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<div class="title">Matrix.h</div> </div>
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<a href="Matrix_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Erhan Kenar $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_DATASTRUCTURES_MATRIX_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_DATASTRUCTURES_MATRIX_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="Macros_8h.html">OpenMS/CONCEPT/Macros.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <cmath></span> <span class="comment">// pow()</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <iomanip></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <gsl/gsl_matrix.h></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <gsl/gsl_vector.h></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <gsl/gsl_linalg.h></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> {</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Value></div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html"> 79</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a> :</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">protected</span> std::vector<Value></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  {</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f"> 83</a></span>  <span class="keyword">typedef</span> std::vector<Value> <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a>;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b"> 89</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a> <a class="code" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">container_type</a>;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aa4336e7fd692b20bda7b7227fa9c9f55"> 91</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::difference_type <a class="code" href="classOpenMS_1_1Matrix.html#aa4336e7fd692b20bda7b7227fa9c9f55">difference_type</a>;</div>
<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5"> 92</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::size_type <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a>;</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ae8163da75e575365fc14d7dbf3ea74de"> 94</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_iterator <a class="code" href="classOpenMS_1_1Matrix.html#ae8163da75e575365fc14d7dbf3ea74de">const_iterator</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a5e1cd0b549354885f4b5718ee8e6ea05"> 95</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_reverse_iterator <a class="code" href="classOpenMS_1_1Matrix.html#a5e1cd0b549354885f4b5718ee8e6ea05">const_reverse_iterator</a>;</div>
<div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a0bc3019d7d2ff6c73f261836bff0af3a"> 96</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::iterator <a class="code" href="classOpenMS_1_1Matrix.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a>;</div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a16917878f2694c195d27c8ffe0a31a8b"> 97</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::reverse_iterator <a class="code" href="classOpenMS_1_1Matrix.html#a16917878f2694c195d27c8ffe0a31a8b">reverse_iterator</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708"> 99</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::const_reference <a class="code" href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708">const_reference</a>;</div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aa2158dc2d25210ef557a40d3b8a521e3"> 100</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::pointer <a class="code" href="classOpenMS_1_1Matrix.html#aa2158dc2d25210ef557a40d3b8a521e3">pointer</a>;</div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c"> 101</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::reference <a class="code" href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c">reference</a>;</div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c"> 102</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::value_type <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a>;</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a0a189ba1d918e84589e43ebfcea3cbc5"> 104</a></span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> Base::allocator_type <a class="code" href="classOpenMS_1_1Matrix.html#a0a189ba1d918e84589e43ebfcea3cbc5">allocator_type</a>;</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a58c6c127053db92462dd71ea9be2501d"> 109</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a> <a class="code" href="classOpenMS_1_1Matrix.html#a58c6c127053db92462dd71ea9be2501d">ContainerType</a>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a1a16e5b9c5027972c0291942e6637847"> 110</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#aa4336e7fd692b20bda7b7227fa9c9f55">difference_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#a1a16e5b9c5027972c0291942e6637847">DifferenceType</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19"> 111</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a67945f8464b125c988ded2dd2cfdf782"> 113</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#ae8163da75e575365fc14d7dbf3ea74de">const_iterator</a> <a class="code" href="classOpenMS_1_1Matrix.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a>;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a0d932b1f5b5182beddc9840ea6e134c7"> 114</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#a5e1cd0b549354885f4b5718ee8e6ea05">const_reverse_iterator</a> <a class="code" href="classOpenMS_1_1Matrix.html#a0d932b1f5b5182beddc9840ea6e134c7">ConstReverseIterator</a>;</div>
<div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a52cf141ce292251c9c6d7c22f296cbd5"> 115</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#a0bc3019d7d2ff6c73f261836bff0af3a">iterator</a> <a class="code" href="classOpenMS_1_1Matrix.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a419f3ce215cc5ae6ab8bf596b7dbcd87"> 116</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#a16917878f2694c195d27c8ffe0a31a8b">reverse_iterator</a> <a class="code" href="classOpenMS_1_1Matrix.html#a419f3ce215cc5ae6ab8bf596b7dbcd87">ReverseIterator</a>;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ab178420c906c0d488065118ef11db05a"> 118</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708">const_reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#ab178420c906c0d488065118ef11db05a">ConstReference</a>;</div>
