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<a href="MassDecomposition_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Sandro Andreotti $</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_CHEMISTRY_MASSDECOMPOSITION_MASSDECOMPOSITION_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_CHEMISTRY_MASSDECOMPOSITION_MASSDECOMPOSITION_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Map_8h.html">OpenMS/DATASTRUCTURES/Map.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;{</div>
<div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MassDecomposition.html">   50</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a></div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;  {</div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;    <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a>();</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;    <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; deco);</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    <span class="keyword">explicit</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; deco);</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; rhs);</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; operator+=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; d);</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> toString() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> toExpandedString() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> operator+(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getNumberOfMaxAA() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    <span class="keywordtype">bool</span> operator&lt;(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;    <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; deco) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    <span class="keywordtype">bool</span> containsTag(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; tag) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    <span class="keywordtype">bool</span> compatible(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &amp; deco) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00109"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MassDecomposition.html#a0fa68d4a0728e0e41d6dc6b1be9eff95">  109</a></span>&#160;    <a class="code" href="classOpenMS_1_1Map.html">Map&lt;char, Size&gt;</a> <a class="code" href="classOpenMS_1_1MassDecomposition.html#a0fa68d4a0728e0e41d6dc6b1be9eff95">decomp_</a>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="classOpenMS_1_1MassDecomposition.html#a838504e6f027b4b7c4dc43da1039d0d1">  110</a></span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1MassDecomposition.html#a838504e6f027b4b7c4dc43da1039d0d1">number_of_max_aa_</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;  };</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;<span class="preprocessor">#endif // OPENMS_CHEMISTRY_MASSDECOMPOSITION_MASSDECOMPOSITION_H</span></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="Map_8h_html"><div class="ttname"><a href="Map_8h.html">Map.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MassDecomposition_html_a838504e6f027b4b7c4dc43da1039d0d1"><div class="ttname"><a href="classOpenMS_1_1MassDecomposition.html#a838504e6f027b4b7c4dc43da1039d0d1">OpenMS::MassDecomposition::number_of_max_aa_</a></div><div class="ttdeci">Size number_of_max_aa_</div><div class="ttdef"><b>Definition:</b> MassDecomposition.h:110</div></div>
<div class="ttc" id="classOpenMS_1_1MassDecomposition_html_a0fa68d4a0728e0e41d6dc6b1be9eff95"><div class="ttname"><a href="classOpenMS_1_1MassDecomposition.html#a0fa68d4a0728e0e41d6dc6b1be9eff95">OpenMS::MassDecomposition::decomp_</a></div><div class="ttdeci">Map&lt; char, Size &gt; decomp_</div><div class="ttdef"><b>Definition:</b> MassDecomposition.h:109</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1MassDecomposition_html"><div class="ttname"><a href="classOpenMS_1_1MassDecomposition.html">OpenMS::MassDecomposition</a></div><div class="ttdoc">Class represents a decomposition of a mass into amino acids. </div><div class="ttdef"><b>Definition:</b> MassDecomposition.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map&lt; char, Size &gt;</a></div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
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