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<a href="MSQuantifications_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
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<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
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<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Mathias Walzer$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Mathias Walzer$</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_METADATA_MSQUANTIFICATIONS_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_METADATA_MSQUANTIFICATIONS_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ExperimentalSettings_8h.html">OpenMS/METADATA/ExperimentalSettings.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Exception_8h.html">OpenMS/CONCEPT/Exception.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ConsensusMap_8h.html">OpenMS/KERNEL/ConsensusMap.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="comment">//~ #include &lt;OpenMS/KERNEL/ConsensusFeature.h&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="FeatureMap_8h.html">OpenMS/KERNEL/FeatureMap.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DataProcessing_8h.html">OpenMS/METADATA/DataProcessing.h</a>&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;{</div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html">   51</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> :</div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a></div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;  {</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;</div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a> <a class="code" href="classOpenMS_1_1CVTermList.html">ParamGroupList</a>;         <span class="comment">// userparams are exclusively inside the CVTermList&#39;s MetaInfoInterface</span></div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#a7294516bd2b0524b7efd07e7b0318e4aaa98b6a255ecf98e25e84e49be2903267">   60</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1MSQuantifications.html#a7294516bd2b0524b7efd07e7b0318e4a">QUANT_TYPES</a> {MS1LABEL = 0, MS2LABEL, LABELFREE, SIZE_OF_QUANT_TYPES};       <span class="comment">// derived from processing applied</span></div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#ac9bdd97f6228d008856451219797a9b8">   61</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> std::string NamesOfQuantTypes[SIZE_OF_QUANT_TYPES];</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    <span class="comment">//~ InputFiles: //~ searchdb abbildung version,releasedate,#entries,dbname ber paramgrouplist</span></div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    <span class="comment">//~ struct ParamGroupList</span></div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="comment">//~ ParamGroupList()</span></div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    <span class="comment">//~ ParamGroupList(const ParamGroupList&amp; rhs)</span></div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    <span class="comment">//~ : cv_params(rhs.cv_params)</span></div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    <span class="comment">//~ ~ParamGroupList()</span></div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    <span class="comment">//~ ParamGroupList&amp; operator = (const ParamGroupList&amp; rhs)</span></div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <span class="comment">//~ if (&amp;rhs != this)</span></div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <span class="comment">//~ cv_params = rhs.cv_params;</span></div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <span class="comment">//~ user_params = rhs.user_params;</span></div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;    <span class="comment">//~ return *this;</span></div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    <span class="comment">//~ MetaInfoInterface user_params;</span></div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    <span class="comment">//~ CVTermList cv_params;</span></div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    <span class="comment">//~ };</span></div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">   94</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a></div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    {</div>
<div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a491366fda4329e081ce936008a1f2918">   96</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a491366fda4329e081ce936008a1f2918">AnalysisSummary</a>()</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;      {</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;      }</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;</div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ab95b0c8f497362cea18e64362fe979cf">  100</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ab95b0c8f497362cea18e64362fe979cf">AnalysisSummary</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> &amp; rhs) :</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        cv_params_(rhs.cv_params_)</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;      {</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;        user_params_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#aa1a6a668ec82683a1475e6d8e6197ccd">user_params_</a>;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        quant_type_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ac1b73d52b4aaea7aefc1387d9e820a5e">quant_type_</a>;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;      }</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;</div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a6b518370c6ae92384b524149a976719f">  107</a></span>&#160;      <span class="keyword">virtual</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a6b518370c6ae92384b524149a976719f">~AnalysisSummary</a>()</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;      {</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;      }</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;</div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a5913249167befd801989299626a90c8c">  