<div class="line"><a name="l00119"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aca3af0291e687921d32e8500b5070425"> 119</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#aa2158dc2d25210ef557a40d3b8a521e3">pointer</a> <a class="code" href="classOpenMS_1_1Matrix.html#aca3af0291e687921d32e8500b5070425">Pointer</a>;</div>
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a54e1e41d0271084424540ff4482caa58"> 120</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c">reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#a54e1e41d0271084424540ff4482caa58">Reference</a>;</div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b"> 121</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b">ValueType</a>;</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span> </div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a7689bbae07cd98b4f0808673d6b038f1"> 123</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Matrix.html#a0a189ba1d918e84589e43ebfcea3cbc5">allocator_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#a7689bbae07cd98b4f0808673d6b038f1">AllocatorType</a>;</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a3aede62f513da27e6f61ae7a972b4f96"> 128</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#a3aede62f513da27e6f61ae7a972b4f96">Matrix</a>() :</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a>(),</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>(0),</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>(0)</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  {}</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a307cd3058dfd843a0b3be83db64f549a"> 134</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#a307cd3058dfd843a0b3be83db64f549a">Matrix</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#aeb005fd1250a41fce857f8be85a46843">rows</a>, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a8965490ee831637f475427b30e21a986">cols</a>, <a class="code" href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b">ValueType</a> value = <a class="code" href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b">ValueType</a>()) :</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a>(rows * cols, value),</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>(rows),</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>(cols)</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  {}</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> </div>
<div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aa62617532d21383f8b78ace1cbbcea48"> 140</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aa62617532d21383f8b78ace1cbbcea48">Matrix</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a>& source) :</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Base</a>(source),</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>(source.<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>),</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>(source.<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>)</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  {}</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#adf7e662c32853f825114543deaf8c119"> 146</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a>& <a class="code" href="classOpenMS_1_1Matrix.html#adf7e662c32853f825114543deaf8c119">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a>& rhs)</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  {</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  Base::operator=(rhs);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> = rhs.<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> = rhs.<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>;</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  }</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> </div>
<div class="line"><a name="l00154"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a2249c859d9c3503ec00d3a20fe963842"> 154</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#a2249c859d9c3503ec00d3a20fe963842">~Matrix</a>() {}</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> </div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a12ce96abb4c48284a7c1ffd2de816e7d"> 159</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708">const_reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#a12ce96abb4c48284a7c1ffd2de816e7d">operator()</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> j)<span class="keyword"> const</span></div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1Matrix.html#a8f2455726a56deea9d9a5217ed4a8ff0">getValue</a>(i, j);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  }</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a5c6959d322f63b4ff94a353b55df6e39"> 164</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c">reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#a5c6959d322f63b4ff94a353b55df6e39">operator()</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> j)</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  {</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1Matrix.html#a8f2455726a56deea9d9a5217ed4a8ff0">getValue</a>(i, j);</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  }</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> </div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a8f2455726a56deea9d9a5217ed4a8ff0"> 169</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708">const_reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#a8f2455726a56deea9d9a5217ed4a8ff0">getValue</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> j)<span class="keyword"> const</span></div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="keywordflow">return</span> Base::operator[](<a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(i, j));</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  }</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> </div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#af96bf480205f9bb200ac177821892329"> 174</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c">reference</a> <a class="code" href="classOpenMS_1_1Matrix.html#af96bf480205f9bb200ac177821892329">getValue</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> j)</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  {</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordflow">return</span> Base::operator[](<a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(i, j));</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  }</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> </div>
