (iterator->getMSLevel() < ms_level)</div>
<div class="line"><a name="l00691"></a><span class="lineno"> 691</span>  {</div>
<div class="line"><a name="l00692"></a><span class="lineno"> 692</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a>;</div>
<div class="line"><a name="l00693"></a><span class="lineno"> 693</span>  }</div>
<div class="line"><a name="l00694"></a><span class="lineno"> 694</span>  }</div>
<div class="line"><a name="l00695"></a><span class="lineno"> 695</span>  <span class="keywordflow">while</span> (iterator != <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin());</div>
<div class="line"><a name="l00696"></a><span class="lineno"> 696</span> </div>
<div class="line"><a name="l00697"></a><span class="lineno"> 697</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end();</div>
<div class="line"><a name="l00698"></a><span class="lineno"> 698</span>  }</div>
<div class="line"><a name="l00699"></a><span class="lineno"> 699</span> </div>
<div class="line"><a name="l00701"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a1acb534122a4490f537bd523ec7e8c74"> 701</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a1acb534122a4490f537bd523ec7e8c74">swap</a>(<a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> & from)</div>
<div class="line"><a name="l00702"></a><span class="lineno"> 702</span>  {</div>
<div class="line"><a name="l00703"></a><span class="lineno"> 703</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a> tmp;</div>
<div class="line"><a name="l00704"></a><span class="lineno"> 704</span> </div>
<div class="line"><a name="l00705"></a><span class="lineno"> 705</span>  <span class="comment">//swap range information</span></div>
<div class="line"><a name="l00706"></a><span class="lineno"> 706</span>  tmp.RangeManagerType::operator=(* this);</div>
<div class="line"><a name="l00707"></a><span class="lineno"> 707</span>  this-><a class="code" href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">RangeManagerType::operator=</a>(from);</div>
<div class="line"><a name="l00708"></a><span class="lineno"> 708</span>  from.RangeManagerType::operator=(tmp);</div>
<div class="line"><a name="l00709"></a><span class="lineno"> 709</span> </div>
<div class="line"><a name="l00710"></a><span class="lineno"> 710</span>  <span class="comment">//swap experimental settings</span></div>
<div class="line"><a name="l00711"></a><span class="lineno"> 711</span>  tmp.ExperimentalSettings::operator=(* this);</div>
<div class="line"><a name="l00712"></a><span class="lineno"> 712</span>  this-><a class="code" href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">ExperimentalSettings::operator=</a>(from);</div>
<div class="line"><a name="l00713"></a><span class="lineno"> 713</span>  from.ExperimentalSettings::operator=(tmp);</div>
<div class="line"><a name="l00714"></a><span class="lineno"> 714</span> </div>
<div class="line"><a name="l00715"></a><span class="lineno"> 715</span>  <span class="comment">//swap persistent object</span></div>
<div class="line"><a name="l00716"></a><span class="lineno"> 716</span>  tmp.PersistentObject::operator=(* this);</div>
<div class="line"><a name="l00717"></a><span class="lineno"> 717</span>  this-><a class="code" href="classOpenMS_1_1PersistentObject.html#aede71eb0c7f871a5415bb4757f8faec5">PersistentObject::operator=</a>(from);</div>
<div class="line"><a name="l00718"></a><span class="lineno"> 718</span>  from.PersistentObject::operator=(tmp);</div>
<div class="line"><a name="l00719"></a><span class="lineno"> 719</span> </div>
<div class="line"><a name="l00720"></a><span class="lineno"> 720</span>  <span class="comment">// swap chromatograms</span></div>
<div class="line"><a name="l00721"></a><span class="lineno"> 721</span>  std::swap(<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>, from.<a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>);</div>
<div class="line"><a name="l00722"></a><span class="lineno"> 722</span> </div>
<div class="line"><a name="l00723"></a><span class="lineno"> 723</span>  <span class="comment">//swap peaks</span></div>
<div class="line"><a name="l00724"></a><span class="lineno"> 724</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.swap(from.<a class="code" href="classOpenMS_1_1MSExperiment.html#a0aaed6b7672a2808c67006e604708c76">getSpectra</a>());</div>
<div class="line"><a name="l00725"></a><span class="lineno"> 725</span> </div>
<div class="line"><a name="l00726"></a><span class="lineno"> 726</span>  <span class="comment">//swap remaining members</span></div>
<div class="line"><a name="l00727"></a><span class="lineno"> 727</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.swap(from.<a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>);</div>
<div class="line"><a name="l00728"></a><span class="lineno"> 728</span>  std::swap(<a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>, from.<a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>);</div>
<div class="line"><a name="l00729"></a><span class="lineno"> 729</span>  }</div>
<div class="line"><a name="l00730"></a><span class="lineno"> 730</span> </div>
<div class="line"><a name="l00732"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a41f3cfaba60bdd362dc5f4c0494e0a23"> 732</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a41f3cfaba60bdd362dc5f4c0494e0a23">setSpectra</a>(<span class="keyword">const</span> std::vector<<a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<PeakT></a> > & spectra)</div>
<div class="line"><a name="l00733"></a><span class="lineno"> 733</span>  {</div>
<div class="line"><a name="l00734"></a><span class="lineno"> 734</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a> = spectra;</div>
<div class="line"><a name="l00735"></a><span class="lineno"> 735</span>  }</div>
<div class="line"><a name="l00736"></a><span class="lineno"> 736</span> </div>
<div class="line"><a name="l00738"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae9dafbb74a1a4c430ceef03e25ab8e10"> 738</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ae9dafbb74a1a4c430ceef03e25ab8e10">addSpectrum</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<PeakT></a> & spectrum)</div>
<div class="line"><a name="l00739"></a><span class="lineno"> 739</span>  {</div>
<div class="line"><a name="l00740"></a><span class="lineno"> 740</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.push_back(spectrum);</div>
<div class="line"><a name="l00741"></a><span class="lineno"> 741</span>  }</div>
<div class="line"><a name="l00742"></a><span class="lineno"> 742</span> </div>
<div class="line"><a name="l00744"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a0aaed6b7672a2808c67006e604708c76"> 744</a></span>  <span class="keyword">const</span> std::vector<MSSpectrum<PeakT> > & <a class="code" href="classOpenMS_1_1MSExperiment.html#a0aaed6b7672a2808c67006e604708c76">getSpectra</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00745"></a><span class="lineno"> 745</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00746"></a><span class="lineno"> 746</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>;</div>
<div class="line"><a name="l00747"></a><span class="lineno"> 747</span>  }</div>
<div class="line"><a name="l00748"></a><span class="lineno"> 748</span> </div>
<div class="line"><a name="l00750"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a4ea10711f169cfa40e8475bb4d226514"> 750</a></span>  std::vector<MSSpectrum<PeakT> > & <a class="code" href="classOpenMS_1_1MSExperiment.html#a4ea10711f169cfa40e8475bb4d226514">getSpectra</a>() </div>
<div class="line"><a name="l00751"></a><span class="lineno"> 751</span>  {</div>
<div class="line"><a name="l00752"></a><span class="lineno"> 752</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>;</div>
