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<a href="PILISCrossValidation_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
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<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Andreas Bertsch $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_ANALYSIS_ID_PILISCROSSVALIDATION_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_ID_PILISCROSSVALIDATION_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="StandardTypes_8h.html">OpenMS/KERNEL/StandardTypes.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DefaultParamHandler_8h.html">OpenMS/DATASTRUCTURES/DefaultParamHandler.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;{</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;  <span class="keyword">class </span>PeakSpectrumCompareFunctor;</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;  <span class="keyword">class </span>PILISModel;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PILISCrossValidation.html">   58</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a> :</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;  {</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">   67</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">Peptide</a></div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    {</div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">   69</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">Peptide</a>() :</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;        charge(0)</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;      {</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;      }</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;</div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a">   75</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a">Peptide</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">Peptide</a> &amp; rhs) :</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;        sequence(rhs.sequence),</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        charge(rhs.charge),</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        spec(rhs.spec),</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;        hits(rhs.hits)</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;      {</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;      }</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a96c843a7bfacbdcb4c1a4e36a9aa7314">   83</a></span>&#160;      <span class="keyword">virtual</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a96c843a7bfacbdcb4c1a4e36a9aa7314">~Peptide</a>()</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;      {</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;      }</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;</div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6">   87</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">Peptide</a> &amp; <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">Peptide</a> &amp; rhs)</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;      {</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;        <span class="keywordflow">if</span> (&amp;rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        {</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;          sequence = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">sequence</a>;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;          charge = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a8253a7962ca1c79b71e6af96589b7720">charge</a>;</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;          spec = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a3185fc216d61c94beecf5066603207c4">spec</a>;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;          hits = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a076c85b4f9fce1c116b968eaa440759d">hits</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        }</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;      }</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;</div>
<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">   99</a></span>&#160;      <a class="code" href="classOpenMS_1_1AASequence.html">AASequence</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">sequence</a>;</div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a8253a7962ca1c79b71e6af96589b7720">  100</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a8253a7962ca1c79b71e6af96589b7720">charge</a>;</div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a3185fc216d61c94beecf5066603207c4">  101</a></span>&#160;      <a class="code" href="classOpenMS_1_1MSSpectrum.html">RichPeakSpectrum</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a3185fc216d61c94beecf5066603207c4">spec</a>;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a076c85b4f9fce1c116b968eaa440759d">  103</a></span>&#160;      std::vector&lt;PeptideHit&gt; <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a076c85b4f9fce1c116b968eaa440759d">hits</a>;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;</div>
<div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a91dc43b41fb2837df30b274718f1d086">  105</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a91dc43b41fb2837df30b274718f1d086">operator&lt;</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">Peptide</a> &amp; peptide)<span class="keyword"> const</span></div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        <span class="keywordflow">if</span> (sequence &lt; peptide.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">sequence</a>)</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        {</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;          <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        }</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;        {</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;          <span class="keywordflow">if</span> (sequence == peptide.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">sequence</a>)</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;          {</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;            <span class="keywordflow">return</span> charge &lt; peptide.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a8253a7962ca1c79b71e6af96589b7720">charge</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;          }</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;        }</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      }</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;    };</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;</div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">  126</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">Option</a></div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    {</div>