<div class="line"><a name="l00179"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#acea12a59f1afb620887946a432676603"> 179</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1Matrix.html#acea12a59f1afb620887946a432676603">setValue</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> j, <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a> value)</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  {</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  Base::operator[](<a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(i, j)) = value;</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  }</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> </div>
<div class="line"><a name="l00185"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a7ed1f4eb50a0d5575514ea51e7c2fe03"> 185</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">container_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#a7ed1f4eb50a0d5575514ea51e7c2fe03">row</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i)<span class="keyword"> const</span></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (i >= <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, i, <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> <span class="preprocessor"></span> <a class="code" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">container_type</a> values(<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> j = 0; j < <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>; j++)</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  {</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  values[j] = Base::operator[](<a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(i, j));</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  }</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <span class="keywordflow">return</span> values;</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  }</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19"> 199</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">container_type</a> <a class="code" href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19">col</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> <span class="keyword">const</span> i)<span class="keyword"> const</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (i >= <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, i, <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> <span class="preprocessor"></span> <a class="code" href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">container_type</a> values(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>);</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> j = 0; j < <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>; j++)</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  {</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  values[j] = Base::operator[](<a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(j, i));</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  }</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="keywordflow">return</span> values;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  }</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> </div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> </div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="keyword">using</span> Base::begin;</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <span class="keyword">using</span> Base::end;</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keyword">using</span> Base::rbegin;</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keyword">using</span> Base::rend;</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keyword">using</span> Base::front;</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keyword">using</span> Base::back;</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keyword">using</span> Base::assign;</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="keyword">using</span> Base::empty;</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keyword">using</span> Base::size;</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> </div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keyword">using</span> Base::capacity;</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keyword">using</span> Base::max_size;</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span> </div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span> </div>
<div class="line"><a name="l00240"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ac8bb3912a3ce86b15842e79d0b421204"> 240</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1Matrix.html#ac8bb3912a3ce86b15842e79d0b421204">clear</a>()</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  {</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  Base::clear();</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> = 0;</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> = 0;</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  }</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span> </div>
<div class="line"><a name="l00247"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a21b7326fb62d208413d2b63e0b07e68e"> 247</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1Matrix.html#a21b7326fb62d208413d2b63e0b07e68e">resize</a>(<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> i, <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> j, <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a> value = <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a>())</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  {</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> = i;</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> = j;</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  Base::resize(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> * <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>, value);</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  }</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a8b4002e4f5f4a07684f9e2c1bffcb248"> 254</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1Matrix.html#a8b4002e4f5f4a07684f9e2c1bffcb248">resize</a>(std::pair<Size, Size> <span class="keyword">const</span>& size_pair, <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a> value = <a class="code" href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">value_type</a>())</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  {</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> = size_pair.first;</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> = size_pair.second;</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  Base::resize(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> * <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>, value);</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  }</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span> </div>