111</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> &amp; <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a5913249167befd801989299626a90c8c">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> &amp; rhs)</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;      {</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;        <span class="keywordflow">if</span> (&amp;rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        {</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;          cv_params_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a4fca06c616e7526f5ffcd271d97bb9d3">cv_params_</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;          user_params_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#aa1a6a668ec82683a1475e6d8e6197ccd">user_params_</a>;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;          quant_type_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ac1b73d52b4aaea7aefc1387d9e820a5e">quant_type_</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        }</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;      }</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#aa1a6a668ec82683a1475e6d8e6197ccd">  122</a></span>&#160;      <a class="code" href="classOpenMS_1_1MetaInfo.html">MetaInfo</a> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#aa1a6a668ec82683a1475e6d8e6197ccd">user_params_</a>;</div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a4fca06c616e7526f5ffcd271d97bb9d3">  123</a></span>&#160;      <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a4fca06c616e7526f5ffcd271d97bb9d3">cv_params_</a>;</div>
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ac1b73d52b4aaea7aefc1387d9e820a5e">  124</a></span>&#160;      <a class="code" href="classOpenMS_1_1MSQuantifications.html#a7294516bd2b0524b7efd07e7b0318e4a">QUANT_TYPES</a> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ac1b73d52b4aaea7aefc1387d9e820a5e">quant_type_</a>;</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;    };</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;</div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html">  127</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html">Assay</a></div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    {</div>
<div class="line"><a name="l00129"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac135562f64eaa15b86eced0d832c6111">  129</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac135562f64eaa15b86eced0d832c6111">Assay</a>()</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      {</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;      }</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;</div>
<div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a8dd4b8d3f477e32c7836dd23715aa5ec">  133</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a8dd4b8d3f477e32c7836dd23715aa5ec">Assay</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html">Assay</a> &amp; rhs)</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;      {</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        uid_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ab30cd1fb1af9b5c56c4de1186d841197">uid_</a>;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        mods_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a82ab0475c00773bbdaf34c88322d0559">mods_</a>;</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        raw_files_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a5e0f51092f05b281188e0051d499b07c">raw_files_</a>;</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        feature_maps_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#adc86584867673184d36d9eabb5c519f6">feature_maps_</a>;</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;      }</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;</div>
<div class="line"><a name="l00141"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac1092159189811cfa1da1da2287d4556">  141</a></span>&#160;      <span class="keyword">virtual</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac1092159189811cfa1da1da2287d4556">~Assay</a>()</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;      {</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;      }</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;</div>
<div class="line"><a name="l00145"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac5c17f72b94d48845dbe63444c86f711">  145</a></span>&#160;      <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html">Assay</a> &amp; <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac5c17f72b94d48845dbe63444c86f711">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html">Assay</a> &amp; rhs)</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;      {</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;        <span class="keywordflow">if</span> (&amp;rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        {</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;          uid_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ab30cd1fb1af9b5c56c4de1186d841197">uid_</a>;</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;          mods_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a82ab0475c00773bbdaf34c88322d0559">mods_</a>;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;          raw_files_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a5e0f51092f05b281188e0051d499b07c">raw_files_</a>;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;          feature_maps_ = rhs.<a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#adc86584867673184d36d9eabb5c519f6">feature_maps_</a>;</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;        }</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;      }</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;</div>