<div class="line"><a name="l00129"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7">  129</a></span>&#160;      <span class="keyword">enum</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a></div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      {</div>
<div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7afd5a5f51ce25953f3db2c7e93eb7864a">  131</a></span>&#160;        INT = 0,</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7a33465d1d419b1074fb259ef444609e92">  132</a></span>&#160;        DOUBLE = 1,</div>
<div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7ae663dbb8f8244e122acb5bd6b2c216e1">  133</a></span>&#160;        BOOL = 2,</div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7ac96deda24d4d92ae647f006129c57187">  134</a></span>&#160;        STRINGLIST = 3</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;      };</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;</div>
<div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aaab802d5beca2042f1be3949b3b18ad7">  138</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aaab802d5beca2042f1be3949b3b18ad7">Option</a>() :</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        type(INT),</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;        int_min(0),</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;        int_max(0),</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;        int_stepsize(0),</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;        dbl_min(0),</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;        dbl_max(0),</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;        dbl_stepsize(0)</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;      {</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;      }</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;</div>
<div class="line"><a name="l00150"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a822454053a1753bf918c2fb0758f8df6">  150</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a822454053a1753bf918c2fb0758f8df6">Option</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">Option</a> &amp; rhs) :</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;        type(rhs.type),</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;        int_min(rhs.int_min),</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;        int_max(rhs.int_max),</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        int_stepsize(rhs.int_stepsize),</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;        dbl_min(rhs.dbl_min),</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        dbl_max(rhs.dbl_max),</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;        dbl_stepsize(rhs.dbl_stepsize)</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;      {</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;      }</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;</div>
<div class="line"><a name="l00162"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a41d41c2e32ddde6fbc35c23a29ba600c">  162</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a41d41c2e32ddde6fbc35c23a29ba600c">Option</a>(<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a> t, <a class="code" href="classdouble.html">DoubleReal</a> min, <a class="code" href="classdouble.html">DoubleReal</a> max, <a class="code" href="classdouble.html">DoubleReal</a> stepsize)</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;      {</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;        type = t;</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;        <span class="keywordflow">if</span> (type == INT)</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;        {</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;          int_min = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>)min;</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;          int_max = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>)max;</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;          int_stepsize = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>)stepsize;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;        }</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;        {</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;          <span class="keywordflow">if</span> (type == DOUBLE)</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;          {</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;            dbl_min = min;</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;            dbl_max = max;</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;            dbl_stepsize = stepsize;</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;          }</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;          <span class="keywordflow">else</span></div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;          {</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;            std::cerr &lt;&lt; <span class="stringliteral">&quot;Type: &quot;</span> &lt;&lt; t &lt;&lt; <span class="stringliteral">&quot; is not known!