<div class="line"><a name="l00262"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#aeb005fd1250a41fce857f8be85a46843"> 262</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#aeb005fd1250a41fce857f8be85a46843">rows</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>;</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  }</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span> </div>
<div class="line"><a name="l00268"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a8965490ee831637f475427b30e21a986"> 268</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a8965490ee831637f475427b30e21a986">cols</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>;</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  }</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a name="l00273"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a428bdc52bbf5188e1242208c298c10eb"> 273</a></span>  std::pair<Size, Size> <a class="code" href="classOpenMS_1_1Matrix.html#a428bdc52bbf5188e1242208c298c10eb">sizePair</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordflow">return</span> std::pair<Size, Size>(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>, <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  }</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span> </div>
<div class="line"><a name="l00282"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288"> 282</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>(<a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a7ed1f4eb50a0d5575514ea51e7c2fe03">row</a>, <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19">col</a>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (row >= <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, row, <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>);</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordflow">if</span> (col >= <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, col, <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span> <span class="preprocessor"></span> <span class="keywordflow">return</span> row * <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> + <a class="code" href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19">col</a>;</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  }</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> </div>
<div class="line"><a name="l00295"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a24e137f2e225cb58200287fcb6ddb5c8"> 295</a></span>  std::pair<Size, Size> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html#a24e137f2e225cb58200287fcb6ddb5c8">indexPair</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (index >= size()) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, index, size() - 1);</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> <span class="preprocessor"></span> <span class="keywordflow">return</span> std::pair<SizeType, SizeType>(index / <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>, index % <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  }</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00307"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a0c4e8b0c5e727bdcb3cb742a6c750009"> 307</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a0c4e8b0c5e727bdcb3cb742a6c750009">colIndex</a>(<a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (index >= size()) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, index, size() - 1);</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span> <span class="preprocessor"></span> <span class="keywordflow">return</span> index % <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>;</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  }</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> </div>
<div class="line"><a name="l00319"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#adfcef754b6b67b0e2168649f2e1f322a"> 319</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#adfcef754b6b67b0e2168649f2e1f322a">rowIndex</a>(<a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">index</a>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span> <span class="preprocessor">#ifdef OPENMS_DEBUG</span></div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> <span class="preprocessor"></span> <span class="keywordflow">if</span> (index >= size()) <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IndexOverflow.html">Exception::IndexOverflow</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, index, size() - 1);</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordflow">return</span> index / <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>;</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  }</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> </div>
<div class="line"><a name="l00333"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#ade79bea45fa446d17e5f6d0c4ca0572b"> 333</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1Matrix.html#ade79bea45fa446d17e5f6d0c4ca0572b">operator==</a>(<a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a> <span class="keyword">const</span>& rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> == rhs.<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>,</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <span class="stringliteral">"Matrices have different row sizes."</span>);</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> == rhs.<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>,</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <span class="stringliteral">"Matrices have different column sizes."</span>);</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="keywordflow">return</span> <span class="keyword">static_cast<</span>typename <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Matrix<Value>::Base</a> const&<span class="keyword">></span>(*this) == <span class="keyword">static_cast<</span>typename <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Matrix<Value>::Base</a> const&<span class="keyword">></span>(rhs);</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  }</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> </div>