<div class="line"><a name="l00753"></a><span class="lineno"> 753</span>  }</div>
<div class="line"><a name="l00754"></a><span class="lineno"> 754</span> </div>
<div class="line"><a name="l00756"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a4c105ad43f3c61a53997af8ba28720e2"> 756</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a4c105ad43f3c61a53997af8ba28720e2">setChromatograms</a>(<span class="keyword">const</span> std::vector<<a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> > & chromatograms)</div>
<div class="line"><a name="l00757"></a><span class="lineno"> 757</span>  {</div>
<div class="line"><a name="l00758"></a><span class="lineno"> 758</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a> = chromatograms;</div>
<div class="line"><a name="l00759"></a><span class="lineno"> 759</span>  }</div>
<div class="line"><a name="l00760"></a><span class="lineno"> 760</span> </div>
<div class="line"><a name="l00762"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a37eb544fb451472f4679589fee735df4"> 762</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#a37eb544fb451472f4679589fee735df4">addChromatogram</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> & chromatogram)</div>
<div class="line"><a name="l00763"></a><span class="lineno"> 763</span>  {</div>
<div class="line"><a name="l00764"></a><span class="lineno"> 764</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.push_back(chromatogram);</div>
<div class="line"><a name="l00765"></a><span class="lineno"> 765</span>  }</div>
<div class="line"><a name="l00766"></a><span class="lineno"> 766</span> </div>
<div class="line"><a name="l00768"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a02fccfed86a20f8bd0f6b98c23fadb2e"> 768</a></span>  <span class="keyword">const</span> std::vector<MSChromatogram<ChromatogramPeakType> > & <a class="code" href="classOpenMS_1_1MSExperiment.html#a02fccfed86a20f8bd0f6b98c23fadb2e">getChromatograms</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00769"></a><span class="lineno"> 769</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00770"></a><span class="lineno"> 770</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>;</div>
<div class="line"><a name="l00771"></a><span class="lineno"> 771</span>  }</div>
<div class="line"><a name="l00772"></a><span class="lineno"> 772</span> </div>
<div class="line"><a name="l00774"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ae9be60694b267dc26b3e79a125646e25"> 774</a></span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> & <a class="code" href="classOpenMS_1_1MSExperiment.html#ae9be60694b267dc26b3e79a125646e25">getChromatogram</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <span class="keywordtype">id</span>) </div>
<div class="line"><a name="l00775"></a><span class="lineno"> 775</span>  {</div>
<div class="line"><a name="l00776"></a><span class="lineno"> 776</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>[id];</div>
<div class="line"><a name="l00777"></a><span class="lineno"> 777</span>  }</div>
<div class="line"><a name="l00778"></a><span class="lineno"> 778</span> </div>
<div class="line"><a name="l00780"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ab9c3bac03f15bef0516ef45b9bc02c31"> 780</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> <a class="code" href="classOpenMS_1_1MSExperiment.html#ab9c3bac03f15bef0516ef45b9bc02c31">getTIC</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00781"></a><span class="lineno"> 781</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00782"></a><span class="lineno"> 782</span>  <span class="comment">// The TIC is (re)calculated from the MS1 spectra. Even if MSExperiment does not contain a TIC chromatogram explicitly, it can be reported.</span></div>
<div class="line"><a name="l00783"></a><span class="lineno"> 783</span>  <a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakType></a> TIC;</div>
<div class="line"><a name="l00784"></a><span class="lineno"> 784</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> Base::const_iterator spec_it = <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.begin(); spec_it != <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.end(); ++spec_it)</div>
<div class="line"><a name="l00785"></a><span class="lineno"> 785</span>  {</div>
<div class="line"><a name="l00786"></a><span class="lineno"> 786</span>  <span class="keywordflow">if</span> (spec_it->getMSLevel() == 1)</div>
<div class="line"><a name="l00787"></a><span class="lineno"> 787</span>  {</div>
<div class="line"><a name="l00788"></a><span class="lineno"> 788</span>  <a class="code" href="classdouble.html">DoubleReal</a> totalIntensity = 0;</div>
<div class="line"><a name="l00789"></a><span class="lineno"> 789</span>  <span class="comment">// sum intensities of a spectrum</span></div>
<div class="line"><a name="l00790"></a><span class="lineno"> 790</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> SpectrumType::const_iterator peak_it = spec_it->begin(); peak_it != spec_it->end(); ++peak_it)</div>
<div class="line"><a name="l00791"></a><span class="lineno"> 791</span>  {</div>
<div class="line"><a name="l00792"></a><span class="lineno"> 792</span>  totalIntensity += peak_it->getIntensity();</div>
<div class="line"><a name="l00793"></a><span class="lineno"> 793</span>  }</div>
<div class="line"><a name="l00794"></a><span class="lineno"> 794</span>  <span class="comment">// fill chromatogram</span></div>
<div class="line"><a name="l00795"></a><span class="lineno"> 795</span>  <a class="code" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeakType</a> peak;</div>
<div class="line"><a name="l00796"></a><span class="lineno"> 796</span>  peak.<a class="code" href="classOpenMS_1_1ChromatogramPeak.html#a98fe0c3fba1788864d35d8ef6159459f">setRT</a>(spec_it->getRT());</div>
<div class="line"><a name="l00797"></a><span class="lineno"> 797</span>  peak.<a class="code" href="classOpenMS_1_1ChromatogramPeak.html#ab875c2479c6cd2a0189e4684bfa4f97d">setIntensity</a>(totalIntensity);</div>
<div class="line"><a name="l00798"></a><span class="lineno"> 798</span>  TIC.push_back(peak);</div>
<div class="line"><a name="l00799"></a><span class="lineno"> 799</span>  }</div>
<div class="line"><a name="l00800"></a><span class="lineno"> 800</span>  }</div>
<div class="line"><a name="l00801"></a><span class="lineno"> 801</span>  <span class="keywordflow">return</span> TIC;</div>
<div class="line"><a name="l00802"></a><span class="lineno"> 802</span>  }</div>
<div class="line"><a name="l00803"></a><span class="lineno"> 803</span> </div>
<div class="line"><a name="l00809"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#af072fc84225ae927f7527f208ea86cbd"> 809</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#af072fc84225ae927f7527f208ea86cbd">clear</a>(<span class="keywordtype">bool</span> clear_meta_data)</div>
<div class="line"><a name="l00810"></a><span class="lineno"> 810</span>  {</div>
<div class="line"><a name="l00811"></a><span class="lineno"> 811</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.clear();</div>
<div class="line"><a name="l00812"></a><span class="lineno"> 812</span> </div>
<div class="line"><a name="l00813"></a><span class="lineno"> 813</span>  <span class="keywordflow">if</span> (clear_meta_data)</div>
<div class="line"><a name="l00814"></a><span class="lineno"> 814</span>  {</div>
<div class="line"><a name="l00815"></a><span class="lineno"> 815</span>  <a class="code" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">clearRanges</a>();</div>
<div class="line"><a name="l00816"></a><span class="lineno"> 816</span>  <a class="code" href="classOpenMS_1_1PersistentObject.html#ad88b5f0f6c90153e67e86b0b761e54c4">clearId</a>();</div>