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;          }</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        }</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;      }</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#af5fb3f3b8ac325ae52009639c87e77bd">  187</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">Option</a> &amp; <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#af5fb3f3b8ac325ae52009639c87e77bd">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">Option</a> &amp; rhs)</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;      {</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <span class="keywordflow">if</span> (&amp;rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;        {</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;          type = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ab6f4e6d3fde00ce906e46494f60dfe7a">type</a>;</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;          int_min = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a71d4acffa85779e88033670c523e8ee1">int_min</a>;</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;          int_max = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aa23503ed939b9d0e99bb3b89806309b4">int_max</a>;</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;          int_stepsize = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ac20ecc53d6ff750b1f017aa4181e3f06">int_stepsize</a>;</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;          dbl_min = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a46d412418567c65dae6f18c790cc984a">dbl_min</a>;</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;          dbl_max = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a511527c377fd0d6d933692aded9781be">dbl_max</a>;</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;          dbl_stepsize = rhs.<a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a9ee8b783042ea8c887fc7ef9d388e2e0">dbl_stepsize</a>;</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        }</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;      }</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;</div>
<div class="line"><a name="l00202"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ab6f4e6d3fde00ce906e46494f60dfe7a">  202</a></span>&#160;      <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ab6f4e6d3fde00ce906e46494f60dfe7a">type</a>;</div>
<div class="line"><a name="l00203"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a71d4acffa85779e88033670c523e8ee1">  203</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a71d4acffa85779e88033670c523e8ee1">int_min</a>;</div>
<div class="line"><a name="l00204"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aa23503ed939b9d0e99bb3b89806309b4">  204</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aa23503ed939b9d0e99bb3b89806309b4">int_max</a>;</div>
<div class="line"><a name="l00205"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ac20ecc53d6ff750b1f017aa4181e3f06">  205</a></span>&#160;      <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ac20ecc53d6ff750b1f017aa4181e3f06">int_stepsize</a>;</div>
<div class="line"><a name="l00206"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a46d412418567c65dae6f18c790cc984a">  206</a></span>&#160;      <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a46d412418567c65dae6f18c790cc984a">dbl_min</a>;</div>
<div class="line"><a name="l00207"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a511527c377fd0d6d933692aded9781be">  207</a></span>&#160;      <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a511527c377fd0d6d933692aded9781be">dbl_max</a>;</div>
<div class="line"><a name="l00208"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a9ee8b783042ea8c887fc7ef9d388e2e0">  208</a></span>&#160;      <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a9ee8b783042ea8c887fc7ef9d388e2e0">dbl_stepsize</a>;</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;    };</div>
<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;</div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a>();</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a> &amp; rhs);</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a>();</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a> &amp; rhs);</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;    <span class="keywordtype">void</span> setOptions(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Map.html">Map&lt;String, Option&gt;</a> &amp; rhs)</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    {</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;      cv_options_ = rhs;</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    }</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;</div>
<div class="line"><a name="l00238"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PILISCrossValidation.html#aafead117353621e9917a873670e166a3">  238</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1PILISCrossValidation.html#aafead117353621e9917a873670e166a3">setOption</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; name, <span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">Option</a> &amp; option)</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    {</div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;      cv_options_[name] = option;</div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;    }</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;    <span class="keywordtype">void</span> apply(<a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; PILIS_param, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PILISModel.html">PILISModel</a> &amp; base_model, <span class="keyword">const</span> std::vector&lt;Peptide&gt; &amp; peptides);</div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> scoreHits(<span class="keyword">const</span> std::vector&lt;std::vector&lt;std::vector&lt;RichPeakSpectrum&gt; &gt; &gt; &amp; sim_spectra, <span class="keyword">const</span> std::vector&lt;std::vector&lt;RichPeakSpectrum&gt; &gt; &amp; exp_spectra);</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;</div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;</div>
<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> scoreSpectra_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">RichPeakSpectrum</a> &amp; spec1, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">RichPeakSpectrum</a> &amp; spec2);</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;</div>
<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <span class="keywordtype">void</span> partition_(std::vector&lt;std::vector&lt;Peptide&gt; &gt; &amp; parts, <span class="keyword">const</span> std::vector&lt;Peptide&gt; &amp; source);</div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;</div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    <span class="keywordtype">void</span> generateParameters_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; param, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Map.html">Map&lt;String, Option&gt;</a> &amp; options, std::vector&lt;Param&gt; &amp; parameters);</div>