<div class="line"><a name="l00347"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#afd5c336c2c77a7827dc01757e90010f9"> 347</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1Matrix.html#afd5c336c2c77a7827dc01757e90010f9">operator<</a>(<a class="code" href="classOpenMS_1_1Matrix.html">Matrix</a> <span class="keyword">const</span>& rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a> == rhs.<a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>,</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <span class="stringliteral">"Matrices have different row sizes."</span>);</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a> == rhs.<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>,</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="stringliteral">"Matrices have different column sizes."</span>);</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="keywordflow">return</span> <span class="keyword">static_cast<</span>typename <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Matrix<Value>::Base</a> const&<span class="keyword">></span>(*this) < <span class="keyword">static_cast<</span>typename <a class="code" href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">Matrix<Value>::Base</a> const&<span class="keyword">></span>(rhs);</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  <span class="keyword">template</span> <<span class="keywordtype">int</span> ROWS, <span class="keywordtype">int</span> COLS></div>
<div class="line"><a name="l00358"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#af0e8f32e17cc9ac00d311155d98fb4f0"> 358</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1Matrix.html#af0e8f32e17cc9ac00d311155d98fb4f0">setMatrix</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b">ValueType</a> matrix[ROWS][COLS])</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  {</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <a class="code" href="classOpenMS_1_1Matrix.html#a21b7326fb62d208413d2b63e0b07e68e">resize</a>(ROWS, COLS);</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> i = 0; i < this-><a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>; ++i)</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  {</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> j = 0; j < this-><a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>; ++j)</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  {</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <a class="code" href="classOpenMS_1_1Matrix.html#acea12a59f1afb620887946a432676603">setValue</a>(i, j, matrix[i][j]);</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  }</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  }</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  }</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span> </div>
<div class="line"><a name="l00377"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a4e31cd1f94c4407cf886bed2e1178526"> 377</a></span>  gsl_matrix* <a class="code" href="classOpenMS_1_1Matrix.html#a4e31cd1f94c4407cf886bed2e1178526">toGslMatrix</a>()</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  {</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  gsl_matrix* m_ptr = gsl_matrix_alloc(<a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>, <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>);</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span> </div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> i = 0; i < this-><a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>; ++i)</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  {</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">size_type</a> j = 0; j < this-><a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>; ++j)</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  {</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  gsl_matrix_set(m_ptr, i, j, (<span class="keywordtype">double</span>) (*<span class="keyword">this</span>)(i, j));</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  }</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  }</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="keywordflow">return</span> m_ptr;</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  }</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span> </div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span> </div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">rows_</a>;</div>
<div class="line"><a name="l00399"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7"> 399</a></span>  <a class="code" href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">SizeType</a> <a class="code" href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">cols_</a>;</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span> </div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  }; <span class="comment">// class Matrix</span></div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  <span class="comment">// template<> OPENMS_DLLAPI gsl_matrix* Matrix<double>::toGslMatrix();</span></div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="comment">// template<> OPENMS_DLLAPI gsl_matrix* Matrix<float>::toGslMatrix();</span></div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span> </div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Value></div>
<div class="line"><a name="l00413"></a><span class="lineno"><a class="line" href="namespaceOpenMS.html#a21f9e6fe70bb1ba507d9fbabd8947b59"> 413</a></span>  std::ostream& operator<<(std::ostream& os, const Matrix<Value>& matrix)</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  {</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">Matrix<Value>::size_type</a> size_type;</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <span class="keywordflow">for</span> (size_type i = 0; i < matrix.rows(); ++i)</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  {</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keywordflow">for</span> (size_type j = 0; j < matrix.cols(); ++j)</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  {</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  os << std::setprecision(6) << std::setw(6) << matrix(i, j) << <span class="charliteral">' '</span>;</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  }</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  os << std::endl;</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  }</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="keywordflow">return</span> os;</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  }</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span> </div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span> </div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> <span class="preprocessor">#endif // OPENMS_DATASTRUCTURES_MATRIX_H</span></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a758d02a5183e542558cd2f7ad65c683c"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a758d02a5183e542558cd2f7ad65c683c">OpenMS::Matrix::value_type</a></div><div class="ttdeci">Base::value_type value_type</div><div class="ttdef"><b>Definition:</b> Matrix.