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<div class="textblock"><code>#include &lt;<a class="el" href="PeakShape_8h_source.html">OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="Peak1D_8h_source.html">OpenMS/KERNEL/Peak1D.h</a>&gt;</code><br/>
<code>#include &lt;gsl/gsl_vector.h&gt;</code><br/>
<code>#include &lt;gsl/gsl_multifit_nlin.h&gt;</code><br/>
<code>#include &lt;gsl/gsl_blas.h&gt;</code><br/>
<code>#include &lt;iostream&gt;</code><br/>
<code>#include &lt;fstream&gt;</code><br/>
<code>#include &lt;vector&gt;</code><br/>
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<p><a href="OptimizePick_8h_source.html">Go to the source code of this file.</a></p>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class for the penalty factors used during the optimization.  <a href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OptimizePick.html">OptimizePick</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">This class provides the non-linear optimization of the peak parameters.  <a href="classOpenMS_1_1OptimizePick.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizePick_1_1Data.html">OptimizePick::Data</a></td></tr>
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<tr class="memdesc:namespaceOpenMS"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main OpenMS namespace. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:namespaceOpenMS_1_1OptimizationFunctions"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html">OpenMS::OptimizationFunctions</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1OptimizationFunctions"><td class="mdescLeft">&#160;</td><td class="mdescRight">Namespace for all functions and classes needed for the gsl levenberg-marquard algorithm. <br/></td></tr>
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<tr class="memitem:a1b5cab7fcfe8ad040fb7363dd14913f1"><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; Peak1D &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#a1b5cab7fcfe8ad040fb7363dd14913f1">RawDataVector</a></td></tr>
<tr class="memdesc:a1b5cab7fcfe8ad040fb7363dd14913f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Raw data vector type.  <a href="#a1b5cab7fcfe8ad040fb7363dd14913f1">More...</a><br/></td></tr>
<tr class="separator:a1b5cab7fcfe8ad040fb7363dd14913f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a335cff277df421bfa0ce8d2412f02134"><td class="memItemLeft" align="right" valign="top">typedef RawDataVector::iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a></td></tr>
<tr class="memdesc:a335cff277df421bfa0ce8d2412f02134"><td class="mdescLeft">&#160;</td><td class="mdescRight">Raw data iterator type.  <a href="#a335cff277df421bfa0ce8d2412f02134">More...</a><br/></td></tr>
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Functions</h2></td></tr>
<tr class="memitem:a3d21e47729faa48b51b02169c9383902"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#a3d21e47729faa48b51b02169c9383902">residual</a> (const gsl_vector *x, void *params, gsl_vector *f)</td></tr>
<tr class="memdesc:a3d21e47729faa48b51b02169c9383902"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluation of the target function for nonlinear optimization.  <a href="#a3d21e47729faa48b51b02169c9383902">More...</a><br/></td></tr>
<tr class="separator:a3d21e47729faa48b51b02169c9383902"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a906050fe19898e6bdaad3442b61c7199"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#a906050fe19898e6bdaad3442b61c7199">jacobian</a> (const gsl_vector *x, void *params, gsl_matrix *J)</td></tr>
<tr class="memdesc:a906050fe19898e6bdaad3442b61c7199"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the Jacobian of the residual, where each row of the matrix corresponds to a point in the data.  <a href="#a906050fe19898e6bdaad3442b61c7199">More...</a><br/></td></tr>
<tr class="separator:a906050fe19898e6bdaad3442b61c7199"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aacf12ce6c8657d87174c792d19c318bf"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#aacf12ce6c8657d87174c792d19c318bf">evaluate</a> (const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J)</td></tr>
<tr class="memdesc:aacf12ce6c8657d87174c792d19c318bf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Driver function for the evaluation of function and jacobian.  <a href="#aacf12ce6c8657d87174c792d19c318bf">More...</a><br/></td></tr>
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<tr class="memitem:a1221d2aacdd4ec15f8604ec526e500a4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html#a1221d2aacdd4ec15f8604ec526e500a4">printSignal</a> (const gsl_vector *x, void *param, float resolution=0.25)</td></tr>
<tr class="memdesc:a1221d2aacdd4ec15f8604ec526e500a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print all peak shapes.  <a href="#a1221d2aacdd4ec15f8604ec526e500a4">More...</a><br/></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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