<div class="line"><a name="l00817"></a><span class="lineno"> 817</span>  this-><a class="code" href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">ExperimentalSettings::operator=</a>(<a class="code" href="classOpenMS_1_1ExperimentalSettings.html#a2d81d988f41678e20ddcf7682553e29f">ExperimentalSettings</a>()); <span class="comment">// no "clear" method</span></div>
<div class="line"><a name="l00818"></a><span class="lineno"> 818</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>.clear();</div>
<div class="line"><a name="l00819"></a><span class="lineno"> 819</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>.clear();</div>
<div class="line"><a name="l00820"></a><span class="lineno"> 820</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a> = 0;</div>
<div class="line"><a name="l00821"></a><span class="lineno"> 821</span>  }</div>
<div class="line"><a name="l00822"></a><span class="lineno"> 822</span>  }</div>
<div class="line"><a name="l00823"></a><span class="lineno"> 823</span> </div>
<div class="line"><a name="l00824"></a><span class="lineno"> 824</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00825"></a><span class="lineno"> 825</span> </div>
<div class="line"><a name="l00826"></a><span class="lineno"> 826</span>  <span class="comment">// Docu in base class</span></div>
<div class="line"><a name="l00827"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#aca192a8c89187e4311eacc9daa073c7b"> 827</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#aca192a8c89187e4311eacc9daa073c7b">clearChildIds_</a>()</div>
<div class="line"><a name="l00828"></a><span class="lineno"> 828</span>  {</div>
<div class="line"><a name="l00829"></a><span class="lineno"> 829</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>.size(); ++i)</div>
<div class="line"><a name="l00830"></a><span class="lineno"> 830</span>  {</div>
<div class="line"><a name="l00831"></a><span class="lineno"> 831</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>[i].clearId(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00832"></a><span class="lineno"> 832</span>  }</div>
<div class="line"><a name="l00833"></a><span class="lineno"> 833</span>  }</div>
<div class="line"><a name="l00834"></a><span class="lineno"> 834</span> </div>
<div class="line"><a name="l00836"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a"> 836</a></span>  std::vector<UInt> <a class="code" href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">ms_levels_</a>;</div>
<div class="line"><a name="l00838"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c"> 838</a></span>  <a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <a class="code" href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">total_size_</a>;</div>
<div class="line"><a name="l00839"></a><span class="lineno"> 839</span> </div>
<div class="line"><a name="l00841"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94"> 841</a></span>  std::vector<MSChromatogram<ChromatogramPeakType> > <a class="code" href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">chromatograms_</a>;</div>
<div class="line"><a name="l00842"></a><span class="lineno"> 842</span> </div>
<div class="line"><a name="l00844"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd"> 844</a></span>  std::vector<SpectrumType> <a class="code" href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">spectra_</a>;</div>
<div class="line"><a name="l00845"></a><span class="lineno"> 845</span>  };</div>
<div class="line"><a name="l00846"></a><span class="lineno"> 846</span> </div>
<div class="line"><a name="l00847"></a><span class="lineno"> 847</span> </div>
<div class="line"><a name="l00849"></a><span class="lineno"> 849</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> PeakT, <span class="keyword">typename</span> ChromatogramPeakT></div>
<div class="line"><a name="l00850"></a><span class="lineno"><a class="line" href="namespaceOpenMS.html#aa075d940e1820aebc5b207976486a683"> 850</a></span>  std::ostream & operator<<(std::ostream & os, const MSExperiment<PeakT, ChromatogramPeakT> & exp)</div>
<div class="line"><a name="l00851"></a><span class="lineno"> 851</span>  {</div>
<div class="line"><a name="l00852"></a><span class="lineno"> 852</span>  os << <span class="stringliteral">"-- MSEXPERIMENT BEGIN --"</span> << std::endl;</div>
<div class="line"><a name="l00853"></a><span class="lineno"> 853</span> </div>
<div class="line"><a name="l00854"></a><span class="lineno"> 854</span>  <span class="comment">//experimental settings</span></div>
<div class="line"><a name="l00855"></a><span class="lineno"> 855</span>  os << static_cast<const ExperimentalSettings &>(exp);</div>
<div class="line"><a name="l00856"></a><span class="lineno"> 856</span> </div>
<div class="line"><a name="l00857"></a><span class="lineno"> 857</span>  <span class="comment">//spectra</span></div>
<div class="line"><a name="l00858"></a><span class="lineno"> 858</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1MSExperiment.html#ae8163da75e575365fc14d7dbf3ea74de">MSExperiment<PeakT>::const_iterator</a> it = exp.begin(); it != exp.end(); ++it)</div>
<div class="line"><a name="l00859"></a><span class="lineno"> 859</span>  {</div>
<div class="line"><a name="l00860"></a><span class="lineno"> 860</span>  os << *it;</div>
<div class="line"><a name="l00861"></a><span class="lineno"> 861</span>  }</div>
<div class="line"><a name="l00862"></a><span class="lineno"> 862</span> </div>
<div class="line"><a name="l00863"></a><span class="lineno"> 863</span>  <span class="comment">//chromatograms</span></div>
<div class="line"><a name="l00864"></a><span class="lineno"> 864</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> std::vector<<a class="code" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram<ChromatogramPeakT></a> >::<a class="code" href="classOpenMS_1_1MSExperiment.html#ae8163da75e575365fc14d7dbf3ea74de">const_iterator</a> it = exp.getChromatograms().begin(); it != exp.getChromatograms().end(); ++it)</div>
<div class="line"><a name="l00865"></a><span class="lineno"> 865</span>  {</div>
<div class="line"><a name="l00866"></a><span class="lineno"> 866</span>  os << *it;</div>
<div class="line"><a name="l00867"></a><span class="lineno"> 867</span>  }</div>
<div class="line"><a name="l00868"></a><span class="lineno"> 868</span> </div>
<div class="line"><a name="l00869"></a><span class="lineno"> 869</span>  os << <span class="stringliteral">"-- MSEXPERIMENT END --"</span> << std::endl;</div>
<div class="line"><a name="l00870"></a><span class="lineno"> 870</span> </div>
<div class="line"><a name="l00871"></a><span class="lineno"> 871</span>  <span class="keywordflow">return</span> os;</div>
<div class="line"><a name="l00872"></a><span class="lineno"> 872</span>  }</div>
<div class="line"><a name="l00873"></a><span class="lineno"> 873</span> </div>
<div class="line"><a name="l00874"></a><span class="lineno"> 874</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00875"></a><span class="lineno"> 875</span> </div>