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a428bdc52bbf5188e1242208c298c10eb"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a428bdc52bbf5188e1242208c298c10eb">OpenMS::Matrix::sizePair</a></div><div class="ttdeci">std::pair< Size, Size > sizePair() const </div><div class="ttdef"><b>Definition:</b> Matrix.h:273</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a58c6c127053db92462dd71ea9be2501d"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a58c6c127053db92462dd71ea9be2501d">OpenMS::Matrix::ContainerType</a></div><div class="ttdeci">Base ContainerType</div><div class="ttdef"><b>Definition:</b> Matrix.h:109</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a67945f8464b125c988ded2dd2cfdf782"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a67945f8464b125c988ded2dd2cfdf782">OpenMS::Matrix::ConstIterator</a></div><div class="ttdeci">const_iterator ConstIterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:113</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a7689bbae07cd98b4f0808673d6b038f1"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a7689bbae07cd98b4f0808673d6b038f1">OpenMS::Matrix::AllocatorType</a></div><div class="ttdeci">allocator_type AllocatorType</div><div class="ttdef"><b>Definition:</b> Matrix.h:123</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a7a91b2f634e68c0554b1ff887bb27f8b"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a7a91b2f634e68c0554b1ff887bb27f8b">OpenMS::Matrix::ValueType</a></div><div class="ttdeci">value_type ValueType</div><div class="ttdef"><b>Definition:</b> Matrix.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a24e137f2e225cb58200287fcb6ddb5c8"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a24e137f2e225cb58200287fcb6ddb5c8">OpenMS::Matrix::indexPair</a></div><div class="ttdeci">std::pair< Size, Size > const indexPair(Size index) const </div><div class="ttdoc">Calculate the row and column from an index into the underlying vector. Note that Matrix uses the (row...</div><div class="ttdef"><b>Definition:</b> Matrix.h:295</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_adfcef754b6b67b0e2168649f2e1f322a"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#adfcef754b6b67b0e2168649f2e1f322a">OpenMS::Matrix::rowIndex</a></div><div class="ttdeci">SizeType rowIndex(SizeType index) const </div><div class="ttdoc">Calculate the row from an index into the underlying vector. Note that Matrix uses the (row...</div><div class="ttdef"><b>Definition:</b> Matrix.h:319</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aae29c5d03986d8fad8e7316c3a27a708"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aae29c5d03986d8fad8e7316c3a27a708">OpenMS::Matrix::const_reference</a></div><div class="ttdeci">Base::const_reference const_reference</div><div class="ttdef"><b>Definition:</b> Matrix.h:99</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ab178420c906c0d488065118ef11db05a"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ab178420c906c0d488065118ef11db05a">OpenMS::Matrix::ConstReference</a></div><div class="ttdeci">const_reference ConstReference</div><div class="ttdef"><b>Definition:</b> Matrix.h:118</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1IndexOverflow_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1IndexOverflow.html">OpenMS::Exception::IndexOverflow</a></div><div class="ttdoc">Int overflow exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:255</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a52cf141ce292251c9c6d7c22f296cbd5"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a52cf141ce292251c9c6d7c22f296cbd5">OpenMS::Matrix::Iterator</a></div><div class="ttdeci">iterator Iterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:115</div></div>
<div class="ttc" id="group__Conditions_html_ga45a74ea28109e7e1ed992fbd2ee97778"><div class="ttname"><a href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a></div><div class="ttdeci">#define OPENMS_PRECONDITION(condition, message)</div><div class="ttdoc">Precondition macro. </div><div class="ttdef"><b>Definition:</b> Macros.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aa2158dc2d25210ef557a40d3b8a521e3"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aa2158dc2d25210ef557a40d3b8a521e3">OpenMS::Matrix::pointer</a></div><div class="ttdeci">Base::pointer pointer</div><div class="ttdef"><b>Definition:</b> Matrix.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a0c4e8b0c5e727bdcb3cb742a6c750009"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a0c4e8b0c5e727bdcb3cb742a6c750009">OpenMS::Matrix::colIndex</a></div><div class="ttdeci">SizeType colIndex(SizeType index) const </div><div class="ttdoc">Calculate the column from an index into the underlying vector. Note that Matrix uses the (row...</div><div class="ttdef"><b>Definition:</b> Matrix.h:307</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ade79bea45fa446d17e5f6d0c4ca0572b"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ade79bea45fa446d17e5f6d0c4ca0572b">OpenMS::Matrix::operator==</a></div><div class="ttdeci">bool operator==(Matrix const &rhs) const </div><div class="ttdoc">Equality comparator. </div><div class="ttdef"><b>Definition:</b> Matrix.h:333</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aca3af0291e687921d32e8500b5070425"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aca3af0291e687921d32e8500b5070425">OpenMS::Matrix::Pointer</a></div><div class="ttdeci">pointer Pointer</div><div class="ttdef"><b>Definition:</b> Matrix.h:119</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a4e31cd1f94c4407cf886bed2e1178526"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a4e31cd1f94c4407cf886bed2e1178526">OpenMS::Matrix::toGslMatrix</a></div><div class="ttdeci">gsl_matrix * toGslMatrix()</div><div class="ttdoc">create