<div class="line"><a name="l00157"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ab30cd1fb1af9b5c56c4de1186d841197">  157</a></span>&#160;      <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ab30cd1fb1af9b5c56c4de1186d841197">uid_</a>;</div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a82ab0475c00773bbdaf34c88322d0559">  158</a></span>&#160;      std::vector&lt;std::pair&lt;String, DoubleReal&gt; &gt; <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a82ab0475c00773bbdaf34c88322d0559">mods_</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a5e0f51092f05b281188e0051d499b07c">  159</a></span>&#160;      std::vector&lt;ExperimentalSettings&gt; <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a5e0f51092f05b281188e0051d499b07c">raw_files_</a>;</div>
<div class="line"><a name="l00160"></a><span class="lineno"><a class="line" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#adc86584867673184d36d9eabb5c519f6">  160</a></span>&#160;      std::map&lt;size_t, FeatureMap&lt;&gt; &gt; <a class="code" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#adc86584867673184d36d9eabb5c519f6">feature_maps_</a>;           <span class="comment">// iTRAQ needs no FeatureMaps so ExperimentalSettings are not directly mapped to FeatureMaps</span></div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    };</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    <span class="comment">// TODO handle referencing from consensusmaps to featuremaps/rawfiles</span></div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    <span class="comment">// TODO add ContactPerson or something to (Consensus)FeatureMap or DataProcessing (see below)</span></div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    <span class="comment">// TODO rewrite OpenMS::DataProcessing - data not yet linked in openms core formats - below should go in analysissummary of MSQuantifications - input/output not possible to be carried along</span></div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    <span class="comment">//~ if(DataProcessing::NamesOfProcessingAction[*it] == String(&quot;Quantitation&quot;))</span></div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    <span class="comment">//~ if (processing.getSoftware().getName()==String(&quot;SILACAnalyzer&quot;))</span></div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;    <span class="comment">//~ experiment_type = MS1LABEL;</span></div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    <span class="comment">//~ else if (processing.getSoftware().getName()==String(&quot;ITRAQAnalyzer&quot;))</span></div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;    <span class="comment">//~ experiment_type = MS2LABEL;</span></div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    <span class="comment">//~ else</span></div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    <span class="comment">//~ {</span></div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    <span class="comment">//~ experiment_type = LABELFREE;</span></div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    <span class="comment">//~ }</span></div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="comment">//~ QUANT_TYPES experiment_type = MS1LABEL;</span></div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;    <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a>();</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    ~<a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a>();</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;    <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> &amp; source);</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;    <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> &amp; source);</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;    <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;    <span class="keywordtype">bool</span> operator!=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;</div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    <span class="comment">// void load(const String &amp; filename, bool trim_lines = false, Int first_n = -1);</span></div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;    <span class="keyword">const</span> std::vector&lt;DataProcessing&gt; getDataProcessingList() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    <span class="keyword">const</span> std::vector&lt;Assay&gt; &amp; getAssays() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;    std::vector&lt;Assay&gt; &amp; getAssays();</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <span class="comment">// std::map&lt;String, ConsensusFeature::Ratio&gt; &amp; getRatios(); // TODO : implement</span></div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;    <span class="keyword">const</span> std::vector&lt;ConsensusMap&gt; &amp; getConsensusMaps() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;    std::vector&lt;ConsensusMap&gt; &amp; getConsensusMaps();</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;    <span class="keywordtype">void</span> setConsensusMaps(<span class="keyword">const</span> std::vector&lt;ConsensusMap&gt; &amp; );</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;    <span class="keyword">const</span> std::vector&lt;FeatureMap&lt;&gt; &gt; &amp; getFeatureMaps() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;    <span class="keyword">const</span> <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> &amp; getAnalysisSummary() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> &amp; getAnalysisSummary();</div>
<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;    <span class="keywordtype">void</span> setDataProcessingList(std::vector&lt;DataProcessing&gt; &amp; dpl);</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;    <span class="keywordtype">void</span> setAnalysisSummaryQuantType(<a class="code" href="classOpenMS_1_1MSQuantifications.html#a7294516bd2b0524b7efd07e7b0318e4a">QUANT_TYPES</a> r);</div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;    <span class="keywordtype">void</span> addConsensusMap(<a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; m);</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;    <span class="keywordtype">void</span> assignUIDs();</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;    <span class="keywordtype">void</span> registerExperiment(<a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment&lt;Peak1D&gt;</a> &amp; exp, std::vector&lt;std::vector&lt;std::pair&lt;String, DoubleReal&gt; &gt; &gt; labels);</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;</div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00233"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#ac921d188f635ab1234e4302217952fcc">  233</a></span>&#160;    <a class="code" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">AnalysisSummary</a> <a class="code" href="classOpenMS_1_1MSQuantifications.html#ac921d188f635ab1234e4302217952fcc">analysis_summary_</a>;</div>