<div class="line"><a name="l00876"></a><span class="lineno"> 876</span> <span class="preprocessor">#endif // OPENMS_KERNEL_MSEXPERIMENT_H</span></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramPeak_html_a98fe0c3fba1788864d35d8ef6159459f"><div class="ttname"><a href="classOpenMS_1_1ChromatogramPeak.html#a98fe0c3fba1788864d35d8ef6159459f">OpenMS::ChromatogramPeak::setRT</a></div><div class="ttdeci">void setRT(CoordinateType rt)</div><div class="ttdoc">Mutable access to RT. </div><div class="ttdef"><b>Definition:</b> ChromatogramPeak.h:117</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a066042ae14211da37d4fa66d466bfa3e"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">OpenMS::MSExperiment::SpectrumType</a></div><div class="ttdeci">MSSpectrum< PeakType > SpectrumType</div><div class="ttdoc">Spectrum Type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a9aa8e2a39a1767b456c47000d2ae1a56"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a9aa8e2a39a1767b456c47000d2ae1a56">OpenMS::MSExperiment::AreaIterator</a></div><div class="ttdeci">Internal::AreaIterator< PeakT, PeakT &, PeakT *, Iterator, typename SpectrumType::Iterator > AreaIterator</div><div class="ttdoc">Mutable area iterator type (for traversal of a rectangular subset of the peaks) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:105</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a39cd3877560af16732f709348724f53a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a39cd3877560af16732f709348724f53a">OpenMS::MSExperiment::get2DData</a></div><div class="ttdeci">void get2DData(Container &cont) const </div><div class="ttdoc">Reads out a 2D Spectrum. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:248</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a4de1763c39f89f224521ec0d7a804589"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a4de1763c39f89f224521ec0d7a804589">OpenMS::MSExperiment::reserveSpaceChromatograms</a></div><div class="ttdeci">void reserveSpaceChromatograms(Size s)</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:173</div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html_a650e4912e273a3e22f09f3b760d914b6"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html#a650e4912e273a3e22f09f3b760d914b6">OpenMS::ExperimentalSettings::operator==</a></div><div class="ttdeci">bool operator==(const ExperimentalSettings &rhs) const </div><div class="ttdoc">Equality operator. </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ad20897c5c8bd47f5d4005989bead0e55"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ad20897c5c8bd47f5d4005989bead0e55">OpenMS::MSExperiment::reset</a></div><div class="ttdeci">void reset()</div><div class="ttdoc">Resets all internal values. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:635</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_ab5f4f0d11b0ceff54d8664d1cce7fd8a"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">OpenMS::RangeManager< 2 >::pos_range_</a></div><div class="ttdeci">PositionRangeType pos_range_</div><div class="ttdoc">Position range (D-dimensional) </div><div class="ttdef"><b>Definition:</b> RangeManager.h:151</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a9d78a687cf2a391198bb3cbc08bc06cb"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a9d78a687cf2a391198bb3cbc08bc06cb">OpenMS::MSExperiment::size</a></div><div class="ttdeci">Size size() const </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:117</div></div>
<div class="ttc" id="classPeakT_html"><div class="ttname"><a href="classPeakT.html">PeakT</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a3049e1d8765313f967f17885188d767c"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a3049e1d8765313f967f17885188d767c">OpenMS::MSExperiment::Iterator</a></div><div class="ttdeci">std::vector< SpectrumType >::iterator Iterator</div><div class="ttdoc">Mutable iterator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:101</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae004afe606d6054f9d0c9139e3a126ce"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae004afe606d6054f9d0c9139e3a126ce">OpenMS::MSExperiment::operator==</a></div><div class="ttdeci">bool operator==(const MSExperiment &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:226</div></div>
<div class="ttc" id="classOpenMS_1_1MSChromatogram_html"><div class="ttname"><a href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram< ChromatogramPeakType ></a></div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_a68c34f5f5adf5049a53084716add11bda9761ce23aa0bea120a7d581477316953"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#a68c34f5f5adf5049a53084716add11bda9761ce23aa0bea120a7d581477316953">OpenMS::ChromatogramSettings::TOTAL_ION_CURRENT_CHROMATOGRAM</a></div><div class="ttdef"><b>Definition:</b> ChromatogramSettings.h:70</div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_ae68cfbd569be85968353aba0118df447"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ae68cfbd569be85968353aba0118df447">OpenMS::Internal::DIntervalBase::maxX</a></div><div class="ttdeci">CoordinateType maxX() const </div><div class="ttdoc">Accessor for min_ coordinate maximum. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:252</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a758d02a5183e542558cd2f7ad65c683c"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a758d02a5183e542558cd2f7ad65c683c">OpenMS::MSExperiment::value_type</a></div><div class="ttdeci">Base::value_type value_type</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:113</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ac2bb84635b95ec5bff6954f28375cd94"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ac2bb84635b95ec5bff6954f28375cd94">OpenMS::MSExperiment::chromatograms_</a></div><div class="ttdeci">std::vector< MSChromatogram< ChromatogramPeakType > > chromatograms_</div><div class="ttdoc">chromatograms </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:841</div></div>
<div class="ttc" id="group__Conditions_html_ga45a74ea28109e7e1ed992fbd2ee97778"><div class="ttname"><a href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a></div><div class="ttdeci">#define OPENMS_PRECONDITION(condition, message)</div><div class="ttdoc">Precondition macro. </div><div class="ttdef"><b>Definition:</b> Macros.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a5f9b950ce9dd8beba1afb32cc934b567"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a5f9b950ce9dd8beba1afb32cc934b567">OpenMS::MSExperiment::RTEnd</a></div><div class="ttdeci">Iterator RTEnd(CoordinateType rt)</div><div class="ttdoc">Fast search for spectrum range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:387</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a30581229b2239b7f01ad77aa8cec118c"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a30581229b2239b7f01ad77aa8cec118c">OpenMS::MSExperiment::clearMetaDataArrays</a></div><div class="ttdeci">bool clearMetaDataArrays()</div><div class="ttdoc">Clears the meta data arrays of all contained spectra (float, integer and string arrays) ...</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:647</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a77b14e3bc3d80b04c6e8c0253fc79ce2"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a77b14e3bc3d80b04c6e8c0253fc79ce2">OpenMS::MSExperiment::MSExperiment</a></div><div class="ttdeci">MSExperiment()</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:179</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a5de1db69904b11c688819feb60559d98"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a5de1db69904b11c688819feb60559d98">OpenMS::MSExperiment::ChromatogramPeakType</a></div><div class="ttdeci">ChromatogramPeakT ChromatogramPeakType</div><div class="ttdoc">Chromatogram peak type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:81</div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1AreaIterator_html"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1AreaIterator.html">OpenMS::Internal::AreaIterator</a></div><div class="ttdoc">Forward iterator for an area of peaks in an experiment. </div><div class="ttdef"><b>Definition:</b> AreaIterator.