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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_0cb073f3ffc34c59e0f7dd814375c720.html">SIMULATION</a></li>  </ul>
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<div class="title">MSSim.h</div>  </div>
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<a href="MSSim_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Stephan Aiche$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Stephan Aiche, Chris Bielow$</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_SIMULATION_MSSIM_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_SIMULATION_MSSIM_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DefaultParamHandler_8h.html">OpenMS/DATASTRUCTURES/DefaultParamHandler.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="SimTypes_8h.html">OpenMS/SIMULATION/SimTypes.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ConsensusMap_8h.html">OpenMS/KERNEL/ConsensusMap.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="BaseLabeler_8h.html">OpenMS/SIMULATION/LABELING/BaseLabeler.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ProgressLogger_8h.html">OpenMS/CONCEPT/ProgressLogger.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;{</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html">   68</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MSSim.html">MSSim</a> :</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a>,</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;  {</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    <a class="code" href="classOpenMS_1_1MSSim.html">MSSim</a>();</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1MSSim.html">MSSim</a>();</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    <span class="keywordtype">void</span> simulate(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a> &amp; rnd_gen, <a class="code" href="classOpenMS_1_1SampleChannels.html">SampleChannels</a> &amp; peptides);</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    <a class="code" href="classOpenMS_1_1MSExperiment.html">MSSimExperiment</a> <span class="keyword">const</span> &amp; getExperiment() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;    <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapSim</a> <span class="keyword">const</span> &amp; getSimulatedFeatures() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;    <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; getChargeConsensus();</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapSim</a> <span class="keyword">const</span> &amp; getContaminants() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; getLabelingConsensus();</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <a class="code" href="classOpenMS_1_1MSExperiment.html">MSSimExperiment</a> <span class="keyword">const</span> &amp; getPeakMap() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    <a class="code" href="classOpenMS_1_1Param.html">Param</a> getParameters() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    <span class="keywordtype">void</span> syncParams_(<a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; p, <span class="keywordtype">bool</span> to_outer);</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    <span class="keywordtype">void</span> createFeatureMap_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SampleProteins.html">SampleProteins</a> &amp; peptides, <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapSim</a> &amp; features, <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> map_index);</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    <span class="keywordtype">void</span> updateMembers_();</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;</div>
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#a950bc488db2bf59a683c15ce7f0c56d1">  124</a></span>&#160;    <a class="code" href="classOpenMS_1_1MSExperiment.html">MSSimExperiment</a> <a class="code" href="classOpenMS_1_1MSSim.html#a950bc488db2bf59a683c15ce7f0c56d1">experiment_</a>;</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#aa071bc9b9f1a930addc72519b4c31d39">  126</a></span>&#160;    <a class="code" href="classOpenMS_1_1MSExperiment.html">MSSimExperiment</a> <a class="code" href="classOpenMS_1_1MSSim.html#aa071bc9b9f1a930addc72519b4c31d39">peak_map_</a>;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;</div>
<div class="line"><a name="l00128"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#afe06eb57fde086ce8eb4a4c5ef6bc1dc">  128</a></span>&#160;    <a class="code" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> <a class="code" href="classOpenMS_1_1MSSim.html#afe06eb57fde086ce8eb4a4c5ef6bc1dc">feature_maps_</a>;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;</div>
<div class="line"><a name="l00130"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#a9f04b32b80833aabd4ab8bc8c2c9ecb4">  130</a></span>&#160;    <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> <a class="code" href="classOpenMS_1_1MSSim.html#a9f04b32b80833aabd4ab8bc8c2c9ecb4">consensus_map_</a>;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#af308743a8f1280351e14790fc710be91">  132</a></span>&#160;    <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMapSim</a> <a class="code" href="classOpenMS_1_1MSSim.html#af308743a8f1280351e14790fc710be91">contaminants_map_</a>;</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;</div>