gsl_matrix* </div><div class="ttdef"><b>Definition:</b> Matrix.h:377</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a659d9c674cacc2ffad5be2d79e52eb19"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19">OpenMS::Matrix::col</a></div><div class="ttdeci">container_type col(size_type const i) const </div><div class="ttdoc">Return the i-th column of the matrix as a vector. </div><div class="ttdef"><b>Definition:</b> Matrix.h:199</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a419f3ce215cc5ae6ab8bf596b7dbcd87"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a419f3ce215cc5ae6ab8bf596b7dbcd87">OpenMS::Matrix::ReverseIterator</a></div><div class="ttdeci">reverse_iterator ReverseIterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aa4336e7fd692b20bda7b7227fa9c9f55"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aa4336e7fd692b20bda7b7227fa9c9f55">OpenMS::Matrix::difference_type</a></div><div class="ttdeci">Base::difference_type difference_type</div><div class="ttdef"><b>Definition:</b> Matrix.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aad6c8e369db98adfa299ee7892f54f19"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aad6c8e369db98adfa299ee7892f54f19">OpenMS::Matrix::SizeType</a></div><div class="ttdeci">size_type SizeType</div><div class="ttdef"><b>Definition:</b> Matrix.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a21b7326fb62d208413d2b63e0b07e68e"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a21b7326fb62d208413d2b63e0b07e68e">OpenMS::Matrix::resize</a></div><div class="ttdeci">void resize(size_type i, size_type j, value_type value=value_type())</div><div class="ttdef"><b>Definition:</b> Matrix.h:247</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a2249c859d9c3503ec00d3a20fe963842"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a2249c859d9c3503ec00d3a20fe963842">OpenMS::Matrix::~Matrix</a></div><div class="ttdeci">~Matrix()</div><div class="ttdef"><b>Definition:</b> Matrix.h:154</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a8f2455726a56deea9d9a5217ed4a8ff0"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a8f2455726a56deea9d9a5217ed4a8ff0">OpenMS::Matrix::getValue</a></div><div class="ttdeci">const_reference getValue(size_type const i, size_type const j) const </div><div class="ttdef"><b>Definition:</b> Matrix.h:169</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a7ed1f4eb50a0d5575514ea51e7c2fe03"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a7ed1f4eb50a0d5575514ea51e7c2fe03">OpenMS::Matrix::row</a></div><div class="ttdeci">container_type row(size_type const i) const </div><div class="ttdoc">Return the i-th row of the matrix as a vector. </div><div class="ttdef"><b>Definition:</b> Matrix.h:185</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ae8163da75e575365fc14d7dbf3ea74de"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ae8163da75e575365fc14d7dbf3ea74de">OpenMS::Matrix::const_iterator</a></div><div class="ttdeci">Base::const_iterator const_iterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a307cd3058dfd843a0b3be83db64f549a"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a307cd3058dfd843a0b3be83db64f549a">OpenMS::Matrix::Matrix</a></div><div class="ttdeci">Matrix(const SizeType rows, const SizeType cols, ValueType value=ValueType())</div><div class="ttdef"><b>Definition:</b> Matrix.h:134</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a0bc3019d7d2ff6c73f261836bff0af3a"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a0bc3019d7d2ff6c73f261836bff0af3a">OpenMS::Matrix::iterator</a></div><div class="ttdeci">Base::iterator iterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:96</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_afd5c336c2c77a7827dc01757e90010f9"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#afd5c336c2c77a7827dc01757e90010f9">OpenMS::Matrix::operator<</a></div><div class="ttdeci">bool operator<(Matrix const &rhs) const </div><div class="ttdoc">Less-than comparator. Comparison is done lexicographically: first by row, then by column...</div><div class="ttdef"><b>Definition:</b> Matrix.h:347</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ab3683268fdb837f70f2789d9bed5d41f"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ab3683268fdb837f70f2789d9bed5d41f">OpenMS::Matrix::Base</a></div><div class="ttdeci">std::vector< Value > Base</div><div class="ttdef"><b>Definition:</b> Matrix.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a8b4002e4f5f4a07684f9e2c1bffcb248"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a8b4002e4f5f4a07684f9e2c1bffcb248">OpenMS::Matrix::resize</a></div><div class="ttdeci">void resize(std::pair< Size, Size > const &size_pair, value_type value=value_type())</div><div class="ttdef"><b>Definition:</b> Matrix.h:254</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_adf7e662c32853f825114543deaf8c119"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#adf7e662c32853f825114543deaf8c119">OpenMS::Matrix::operator=</a></div><div class="ttdeci">Matrix & operator=(const Matrix &rhs)</div><div class="ttdef"><b>Definition:</b> Matrix.h:146</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a54e1e41d0271084424540ff4482caa58"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a54e1e41d0271084424540ff4482caa58">OpenMS::Matrix::Reference</a></div><div class="ttdeci">reference Reference</div><div class="ttdef"><b>Definition:</b> Matrix.h:120</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a043b47e4782d89e9b4da9aa8e9584ae7"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a043b47e4782d89e9b4da9aa8e9584ae7">OpenMS::Matrix::cols_</a></div><div class="ttdeci">SizeType cols_</div><div class="ttdoc">Number of columns (width of a row) </div><div class="ttdef"><b>Definition:</b> Matrix.h:399</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aeb005fd1250a41fce857f8be85a46843"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aeb005fd1250a41fce857f8be85a46843">OpenMS::Matrix::rows</a></div><div class="ttdeci">SizeType rows() const </div><div class="ttdoc">Number of rows. </div><div class="ttdef"><b>Definition:</b> Matrix.h:262</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a8965490ee831637f475427b30e21a986"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a8965490ee831637f475427b30e21a986">OpenMS::Matrix::cols</a></div><div class="ttdeci">SizeType cols() const </div><div class="ttdoc">Number of columns. </div><div class="ttdef"><b>Definition:</b> Matrix.h:268</div></div>