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a2387033802383edbdc95f9bbb12a707e"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a2387033802383edbdc95f9bbb12a707e">OpenMS::MSExperiment::begin</a></div><div class="ttdeci">Iterator begin()</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:147</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ac518a80bea4f92fd700b235a12146658"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ac518a80bea4f92fd700b235a12146658">OpenMS::MSExperiment::sortSpectra</a></div><div class="ttdeci">void sortSpectra(bool sort_mz=true)</div><div class="ttdoc">Sorts the data points by retention time. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:575</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae8163da75e575365fc14d7dbf3ea74de"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae8163da75e575365fc14d7dbf3ea74de">OpenMS::MSExperiment::const_iterator</a></div><div class="ttdeci">Base::const_iterator const_iterator</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:115</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ac2bc824d6ff2633ec34793c9e918d479"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ac2bc824d6ff2633ec34793c9e918d479">OpenMS::MSExperiment::resize</a></div><div class="ttdeci">void resize(Size s)</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:122</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a221361082f641c3fccc58e9bc66aeee1"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a221361082f641c3fccc58e9bc66aeee1">OpenMS::MSExperiment::IntensityType</a></div><div class="ttdeci">PeakType::IntensityType IntensityType</div><div class="ttdoc">Intenstiy type of peaks. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:87</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a1acb534122a4490f537bd523ec7e8c74"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a1acb534122a4490f537bd523ec7e8c74">OpenMS::MSExperiment::swap</a></div><div class="ttdeci">void swap(MSExperiment &from)</div><div class="ttdoc">Swaps the content of this map with the content of from. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:701</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a87d8ffa067f5ee283997ac69b197234f"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a87d8ffa067f5ee283997ac69b197234f">OpenMS::MSExperiment::getMaxMZ</a></div><div class="ttdeci">CoordinateType getMaxMZ() const </div><div class="ttdoc">returns the maximal m/z value </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:527</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aecc2b466c4b527df363f5b1287a5e646"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aecc2b466c4b527df363f5b1287a5e646">OpenMS::MSExperiment::RTEnd</a></div><div class="ttdeci">ConstIterator RTEnd(CoordinateType rt) const </div><div class="ttdoc">Fast search for spectrum range end (returns the past-the-end iterator) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:363</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1Precondition_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1Precondition.html">OpenMS::Exception::Precondition</a></div><div class="ttdoc">Precondition failed exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ab9c3bac03f15bef0516ef45b9bc02c31"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ab9c3bac03f15bef0516ef45b9bc02c31">OpenMS::MSExperiment::getTIC</a></div><div class="ttdeci">const MSChromatogram< ChromatogramPeakType > getTIC() const </div><div class="ttdoc">returns the total ion chromatogram (TIC) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:780</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a37eb544fb451472f4679589fee735df4"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a37eb544fb451472f4679589fee735df4">OpenMS::MSExperiment::addChromatogram</a></div><div class="ttdeci">void addChromatogram(const MSChromatogram< ChromatogramPeakType > &chromatogram)</div><div class="ttdoc">adds a chromatogram to the list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:762</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a5f9d4faff212e67330d60f958f0ce4bc"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a5f9d4faff212e67330d60f958f0ce4bc">OpenMS::MSExperiment::areaEndConst</a></div><div class="ttdeci">ConstAreaIterator areaEndConst() const </div><div class="ttdoc">Returns an non-mutable invalid area iterator marking the end of an area. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:337</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a9d8aab759e082ef93475344071fb7809"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a9d8aab759e082ef93475344071fb7809">OpenMS::MSExperiment::getMinMZ</a></div><div class="ttdeci">CoordinateType getMinMZ() const </div><div class="ttdoc">returns the minimal m/z value </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:521</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a9244f3b9aefde24a9b246a8396c3bb84"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a9244f3b9aefde24a9b246a8396c3bb84">OpenMS::MSExperiment::getMinRT</a></div><div class="ttdeci">CoordinateType getMinRT() const </div><div class="ttdoc">returns the minimal retention time value </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:533</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_af7dcf81ab729a368193aa0bbe5ac116e"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#af7dcf81ab729a368193aa0bbe5ac116e">OpenMS::MSExperiment::operator[]</a></div><div class="ttdeci">SpectrumType & operator[](Size n)</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:137</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a035217389fa12c02d059ddfb29c459e1"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a035217389fa12c02d059ddfb29c459e1">OpenMS::MSExperiment::RangeManagerType</a></div><div class="ttdeci">RangeManager< 2 > RangeManagerType</div><div class="ttdoc">RangeManager type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ab45dae688fc5d8983727abffa4389003"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ab45dae688fc5d8983727abffa4389003">OpenMS::MSExperiment::end</a></div><div class="ttdeci">Iterator end()</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:157</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_adb2f0f3e10754ca4dc7be677f15689a3"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#adb2f0f3e10754ca4dc7be677f15689a3">OpenMS::MSExperiment::RTBegin</a></div><div class="ttdeci">ConstIterator RTBegin(CoordinateType rt) const </div><div class="ttdoc">Fast search for spectrum range begin. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:349</div></div>
<div class="ttc" id="MSSpectrum_8h_html"><div class="ttname"><a href="MSSpectrum_8h.html">MSSpectrum.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a0bc3019d7d2ff6c73f261836bff0af3a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a0bc3019d7d2ff6c73f261836bff0af3a">OpenMS::MSExperiment::iterator</a></div><div class="ttdeci">Base::iterator iterator</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a5bfc152a01835ee1a12f01241b4eda50"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a5bfc152a01835ee1a12f01241b4eda50">OpenMS::MSExperiment::ChromatogramType</a></div><div class="ttdeci">MSChromatogram< ChromatogramPeakType > ChromatogramType</div><div class="ttdoc">Chromatogram type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:93</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum< PeakType ></a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aa679772c8c6b65183102bc220ebe7870"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aa679772c8c6b65183102bc220ebe7870">OpenMS::MSExperiment::sortChromatograms</a></div><div class="ttdeci">void sortChromatograms(bool sort_rt=true)</div><div class="ttdoc">Sorts the data points of the chromatograms by m/z. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:594</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aa23cd56c00752986da68f5aaccedeeed"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aa23cd56c00752986da68f5aaccedeeed">OpenMS::MSExperiment::updateRanges</a></div><div class="ttdeci">void updateRanges(Int ms_level)</div><div class="ttdoc">Updates the m/z, intensity, retention time and MS level ranges of all spectra with a certain ms level...