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openms 1.11.1-5
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<TITLE>MzTab.h File Reference</TITLE>
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<div class="textblock"><code>#include &lt;<a class="el" href="SVOutStream_8h_source.html">OpenMS/FORMAT/SVOutStream.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="Exception_8h_source.html">OpenMS/CONCEPT/Exception.h</a>&gt;</code><br/>
<code>#include &lt;map&gt;</code><br/>
<code>#include &lt;vector&gt;</code><br/>
<code>#include &lt;list&gt;</code><br/>
<code>#include &lt;algorithm&gt;</code><br/>
<code>#include &lt;<a class="el" href="StringList_8h_source.html">OpenMS/DATASTRUCTURES/StringList.h</a>&gt;</code><br/>
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<p><a href="MzTab_8h_source.html">Go to the source code of this file.</a></p>
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Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullAbleInterface.html">MzTabNullAbleInterface</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleInterface.html">MzTabNullNaNAndInfAbleInterface</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullAbleBase.html">MzTabNullAbleBase</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleBase.html">MzTabNullNaNAndInfAbleBase</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabDouble.html">MzTabDouble</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabDoubleList.html">MzTabDoubleList</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabInteger.html">MzTabInteger</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabBoolean.html">MzTabBoolean</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabString.html">MzTabString</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabParameter.html">MzTabParameter</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabParameterList.html">MzTabParameterList</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabStringList.html">MzTabStringList</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabModification.html">MzTabModification</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabModificationList.html">MzTabModificationList</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabSpectraRef.html">MzTabSpectraRef</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabSubIdMetaData.html">MzTabSubIdMetaData</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html">MzTabUnitIdMetaData</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html">MzTabProteinSectionRow</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html">MzTabPeptideSectionRow</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabSmallMoleculeSectionRow.html">MzTabSmallMoleculeSectionRow</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTab.html">MzTab</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Data model of <a class="el" href="classOpenMS_1_1MzTab.html" title="Data model of MzTab files. Please see the official MzTab specification at https://code.google.com/p/mztab/. ">MzTab</a> files. Please see the official <a class="el" href="classOpenMS_1_1MzTab.html" title="Data model of MzTab files. Please see the official MzTab specification at https://code.google.com/p/mztab/. ">MzTab</a> specification at <a href="https://code.google.com/p/mztab/">https://code.google.com/p/mztab/</a>.  <a href="classOpenMS_1_1MzTab.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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Namespaces</h2></td></tr>
<tr class="memitem:namespaceOpenMS"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html">OpenMS</a></td></tr>
<tr class="memdesc:namespaceOpenMS"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main OpenMS namespace. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr class="memitem:ac681a091df99c585b08e2a0ec9dd947e"><td class="memItemLeft" align="right" valign="top">typedef std::pair&lt; String, <br class="typebreak"/>
MzTabString &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac681a091df99c585b08e2a0ec9dd947e">MzTabOptionalColumnEntry</a></td></tr>
<tr class="separator:ac681a091df99c585b08e2a0ec9dd947e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a363e49ff9e8b2360fe2c5ea713174f9a"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
&lt; MzTabProteinSectionRow &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a363e49ff9e8b2360fe2c5ea713174f9a">MzTabProteinSectionRows</a></td></tr>
<tr class="separator:a363e49ff9e8b2360fe2c5ea713174f9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7175e41aff13b9e0fdcd0263b3168dd4"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
&lt; MzTabPeptideSectionRow &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a7175e41aff13b9e0fdcd0263b3168dd4">MzTabPeptideSectionRows</a></td></tr>
<tr class="separator:a7175e41aff13b9e0fdcd0263b3168dd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae00d564626c32fae4110f1a1a4744484"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
&lt; MzTabSmallMoleculeSectionRow &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ae00d564626c32fae4110f1a1a4744484">MzTabSmallMoleculeSectionRows</a></td></tr>
<tr class="separator:ae00d564626c32fae4110f1a1a4744484"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab138037234b4e184fcff64484bebc524"><td class="memItemLeft" align="right" valign="top">typedef std::map&lt; String, <br class="typebreak"/>
MzTabUnitIdMetaData &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab138037234b4e184fcff64484bebc524">MzTabMetaData</a></td></tr>
<tr class="separator:ab138037234b4e184fcff64484bebc524"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9f87de27dc814e7f89bcd4fce45f9a03"><td class="memItemLeft" align="right" valign="top">typedef std::map&lt; String, <br class="typebreak"/>
MzTabProteinSectionRows &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a9f87de27dc814e7f89bcd4fce45f9a03">MzTabProteinSectionData</a></td></tr>
<tr class="separator:a9f87de27dc814e7f89bcd4fce45f9a03"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abc4a193a549ea954836412f491fa9ad7"><td class="memItemLeft" align="right" valign="top">typedef std::map&lt; String, <br class="typebreak"/>
MzTabPeptideSectionRows &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#abc4a193a549ea954836412f491fa9ad7">MzTabPeptideSectionData</a></td></tr>
<tr class="separator:abc4a193a549ea954836412f491fa9ad7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5e9cf9a9228d42860755a3bf685b0222"><td class="memItemLeft" align="right" valign="top">typedef std::map&lt; String, <br class="typebreak"/>
MzTabSmallMoleculeSectionRows &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5e9cf9a9228d42860755a3bf685b0222">MzTabSmallMoleculeSectionData</a></td></tr>
<tr class="separator:a5e9cf9a9228d42860755a3bf685b0222"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="enum-members"></a>
Enumerations</h2></td></tr>
<tr class="memitem:gabfb38d02724e669a1f4b254e8ae24e46"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__FileIO.html#gabfb38d02724e669a1f4b254e8ae24e46">MzTabCellStateType</a> { <br/>
&#160;&#160;<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46adfafdfb46f1c3154b17bc7cf3b494a55">MZTAB_CELLSTATE_DEFAULT</a>, 
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a48160ee797ee7286e648c0eb425554cb">MZTAB_CELLSTATE_NULL</a>, 
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a7e2b2fd9f8495ea858101b8f6b72ff0f">MZTAB_CELLSTATE_NAN</a>, 
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a6465258af6efd7218d121b8216e3b686">MZTAB_CELLSTATE_INF</a>, 
<br/>
&#160;&#160;<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a337defb4c1e30fe3406a887131638714">SIZE_OF_MZTAB_CELLTYPE</a>
<br/>
 }</td></tr>
<tr class="memdesc:gabfb38d02724e669a1f4b254e8ae24e46"><td class="mdescLeft">&#160;</td><td class="mdescRight">Data model of MzTab files. Please see the official MzTab specification at <a href="https://code.google.com/p/mztab/">https://code.google.com/p/mztab/</a>.  <a href="group__FileIO.html#gabfb38d02724e669a1f4b254e8ae24e46">More...</a><br/></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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