<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;</div>
<div class="line"><a name="l00258"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PILISCrossValidation.html#ab0beaddcc709068e80ab05f6e796799e">  258</a></span>&#160;    <a class="code" href="classOpenMS_1_1Map.html">Map&lt;String, Option&gt;</a> <a class="code" href="classOpenMS_1_1PILISCrossValidation.html#ab0beaddcc709068e80ab05f6e796799e">cv_options_</a>;</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;</div>
<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    <span class="keywordtype">void</span> updateMembers_();</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;</div>
<div class="line"><a name="l00262"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PILISCrossValidation.html#acb219042efcec72accd98aa1834b4411">  262</a></span>&#160;    <a class="code" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> * <a class="code" href="classOpenMS_1_1PILISCrossValidation.html#acb219042efcec72accd98aa1834b4411">pscf_</a>;</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;  };</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;}</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;</div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_ad680a5cf07955d6cb2c377af9938a36a"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a">OpenMS::PILISCrossValidation::Peptide::Peptide</a></div><div class="ttdeci">Peptide(const Peptide &amp;rhs)</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:75</div></div>
<div class="ttc" id="StandardTypes_8h_html"><div class="ttname"><a href="StandardTypes_8h.html">StandardTypes.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_ac20ecc53d6ff750b1f017aa4181e3f06"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ac20ecc53d6ff750b1f017aa4181e3f06">OpenMS::PILISCrossValidation::Option::int_stepsize</a></div><div class="ttdeci">Int int_stepsize</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:205</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_af3d98c49f2fc25f60fc4156aa5b01df6"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6">OpenMS::PILISCrossValidation::Peptide::operator=</a></div><div class="ttdeci">Peptide &amp; operator=(const Peptide &amp;rhs)</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:87</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a9ee8b783042ea8c887fc7ef9d388e2e0"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a9ee8b783042ea8c887fc7ef9d388e2e0">OpenMS::PILISCrossValidation::Option::dbl_stepsize</a></div><div class="ttdeci">DoubleReal dbl_stepsize</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:208</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a91dc43b41fb2837df30b274718f1d086"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a91dc43b41fb2837df30b274718f1d086">OpenMS::PILISCrossValidation::Peptide::operator&lt;</a></div><div class="ttdeci">bool operator&lt;(const Peptide &amp;peptide) const </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:105</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1PILISCrossValidation_html_acb219042efcec72accd98aa1834b4411"><div class="ttname"><a href="classOpenMS_1_1PILISCrossValidation.html#acb219042efcec72accd98aa1834b4411">OpenMS::PILISCrossValidation::pscf_</a></div><div class="ttdeci">PeakSpectrumCompareFunctor * pscf_</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:262</div></div>
<div class="ttc" id="classOpenMS_1_1AASequence_html"><div class="ttname"><a href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a></div><div class="ttdoc">Representation of a peptide/protein sequence. </div><div class="ttdef"><b>Definition:</b> AASequence.h:84</div></div>
<div class="ttc" id="DefaultParamHandler_8h_html"><div class="ttname"><a href="DefaultParamHandler_8h.html">DefaultParamHandler.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a46d412418567c65dae6f18c790cc984a"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a46d412418567c65dae6f18c790cc984a">OpenMS::PILISCrossValidation::Option::dbl_min</a></div><div class="ttdeci">DoubleReal dbl_min</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:206</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a8253a7962ca1c79b71e6af96589b7720"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a8253a7962ca1c79b71e6af96589b7720">OpenMS::PILISCrossValidation::Peptide::charge</a></div><div class="ttdeci">Int charge</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:100</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html">OpenMS::PILISCrossValidation::Peptide</a></div><div class="ttdoc">this struct represents a peptide spectrum pair </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:67</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_af5fb3f3b8ac325ae52009639c87e77bd"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#af5fb3f3b8ac325ae52009639c87e77bd">OpenMS::PILISCrossValidation::Option::operator=</a></div><div class="ttdeci">Option &amp; operator=(const Option &amp;rhs)</div><div class="ttdoc">assignment operator </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:187</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a5ba6cc3d9413c86a8a014cff35812445"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a5ba6cc3d9413c86a8a014cff35812445">OpenMS::PILISCrossValidation::Peptide::sequence</a></div><div class="ttdeci">AASequence sequence</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:99</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum&lt; RichPeak1D &gt;</a></div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a3185fc216d61c94beecf5066603207c4"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a3185fc216d61c94beecf5066603207c4">OpenMS::PILISCrossValidation::Peptide::spec</a></div><div class="ttdeci">RichPeakSpectrum spec</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:101</div></div>