</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:413</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aa23ed32415e6667bd2737377c24c16fb"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aa23ed32415e6667bd2737377c24c16fb">OpenMS::MSExperiment::areaBeginConst</a></div><div class="ttdeci">ConstAreaIterator areaBeginConst(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) const </div><div class="ttdoc">Returns a non-mutable area iterator for area. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:327</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html">OpenMS::PersistentObject</a></div><div class="ttdoc">Base class for all persistent objects. </div><div class="ttdef"><b>Definition:</b> PersistentObject.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_af5e67d26823ec12e91434f4e74faa9d1"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#af5e67d26823ec12e91434f4e74faa9d1">OpenMS::MSExperiment::reserve</a></div><div class="ttdeci">void reserve(Size s)</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:132</div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_a343fad5097e3d189e29278d79d616b5d"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a343fad5097e3d189e29278d79d616b5d">OpenMS::Internal::DIntervalBase::minX</a></div><div class="ttdeci">CoordinateType minX() const </div><div class="ttdoc">Accessor for min_ coordinate minimum. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:240</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae9be60694b267dc26b3e79a125646e25"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae9be60694b267dc26b3e79a125646e25">OpenMS::MSExperiment::getChromatogram</a></div><div class="ttdeci">MSChromatogram< ChromatogramPeakType > & getChromatogram(Size id)</div><div class="ttdoc">returns a single chromatogram </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:774</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_ad808bc540f1cba8049a23bec074eed64"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#ad808bc540f1cba8049a23bec074eed64">OpenMS::RangeManager< 2 >::operator=</a></div><div class="ttdeci">RangeManager & operator=(const RangeManager &rhs)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:77</div></div>
<div class="ttc" id="DRange_8h_html"><div class="ttname"><a href="DRange_8h.html">DRange.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Peak1D_html_a4a8c5b2adc05e9ff96a007385bfe9b47"><div class="ttname"><a href="classOpenMS_1_1Peak1D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">OpenMS::Peak1D::IntensityType</a></div><div class="ttdeci">Real IntensityType</div><div class="ttdoc">Intensity type. </div><div class="ttdef"><b>Definition:</b> Peak1D.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html_aede71eb0c7f871a5415bb4757f8faec5"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html#aede71eb0c7f871a5415bb4757f8faec5">OpenMS::PersistentObject::operator=</a></div><div class="ttdeci">PersistentObject & operator=(const PersistentObject &rhs)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a97a188fab675068e314d4058d9bb5c33"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33">OpenMS::MSExperiment::getExperimentalSettings</a></div><div class="ttdeci">const ExperimentalSettings & getExperimentalSettings() const </div><div class="ttdoc">returns the meta information of this experiment (const access) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:664</div></div>
<div class="ttc" id="AreaIterator_8h_html"><div class="ttname"><a href="AreaIterator_8h.html">AreaIterator.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_aaa3d5efb96ade4c8ce2c8e216a73dcd1"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">OpenMS::RangeManager< 2 >::clearRanges</a></div><div class="ttdeci">void clearRanges()</div><div class="ttdoc">Resets the ranges. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_a24f081fe74bbbf773533ad19e96d8358"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">OpenMS::MSSpectrum::setMSLevel</a></div><div class="ttdeci">void setMSLevel(UInt ms_level)</div><div class="ttdoc">Sets the MS level. </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:237</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_afd94c820b193c151ddbaae99185a24f4"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#afd94c820b193c151ddbaae99185a24f4">OpenMS::MSExperiment::end</a></div><div class="ttdeci">ConstIterator end() const </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:162</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a78b38fac5fb7ca9480209042d49605ba"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a78b38fac5fb7ca9480209042d49605ba">OpenMS::MSExperiment::operator!=</a></div><div class="ttdeci">bool operator!=(const MSExperiment &rhs) const </div><div class="ttdoc">Equality operator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:234</div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramSettings_html_a68c34f5f5adf5049a53084716add11bda37ef0f7f2bed3939a8c3e135067b8705"><div class="ttname"><a href="classOpenMS_1_1ChromatogramSettings.html#a68c34f5f5adf5049a53084716add11bda37ef0f7f2bed3939a8c3e135067b8705">OpenMS::ChromatogramSettings::EMISSION_CHROMATOGRAM</a></div><div class="ttdef"><b>Definition:</b> ChromatogramSettings.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a878abca09cb3f6810e634b72b99007eb"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a878abca09cb3f6810e634b72b99007eb">OpenMS::MSExperiment::areaBegin</a></div><div class="ttdeci">AreaIterator areaBegin(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz)</div><div class="ttdoc">Returns an area iterator for area. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:311</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a0aaed6b7672a2808c67006e604708c76"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a0aaed6b7672a2808c67006e604708c76">OpenMS::MSExperiment::getSpectra</a></div><div class="ttdeci">const std::vector< MSSpectrum< PeakT > > & getSpectra() const </div><div class="ttdoc">returns the spectra list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:744</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a181486a43da338e31f089df7661f50bb"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a181486a43da338e31f089df7661f50bb">OpenMS::MSExperiment::CoordinateType</a></div><div class="ttdeci">PeakType::CoordinateType CoordinateType</div><div class="ttdoc">Coordinate type of peak positions. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:85</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html_a17d1a1e2129fe7ed31600ef8e73c5f9c"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html#a17d1a1e2129fe7ed31600ef8e73c5f9c">OpenMS::RangeManager< 2 >::int_range_</a></div><div class="ttdeci">IntensityRangeType int_range_</div><div class="ttdoc">Intensity range (1-dimensional) </div><div class="ttdef"><b>Definition:</b> RangeManager.h:149</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a698f324c36214cc6ffb30a4868a88b2b"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a698f324c36214cc6ffb30a4868a88b2b">OpenMS::MSExperiment::PeakType</a></div><div class="ttdeci">PeakT PeakType</div><div class="ttdoc">Peak type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ad9c7f3105519d825fa5f0ec8c9b94148"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ad9c7f3105519d825fa5f0ec8c9b94148">OpenMS::MSExperiment::reserveSpaceSpectra</a></div><div class="ttdeci">void reserveSpaceSpectra(Size s)</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:169</div></div>