<div class="line"><a name="l00234"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#a31a6a28453cd3ecf826d791cc1beea71">  234</a></span>&#160;    std::vector&lt;MetaInfo&gt; <a class="code" href="classOpenMS_1_1MSQuantifications.html#a31a6a28453cd3ecf826d791cc1beea71">bibliographic_reference_</a>;</div>
<div class="line"><a name="l00235"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#a14aa10d35e55c4f810875c95f4858149">  235</a></span>&#160;    std::vector&lt;ConsensusMap&gt; <a class="code" href="classOpenMS_1_1MSQuantifications.html#a14aa10d35e55c4f810875c95f4858149">consensus_maps_</a>;</div>
<div class="line"><a name="l00236"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#a69a6908f1b6ddd4cfbbbffa26d0e2535">  236</a></span>&#160;    std::vector&lt;FeatureMap&lt;&gt; &gt; <a class="code" href="classOpenMS_1_1MSQuantifications.html#a69a6908f1b6ddd4cfbbbffa26d0e2535">feature_maps_</a>;</div>
<div class="line"><a name="l00237"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#ad4aeeb3163788d391e4fc7fff678af7b">  237</a></span>&#160;    std::vector&lt;Assay&gt; <a class="code" href="classOpenMS_1_1MSQuantifications.html#ad4aeeb3163788d391e4fc7fff678af7b">assays_</a>;</div>
<div class="line"><a name="l00238"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSQuantifications.html#ae902f37a0295757a8e804d990fea68e5">  238</a></span>&#160;    std::vector&lt;DataProcessing&gt; <a class="code" href="classOpenMS_1_1MSQuantifications.html#ae902f37a0295757a8e804d990fea68e5">data_processings_</a>;</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    <span class="comment">//~ std::map&lt;String,ConsensusFeature::Ratio &gt; ratio_calculations_;</span></div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;  };</div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;<span class="preprocessor">#endif // OPENMS_METADATA_MSQUANTIFICATIONS_H</span></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_a8dd4b8d3f477e32c7836dd23715aa5ec"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a8dd4b8d3f477e32c7836dd23715aa5ec">OpenMS::MSQuantifications::Assay::Assay</a></div><div class="ttdeci">Assay(const Assay &amp;rhs)</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:133</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="ConsensusMap_8h_html"><div class="ttname"><a href="ConsensusMap_8h.html">ConsensusMap.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_a491366fda4329e081ce936008a1f2918"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a491366fda4329e081ce936008a1f2918">OpenMS::MSQuantifications::AnalysisSummary::AnalysisSummary</a></div><div class="ttdeci">AnalysisSummary()</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:96</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_a14aa10d35e55c4f810875c95f4858149"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#a14aa10d35e55c4f810875c95f4858149">OpenMS::MSQuantifications::consensus_maps_</a></div><div class="ttdeci">std::vector&lt; ConsensusMap &gt; consensus_maps_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:235</div></div>
<div class="ttc" id="classOpenMS_1_1CVTermList_html"><div class="ttname"><a href="classOpenMS_1_1CVTermList.html">OpenMS::CVTermList</a></div><div class="ttdoc">Representation of controlled vocabulary term list. </div><div class="ttdef"><b>Definition:</b> CVTermList.h:54</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_a4fca06c616e7526f5ffcd271d97bb9d3"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a4fca06c616e7526f5ffcd271d97bb9d3">OpenMS::MSQuantifications::AnalysisSummary::cv_params_</a></div><div class="ttdeci">CVTermList cv_params_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:123</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html">OpenMS::MSQuantifications::Assay</a></div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_ae902f37a0295757a8e804d990fea68e5"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#ae902f37a0295757a8e804d990fea68e5">OpenMS::MSQuantifications::data_processings_</a></div><div class="ttdeci">std::vector&lt; DataProcessing &gt; data_processings_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:238</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_ab30cd1fb1af9b5c56c4de1186d841197"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ab30cd1fb1af9b5c56c4de1186d841197">OpenMS::MSQuantifications::Assay::uid_</a></div><div class="ttdeci">String uid_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:157</div></div>
<div class="ttc" id="DataProcessing_8h_html"><div class="ttname"><a href="DataProcessing_8h.html">DataProcessing.