<div class="ttc" id="classOpenMS_1_1PILISCrossValidation_html_ab0beaddcc709068e80ab05f6e796799e"><div class="ttname"><a href="classOpenMS_1_1PILISCrossValidation.html#ab0beaddcc709068e80ab05f6e796799e">OpenMS::PILISCrossValidation::cv_options_</a></div><div class="ttdeci">Map&lt; String, Option &gt; cv_options_</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:258</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a71d4acffa85779e88033670c523e8ee1"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a71d4acffa85779e88033670c523e8ee1">OpenMS::PILISCrossValidation::Option::int_min</a></div><div class="ttdeci">Int int_min</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:203</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a2a1148f0758cc3243a132589714555b0"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">OpenMS::PILISCrossValidation::Peptide::Peptide</a></div><div class="ttdeci">Peptide()</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:69</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html">OpenMS::PILISCrossValidation::Option</a></div><div class="ttdoc">This struct represents a cross validation option. </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:126</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a1d1cfd8ffb84e947f82999c682b666a7"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a1d1cfd8ffb84e947f82999c682b666a7">OpenMS::PILISCrossValidation::Option::Type</a></div><div class="ttdeci">Type</div><div class="ttdoc">Type of the parameters. </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:129</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a822454053a1753bf918c2fb0758f8df6"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a822454053a1753bf918c2fb0758f8df6">OpenMS::PILISCrossValidation::Option::Option</a></div><div class="ttdeci">Option(const Option &amp;rhs)</div><div class="ttdoc">copy constructor </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:150</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a96c843a7bfacbdcb4c1a4e36a9aa7314"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a96c843a7bfacbdcb4c1a4e36a9aa7314">OpenMS::PILISCrossValidation::Peptide::~Peptide</a></div><div class="ttdeci">virtual ~Peptide()</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1PILISModel_html"><div class="ttname"><a href="classOpenMS_1_1PILISModel.html">OpenMS::PILISModel</a></div><div class="ttdoc">This class implements the simulation of the spectra from PILIS. </div><div class="ttdef"><b>Definition:</b> PILISModel.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1PILISCrossValidation_html_aafead117353621e9917a873670e166a3"><div class="ttname"><a href="classOpenMS_1_1PILISCrossValidation.html#aafead117353621e9917a873670e166a3">OpenMS::PILISCrossValidation::setOption</a></div><div class="ttdeci">void setOption(const String &amp;name, const Option &amp;option)</div><div class="ttdoc">sets a option to be used for the cross validation </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:238</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_aa23503ed939b9d0e99bb3b89806309b4"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aa23503ed939b9d0e99bb3b89806309b4">OpenMS::PILISCrossValidation::Option::int_max</a></div><div class="ttdeci">Int int_max</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:204</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a41d41c2e32ddde6fbc35c23a29ba600c"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a41d41c2e32ddde6fbc35c23a29ba600c">OpenMS::PILISCrossValidation::Option::Option</a></div><div class="ttdeci">Option(Type t, DoubleReal min, DoubleReal max, DoubleReal stepsize)</div><div class="ttdoc">detailed constructors </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:162</div></div>
<div class="ttc" id="classOpenMS_1_1PeakSpectrumCompareFunctor_html"><div class="ttname"><a href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">OpenMS::PeakSpectrumCompareFunctor</a></div><div class="ttdoc">Base class for compare functors of spectra, that return a similiarity value for two spectra...</div><div class="ttdef"><b>Definition:</b> PeakSpectrumCompareFunctor.h:53</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_aaab802d5beca2042f1be3949b3b18ad7"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#aaab802d5beca2042f1be3949b3b18ad7">OpenMS::PILISCrossValidation::Option::Option</a></div><div class="ttdeci">Option()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:138</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_ab6f4e6d3fde00ce906e46494f60dfe7a"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#ab6f4e6d3fde00ce906e46494f60dfe7a">OpenMS::PILISCrossValidation::Option::type</a></div><div class="ttdeci">Type type</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:202</div></div>
<div class="ttc" id="classOpenMS_1_1DefaultParamHandler_html"><div class="ttname"><a href="classOpenMS_1_1DefaultParamHandler.html">OpenMS::DefaultParamHandler</a></div><div class="ttdoc">A base class for all classes handling default parameters. </div><div class="ttdef"><b>Definition:</b> DefaultParamHandler.h:90</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Peptide_html_a076c85b4f9fce1c116b968eaa440759d"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a076c85b4f9fce1c116b968eaa440759d">OpenMS::PILISCrossValidation::Peptide::hits</a></div><div class="ttdeci">std::vector&lt; PeptideHit &gt; hits</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:103</div></div>
<div class="ttc" id="structOpenMS_1_1PILISCrossValidation_1_1Option_html_a511527c377fd0d6d933692aded9781be"><div class="ttname"><a href="structOpenMS_1_1PILISCrossValidation_1_1Option.html#a511527c377fd0d6d933692aded9781be">OpenMS::PILISCrossValidation::Option::dbl_max</a></div><div class="ttdeci">DoubleReal dbl_max</div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:207</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map</a></div><div class="ttdoc">Map class based on the STL map (containing serveral convenience functions) </div><div class="ttdef"><b>Definition:</b> Map.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1PILISCrossValidation_html"><div class="ttname"><a href="classOpenMS_1_1PILISCrossValidation.html">OpenMS::PILISCrossValidation</a></div><div class="ttdoc">Implementation of a cross valdidation training for the PILIS model. </div><div class="ttdef"><b>Definition:</b> PILISCrossValidation.h:58</div></div>
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