<div class="ttc" id="group__Concept_html_ga5162db95dc78bdf2e3a71d73bec703e9"><div class="ttname"><a href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">OpenMS::UInt64</a></div><div class="ttdeci">OPENMS_UINT64_TYPE UInt64</div><div class="ttdoc">Unsigned integer type (64bit) </div><div class="ttdef"><b>Definition:</b> Types.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a05de1d78d72149ac5c9fa2d8aec6f6cd"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a05de1d78d72149ac5c9fa2d8aec6f6cd">OpenMS::MSExperiment::spectra_</a></div><div class="ttdeci">std::vector< SpectrumType > spectra_</div><div class="ttdoc">spectra </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:844</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a167f63a2d1a578a83eb07c33a25a8f43"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a167f63a2d1a578a83eb07c33a25a8f43">OpenMS::MSExperiment::AreaType</a></div><div class="ttdeci">DRange< 2 > AreaType</div><div class="ttdoc">Area type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a0dd6c8130427f887b79db48cfd58181a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a0dd6c8130427f887b79db48cfd58181a">OpenMS::MSExperiment::ConstAreaIterator</a></div><div class="ttdeci">Internal::AreaIterator< const PeakT, const PeakT &, const PeakT *, ConstIterator, typename SpectrumType::ConstIterator > ConstAreaIterator</div><div class="ttdoc">Immutable area iterator type (for traversal of a rectangular subset of the peaks) ...</div><div class="ttdef"><b>Definition:</b> MSExperiment.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae9dafbb74a1a4c430ceef03e25ab8e10"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae9dafbb74a1a4c430ceef03e25ab8e10">OpenMS::MSExperiment::addSpectrum</a></div><div class="ttdeci">void addSpectrum(const MSSpectrum< PeakT > &spectrum)</div><div class="ttdoc">adds a spectra to the list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:738</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a4c61e437da9328fe32bfa0ab529d429c"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a4c61e437da9328fe32bfa0ab529d429c">OpenMS::MSExperiment::getExperimentalSettings</a></div><div class="ttdeci">ExperimentalSettings & getExperimentalSettings()</div><div class="ttdoc">returns the meta information of this experiment (mutable access) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:670</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_adbc1e31b95b2364ef4b3b1ba94b0aa8d"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#adbc1e31b95b2364ef4b3b1ba94b0aa8d">OpenMS::MSExperiment::getMSLevels</a></div><div class="ttdeci">const std::vector< UInt > & getMSLevels() const </div><div class="ttdoc">returns an array of MS levels </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:561</div></div>
<div class="ttc" id="classOpenMS_1_1DRange_html"><div class="ttname"><a href="classOpenMS_1_1DRange.html">OpenMS::DRange< 2 ></a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_abad159f926fca4e34260f1331a5847c1"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#abad159f926fca4e34260f1331a5847c1">OpenMS::MSExperiment::MSExperiment</a></div><div class="ttdeci">MSExperiment(const MSExperiment &source)</div><div class="ttdoc">Copy constructor. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:188</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="ExperimentalSettings_8h_html"><div class="ttname"><a href="ExperimentalSettings_8h.html">ExperimentalSettings.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a50d19782103ccc00edaabfba88dd2598"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a50d19782103ccc00edaabfba88dd2598">OpenMS::MSExperiment::isSorted</a></div><div class="ttdeci">bool isSorted(bool check_mz=true) const </div><div class="ttdoc">Checks if all spectra are sorted with respect to ascending RT. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:613</div></div>
<div class="ttc" id="classOpenMS_1_1PersistentObject_html_ad88b5f0f6c90153e67e86b0b761e54c4"><div class="ttname"><a href="classOpenMS_1_1PersistentObject.html#ad88b5f0f6c90153e67e86b0b761e54c4">OpenMS::PersistentObject::clearId</a></div><div class="ttdeci">void clearId(bool deep=true)</div><div class="ttdoc">Clears the persistence id. </div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html_af78fdc64006d9f5578691a0136178674"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html#af78fdc64006d9f5578691a0136178674">OpenMS::ExperimentalSettings::operator=</a></div><div class="ttdeci">ExperimentalSettings & operator=(const ExperimentalSettings &source)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a4c105ad43f3c61a53997af8ba28720e2"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a4c105ad43f3c61a53997af8ba28720e2">OpenMS::MSExperiment::setChromatograms</a></div><div class="ttdeci">void setChromatograms(const std::vector< MSChromatogram< ChromatogramPeakType > > &chromatograms)</div><div class="ttdoc">sets the chromatogram list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:756</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a18ecdc4784f2b340944659a1847557e9"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a18ecdc4784f2b340944659a1847557e9">OpenMS::MSExperiment::getDataRange</a></div><div class="ttdeci">const AreaType & getDataRange() const </div><div class="ttdoc">Returns RT and m/z range the data lies in. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:549</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae9b04b8c759e9fbe9079c8bfa3f85ef8"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae9b04b8c759e9fbe9079c8bfa3f85ef8">OpenMS::MSExperiment::operator=</a></div><div class="ttdeci">MSExperiment & operator=(const ExperimentalSettings &source)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:219</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a4ea10711f169cfa40e8475bb4d226514"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a4ea10711f169cfa40e8475bb4d226514">OpenMS::MSExperiment::getSpectra</a></div><div class="ttdeci">std::vector< MSSpectrum< PeakT > > & getSpectra()</div><div class="ttdoc">returns the spectra list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:750</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a62fd7dbc7f6e5cc960d5db28524512f8"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a62fd7dbc7f6e5cc960d5db28524512f8">OpenMS::MSExperiment::set2DData</a></div><div class="ttdeci">void set2DData(const Container &cont)</div><div class="ttdoc">Assignment of a 2D spectrum to MSExperiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:275</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aee0a1a68d0fab63eefa6e14010b4a7f0"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aee0a1a68d0fab63eefa6e14010b4a7f0">OpenMS::MSExperiment::ConstIterator</a></div><div class="ttdeci">std::vector< SpectrumType >::const_iterator ConstIterator</div><div class="ttdoc">Non-mutable iterator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:103</div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramPeak_html_ab875c2479c6cd2a0189e4684bfa4f97d"><div class="ttname"><a href="classOpenMS_1_1ChromatogramPeak.html#ab875c2479c6cd2a0189e4684bfa4f97d">OpenMS::ChromatogramPeak::setIntensity</a></div><div class="ttdeci">void setIntensity(IntensityType intensity)</div><div class="ttdoc">Mutable access to the data point intensity (height) </div><div class="ttdef"><b>Definition:</b> ChromatogramPeak.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_afb936fe46d35a9d29e36552a68c1ef2a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#afb936fe46d35a9d29e36552a68c1ef2a">OpenMS::MSExperiment::areaEnd</a></div><div class="ttdeci">AreaIterator areaEnd()</div><div class="ttdoc">Returns an invalid area iterator marking the end of an area. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:321</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_af67f955c87166e64d9361815dc3760b5"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#af67f955c87166e64d9361815dc3760b5">OpenMS::MSExperiment::getMaxRT</a></div><div class="ttdeci">CoordinateType getMaxRT() const </div><div class="ttdoc">returns the maximal retention time value </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:539</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aac09407a6369916d487f3a83527b8398"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">OpenMS::MSExperiment::getSize</a></div><div class="ttdeci">UInt64 getSize() const </div><div class="ttdoc">returns the total number of peaks </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:555</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_aac8c50f318154e9e5b7b01aee806e17f"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">OpenMS::MSSpectrum::setRT</a></div><div class="ttdeci">void setRT(DoubleReal rt)</div><div class="ttdoc">Sets the absolute retention time (is seconds) </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:221</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_af072fc84225ae927f7527f208ea86cbd"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#af072fc84225ae927f7527f208ea86cbd">OpenMS::MSExperiment::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data)</div><div class="ttdoc">Clears all data and meta data. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:809</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a60095ad674632c73d7d08ebc1e2b05f5"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a60095ad674632c73d7d08ebc1e2b05f5">OpenMS::MSExperiment::operator=</a></div><div class="ttdeci">MSExperiment & operator=(const MSExperiment &source)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:199</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ac6e61de369e994009e36f344f99c15ad"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ac6e61de369e994009e36f344f99c15ad">OpenMS::MSExperiment::empty</a></div><div class="ttdeci">bool empty() const </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aaa28bff92147612bdfc8ac6892395c93"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aaa28bff92147612bdfc8ac6892395c93">OpenMS::MSExperiment::RTBegin</a></div><div class="ttdeci">Iterator RTBegin(CoordinateType rt)</div><div class="ttdoc">Fast search for spectrum range begin. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:375</div></div>
<div class="ttc" id="MSChromatogram_8h_html"><div class="ttname"><a href="MSChromatogram_8h.html">MSChromatogram.h</a></div></div>
<div class="ttc" id="AdditiveSeries_8C_html_a75145a9f1f2689d0f54565ffbdb1f5d6"><div class="ttname"><a href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a></div><div class="ttdeci">Feature::CoordinateType CoordinateType</div><div class="ttdef"><b>Definition:</b> AdditiveSeries.C:52</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a08f107173406c1c71a7127eebef82515"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a08f107173406c1c71a7127eebef82515">OpenMS::MSExperiment::Base</a></div><div class="ttdeci">std::vector< SpectrumType > Base</div><div class="ttdoc">STL base class type. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:95</div></div>
<div class="ttc" id="classOpenMS_1_1ChromatogramPeak_html"><div class="ttname"><a href="classOpenMS_1_1ChromatogramPeak.html">OpenMS::ChromatogramPeak</a></div><div class="ttdoc">A 1-dimensional raw data point or peak for chromatograms. </div><div class="ttdef"><b>Definition:</b> ChromatogramPeak.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a41f3cfaba60bdd362dc5f4c0494e0a23"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a41f3cfaba60bdd362dc5f4c0494e0a23">OpenMS::MSExperiment::setSpectra</a></div><div class="ttdeci">void setSpectra(const std::vector< MSSpectrum< PeakT > > &spectra)</div><div class="ttdoc">sets the spectra list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:732</div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html">OpenMS::RangeManager</a></div><div class="ttdoc">Handles the managment of a position and intensity range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:48</div></div>
<div class="ttc" id="PersistentObject_8h_html"><div class="ttname"><a href="PersistentObject_8h.html">PersistentObject.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae6cec659c6191c8cb73a1f6af8eba1cd"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd">OpenMS::MSExperiment::updateRanges</a></div><div class="ttdeci">virtual void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:403</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ab8aa658ccc7d2555975e8f90c09c211c"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ab8aa658ccc7d2555975e8f90c09c211c">OpenMS::MSExperiment::total_size_</a></div><div class="ttdeci">UInt64 total_size_</div><div class="ttdoc">Number of all data points. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:838</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="Exception_8h_html"><div class="ttname"><a href="Exception_8h.html">Exception.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a65f612b2c985382e4e8946bc60da8f75"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a65f612b2c985382e4e8946bc60da8f75">OpenMS::MSExperiment::getPrecursorSpectrum</a></div><div class="ttdeci">ConstIterator getPrecursorSpectrum(ConstIterator iterator) const </div><div class="ttdoc">Returns the precursor spectrum of the scan pointed to by iterator. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:680</div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html">OpenMS::ExperimentalSettings</a></div><div class="ttdoc">Description of the experimental settings. </div><div class="ttdef"><b>Definition:</b> ExperimentalSettings.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aca192a8c89187e4311eacc9daa073c7b"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aca192a8c89187e4311eacc9daa073c7b">OpenMS::MSExperiment::clearChildIds_</a></div><div class="ttdeci">virtual void clearChildIds_()</div><div class="ttdoc">Clears the persistence id of all sub-objects. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:827</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a02fccfed86a20f8bd0f6b98c23fadb2e"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a02fccfed86a20f8bd0f6b98c23fadb2e">OpenMS::MSExperiment::getChromatograms</a></div><div class="ttdeci">const std::vector< MSChromatogram< ChromatogramPeakType > > & getChromatograms() const </div><div class="ttdoc">returns the chromatogram list </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:768</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aeb8a08dab209e7d8bd94ea796e8055e7"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aeb8a08dab209e7d8bd94ea796e8055e7">OpenMS::MSExperiment::begin</a></div><div class="ttdeci">ConstIterator begin() const </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:152</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a9737d91a86f67021ec794749b5b6840a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a9737d91a86f67021ec794749b5b6840a">OpenMS::MSExperiment::ms_levels_</a></div><div class="ttdeci">std::vector< UInt > ms_levels_</div><div class="ttdoc">MS levels of the data. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:836</div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html_a2d81d988f41678e20ddcf7682553e29f"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html#a2d81d988f41678e20ddcf7682553e29f">OpenMS::ExperimentalSettings::ExperimentalSettings</a></div><div class="ttdeci">ExperimentalSettings()</div><div class="ttdoc">Constructor. </div></div>
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