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_aa1a6a668ec82683a1475e6d8e6197ccd"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#aa1a6a668ec82683a1475e6d8e6197ccd">OpenMS::MSQuantifications::AnalysisSummary::user_params_</a></div><div class="ttdeci">MetaInfo user_params_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:122</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_a5913249167befd801989299626a90c8c"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a5913249167befd801989299626a90c8c">OpenMS::MSQuantifications::AnalysisSummary::operator=</a></div><div class="ttdeci">AnalysisSummary &amp; operator=(const AnalysisSummary &amp;rhs)</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:111</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_ac1b73d52b4aaea7aefc1387d9e820a5e"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ac1b73d52b4aaea7aefc1387d9e820a5e">OpenMS::MSQuantifications::AnalysisSummary::quant_type_</a></div><div class="ttdeci">QUANT_TYPES quant_type_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:124</div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_a6b518370c6ae92384b524149a976719f"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a6b518370c6ae92384b524149a976719f">OpenMS::MSQuantifications::AnalysisSummary::~AnalysisSummary</a></div><div class="ttdeci">virtual ~AnalysisSummary()</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:107</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_a5e0f51092f05b281188e0051d499b07c"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a5e0f51092f05b281188e0051d499b07c">OpenMS::MSQuantifications::Assay::raw_files_</a></div><div class="ttdeci">std::vector&lt; ExperimentalSettings &gt; raw_files_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:159</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html">OpenMS::MSQuantifications</a></div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:51</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_ac135562f64eaa15b86eced0d832c6111"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac135562f64eaa15b86eced0d832c6111">OpenMS::MSQuantifications::Assay::Assay</a></div><div class="ttdeci">Assay()</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:129</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_ac921d188f635ab1234e4302217952fcc"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#ac921d188f635ab1234e4302217952fcc">OpenMS::MSQuantifications::analysis_summary_</a></div><div class="ttdeci">AnalysisSummary analysis_summary_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:233</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_adc86584867673184d36d9eabb5c519f6"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#adc86584867673184d36d9eabb5c519f6">OpenMS::MSQuantifications::Assay::feature_maps_</a></div><div class="ttdeci">std::map&lt; size_t, FeatureMap&lt;&gt; &gt; feature_maps_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:160</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_a7294516bd2b0524b7efd07e7b0318e4a"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#a7294516bd2b0524b7efd07e7b0318e4a">OpenMS::MSQuantifications::QUANT_TYPES</a></div><div class="ttdeci">QUANT_TYPES</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:60</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_ac1092159189811cfa1da1da2287d4556"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac1092159189811cfa1da1da2287d4556">OpenMS::MSQuantifications::Assay::~Assay</a></div><div class="ttdeci">virtual ~Assay()</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:141</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_ad4aeeb3163788d391e4fc7fff678af7b"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#ad4aeeb3163788d391e4fc7fff678af7b">OpenMS::MSQuantifications::assays_</a></div><div class="ttdeci">std::vector&lt; Assay &gt; assays_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:237</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment&lt; Peak1D &gt;</a></div></div>
<div class="ttc" id="ExperimentalSettings_8h_html"><div class="ttname"><a href="ExperimentalSettings_8h.html">ExperimentalSettings.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html">OpenMS::MSQuantifications::AnalysisSummary</a></div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:94</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_a82ab0475c00773bbdaf34c88322d0559"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#a82ab0475c00773bbdaf34c88322d0559">OpenMS::MSQuantifications::Assay::mods_</a></div><div class="ttdeci">std::vector&lt; std::pair&lt; String, DoubleReal &gt; &gt; mods_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_a31a6a28453cd3ecf826d791cc1beea71"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#a31a6a28453cd3ecf826d791cc1beea71">OpenMS::MSQuantifications::bibliographic_reference_</a></div><div class="ttdeci">std::vector&lt; MetaInfo &gt; bibliographic_reference_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:234</div></div>
<div class="ttc" id="classOpenMS_1_1MSQuantifications_html_a69a6908f1b6ddd4cfbbbffa26d0e2535"><div class="ttname"><a href="classOpenMS_1_1MSQuantifications.html#a69a6908f1b6ddd4cfbbbffa26d0e2535">OpenMS::MSQuantifications::feature_maps_</a></div><div class="ttdeci">std::vector&lt; FeatureMap&lt;&gt; &gt; feature_maps_</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:236</div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfo_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfo.html">OpenMS::MetaInfo</a></div><div class="ttdoc">A Type-Name-Value tuple class. </div><div class="ttdef"><b>Definition:</b> MetaInfo.h:67</div></div>
<div class="ttc" id="Exception_8h_html"><div class="ttname"><a href="Exception_8h.html">Exception.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html">OpenMS::ExperimentalSettings</a></div><div class="ttdoc">Description of the experimental settings. </div><div class="ttdef"><b>Definition:</b> ExperimentalSettings.h:59</div></div>
<div class="ttc" id="FeatureMap_8h_html"><div class="ttname"><a href="FeatureMap_8h.html">FeatureMap.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1Assay_html_ac5c17f72b94d48845dbe63444c86f711"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac5c17f72b94d48845dbe63444c86f711">OpenMS::MSQuantifications::Assay::operator=</a></div><div class="ttdeci">Assay &amp; operator=(const Assay &amp;rhs)</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:145</div></div>
<div class="ttc" id="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary_html_ab95b0c8f497362cea18e64362fe979cf"><div class="ttname"><a href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ab95b0c8f497362cea18e64362fe979cf">OpenMS::MSQuantifications::AnalysisSummary::AnalysisSummary</a></div><div class="ttdeci">AnalysisSummary(const AnalysisSummary &amp;rhs)</div><div class="ttdef"><b>Definition:</b> MSQuantifications.h:100</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:18 using doxygen 1.8.5</font></TD>
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