<div class="ttc" id="Macros_8h_html"><div class="ttname"><a href="Macros_8h.html">Macros.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a16917878f2694c195d27c8ffe0a31a8b"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a16917878f2694c195d27c8ffe0a31a8b">OpenMS::Matrix::reverse_iterator</a></div><div class="ttdeci">Base::reverse_iterator reverse_iterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:97</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a1a16e5b9c5027972c0291942e6637847"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a1a16e5b9c5027972c0291942e6637847">OpenMS::Matrix::DifferenceType</a></div><div class="ttdeci">difference_type DifferenceType</div><div class="ttdef"><b>Definition:</b> Matrix.h:110</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_abaed3f9c23f38a6baedf841296fa931c"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#abaed3f9c23f38a6baedf841296fa931c">OpenMS::Matrix::reference</a></div><div class="ttdeci">Base::reference reference</div><div class="ttdef"><b>Definition:</b> Matrix.h:101</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a0a189ba1d918e84589e43ebfcea3cbc5"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a0a189ba1d918e84589e43ebfcea3cbc5">OpenMS::Matrix::allocator_type</a></div><div class="ttdeci">Base::allocator_type allocator_type</div><div class="ttdef"><b>Definition:</b> Matrix.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a0d932b1f5b5182beddc9840ea6e134c7"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a0d932b1f5b5182beddc9840ea6e134c7">OpenMS::Matrix::ConstReverseIterator</a></div><div class="ttdeci">const_reverse_iterator ConstReverseIterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a5c6959d322f63b4ff94a353b55df6e39"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a5c6959d322f63b4ff94a353b55df6e39">OpenMS::Matrix::operator()</a></div><div class="ttdeci">reference operator()(size_type const i, size_type const j)</div><div class="ttdef"><b>Definition:</b> Matrix.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ad71971384bb1a502065487173f283fc5"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ad71971384bb1a502065487173f283fc5">OpenMS::Matrix::size_type</a></div><div class="ttdeci">Base::size_type size_type</div><div class="ttdef"><b>Definition:</b> Matrix.h:92</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a9c38c837b63359ddc8ad90d54f53496b"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a9c38c837b63359ddc8ad90d54f53496b">OpenMS::Matrix::container_type</a></div><div class="ttdeci">Base container_type</div><div class="ttdef"><b>Definition:</b> Matrix.h:89</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_af0e8f32e17cc9ac00d311155d98fb4f0"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#af0e8f32e17cc9ac00d311155d98fb4f0">OpenMS::Matrix::setMatrix</a></div><div class="ttdeci">void setMatrix(const ValueType matrix[ROWS][COLS])</div><div class="ttdoc">set matrix to 2D arrays values </div><div class="ttdef"><b>Definition:</b> Matrix.h:358</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_acea12a59f1afb620887946a432676603"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#acea12a59f1afb620887946a432676603">OpenMS::Matrix::setValue</a></div><div class="ttdeci">void setValue(size_type const i, size_type const j, value_type value)</div><div class="ttdef"><b>Definition:</b> Matrix.h:179</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a5e1cd0b549354885f4b5718ee8e6ea05"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a5e1cd0b549354885f4b5718ee8e6ea05">OpenMS::Matrix::const_reverse_iterator</a></div><div class="ttdeci">Base::const_reverse_iterator const_reverse_iterator</div><div class="ttdef"><b>Definition:</b> Matrix.h:95</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_af96bf480205f9bb200ac177821892329"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#af96bf480205f9bb200ac177821892329">OpenMS::Matrix::getValue</a></div><div class="ttdeci">reference getValue(size_type const i, size_type const j)</div><div class="ttdef"><b>Definition:</b> Matrix.h:174</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_aa62617532d21383f8b78ace1cbbcea48"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#aa62617532d21383f8b78ace1cbbcea48">OpenMS::Matrix::Matrix</a></div><div class="ttdeci">Matrix(const Matrix &source)</div><div class="ttdef"><b>Definition:</b> Matrix.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a4f9cc30a6df38a12d5e06a8235712288"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a4f9cc30a6df38a12d5e06a8235712288">OpenMS::Matrix::index</a></div><div class="ttdeci">SizeType const index(SizeType row, SizeType col) const </div><div class="ttdoc">Calculate the index into the underlying vector from row and column. Note that Matrix uses the (row...</div><div class="ttdef"><b>Definition:</b> Matrix.h:282</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a3aede62f513da27e6f61ae7a972b4f96"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a3aede62f513da27e6f61ae7a972b4f96">OpenMS::Matrix::Matrix</a></div><div class="ttdeci">Matrix()</div><div class="ttdef"><b>Definition:</b> Matrix.h:128</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_ac8bb3912a3ce86b15842e79d0b421204"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#ac8bb3912a3ce86b15842e79d0b421204">OpenMS::Matrix::clear</a></div><div class="ttdeci">void clear()</div><div class="ttdef"><b>Definition:</b> Matrix.h:240</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html"><div class="ttname"><a href="classOpenMS_1_1Matrix.html">OpenMS::Matrix</a></div><div class="ttdoc">A two-dimensional matrix. Similar to std::vector, but uses a binary operator(,) for element access...</div><div class="ttdef"><b>Definition:</b> Matrix.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_a12ce96abb4c48284a7c1ffd2de816e7d"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#a12ce96abb4c48284a7c1ffd2de816e7d">OpenMS::Matrix::operator()</a></div><div class="ttdeci">const_reference operator()(size_type const i, size_type const j) const </div><div class="ttdef"><b>Definition:</b> Matrix.h:159</div></div>
<div class="ttc" id="classOpenMS_1_1Matrix_html_abefd2627230d15d4f7d82cb130c3a394"><div class="ttname"><a href="classOpenMS_1_1Matrix.html#abefd2627230d15d4f7d82cb130c3a394">OpenMS::Matrix::rows_</a></div><div class="ttdeci">SizeType rows_</div><div class="ttdoc">Number of rows (height of a column) </div><div class="ttdef"><b>Definition:</b> Matrix.h:397</div></div>
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