<div class="line"><a name="l00135"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MSSim.html#a813cce92a0e34c5f83c0798cae8a61ae">  135</a></span>&#160;    <a class="code" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a> * <a class="code" href="classOpenMS_1_1MSSim.html#a813cce92a0e34c5f83c0798cae8a61ae">labeler_</a>;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;  };</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;}</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html"><div class="ttname"><a href="classOpenMS_1_1MSSim.html">OpenMS::MSSim</a></div><div class="ttdoc">Central class for simulation of mass spectrometry experiments. </div><div class="ttdef"><b>Definition:</b> MSSim.h:68</div></div>
<div class="ttc" id="ConsensusMap_8h_html"><div class="ttname"><a href="ConsensusMap_8h.html">ConsensusMap.h</a></div></div>
<div class="ttc" id="SimTypes_8h_html"><div class="ttname"><a href="SimTypes_8h.html">SimTypes.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap</a></div><div class="ttdoc">A container for features. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:111</div></div>
<div class="ttc" id="ProgressLogger_8h_html"><div class="ttname"><a href="ProgressLogger_8h.html">ProgressLogger.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_a950bc488db2bf59a683c15ce7f0c56d1"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#a950bc488db2bf59a683c15ce7f0c56d1">OpenMS::MSSim::experiment_</a></div><div class="ttdeci">MSSimExperiment experiment_</div><div class="ttdef"><b>Definition:</b> MSSim.h:124</div></div>
<div class="ttc" id="BaseLabeler_8h_html"><div class="ttname"><a href="BaseLabeler_8h.html">BaseLabeler.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SampleChannels_html"><div class="ttname"><a href="classOpenMS_1_1SampleChannels.html">OpenMS::SampleChannels</a></div><div class="ttdoc">Container for multiple channels of SampleProteins. </div><div class="ttdef"><b>Definition:</b> SimTypes.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_af308743a8f1280351e14790fc710be91"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#af308743a8f1280351e14790fc710be91">OpenMS::MSSim::contaminants_map_</a></div><div class="ttdeci">FeatureMapSim contaminants_map_</div><div class="ttdef"><b>Definition:</b> MSSim.h:132</div></div>
<div class="ttc" id="DefaultParamHandler_8h_html"><div class="ttname"><a href="DefaultParamHandler_8h.html">DefaultParamHandler.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1SimRandomNumberGenerator_html"><div class="ttname"><a href="structOpenMS_1_1SimRandomNumberGenerator.html">OpenMS::SimRandomNumberGenerator</a></div><div class="ttdoc">Wrapper class for random number generators used by the simulation classes. </div><div class="ttdef"><b>Definition:</b> SimTypes.h:99</div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_afe06eb57fde086ce8eb4a4c5ef6bc1dc"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#afe06eb57fde086ce8eb4a4c5ef6bc1dc">OpenMS::MSSim::feature_maps_</a></div><div class="ttdeci">FeatureMapSimVector feature_maps_</div><div class="ttdef"><b>Definition:</b> MSSim.h:128</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment&lt; SimPointType &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1SampleProteins_html"><div class="ttname"><a href="classOpenMS_1_1SampleProteins.html">OpenMS::SampleProteins</a></div><div class="ttdoc">Container for FASTAEntry &amp;amp; abundance information. </div><div class="ttdef"><b>Definition:</b> SimTypes.h:71</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="namespaceOpenMS_html_a5377a8d620ef376a0b1eb2503b847e79"><div class="ttname"><a href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">OpenMS::FeatureMapSimVector</a></div><div class="ttdeci">std::vector&lt; FeatureMapSim &gt; FeatureMapSimVector</div><div class="ttdoc">Sim FeatureMap Vector. </div><div class="ttdef"><b>Definition:</b> SimTypes.h:80</div></div>
<div class="ttc" id="classOpenMS_1_1ProgressLogger_html"><div class="ttname"><a href="classOpenMS_1_1ProgressLogger.html">OpenMS::ProgressLogger</a></div><div class="ttdoc">Base class for all classes that want to report their progess. </div><div class="ttdef"><b>Definition:</b> ProgressLogger.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_a813cce92a0e34c5f83c0798cae8a61ae"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#a813cce92a0e34c5f83c0798cae8a61ae">OpenMS::MSSim::labeler_</a></div><div class="ttdeci">BaseLabeler * labeler_</div><div class="ttdoc">Labeling functionality. </div><div class="ttdef"><b>Definition:</b> MSSim.h:135</div></div>
<div class="ttc" id="classOpenMS_1_1DefaultParamHandler_html"><div class="ttname"><a href="classOpenMS_1_1DefaultParamHandler.html">OpenMS::DefaultParamHandler</a></div><div class="ttdoc">A base class for all classes handling default parameters. </div><div class="ttdef"><b>Definition:</b> DefaultParamHandler.h:90</div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_a9f04b32b80833aabd4ab8bc8c2c9ecb4"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#a9f04b32b80833aabd4ab8bc8c2c9ecb4">OpenMS::MSSim::consensus_map_</a></div><div class="ttdeci">ConsensusMap consensus_map_</div><div class="ttdef"><b>Definition:</b> MSSim.h:130</div></div>
<div class="ttc" id="classOpenMS_1_1BaseLabeler_html"><div class="ttname"><a href="classOpenMS_1_1BaseLabeler.html">OpenMS::BaseLabeler</a></div><div class="ttdoc">Abstract base class for all kinds of labeling techniques. </div><div class="ttdef"><b>Definition:</b> BaseLabeler.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1MSSim_html_aa071bc9b9f1a930addc72519b4c31d39"><div class="ttname"><a href="classOpenMS_1_1MSSim.html#aa071bc9b9f1a930addc72519b4c31d39">OpenMS::MSSim::peak_map_</a></div><div class="ttdeci">MSSimExperiment peak_map_</div><div class="ttdef"><b>Definition:</b> MSSim.h:126</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:18 using doxygen 1.8.5</font></TD>
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