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<a href="PeakShape_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Alexandra Zerck $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Eva Lange $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_RAW2PEAK_PEAKSHAPE_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_RAW2PEAK_PEAKSHAPE_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <cmath></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="Types_8h.html">OpenMS/CONCEPT/Types.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="MSSpectrum_8h.html">OpenMS/KERNEL/MSSpectrum.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> {</div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html"> 51</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  {</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7"> 68</a></span>  <span class="keyword">enum</span> <a class="code" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  {</div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a6ba0b50b9f0f84a5ad13827c57240f76"> 70</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a6ba0b50b9f0f84a5ad13827c57240f76">LORENTZ_PEAK</a>,</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a13a1459b1209f4aac3d4bf4a6c184f14"> 71</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a13a1459b1209f4aac3d4bf4a6c184f14">SECH_PEAK</a>,</div>
<div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a605159e8a4c32319fd69b5d151369d93"> 72</a></span>  UNDEFINED</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  };</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923"> 76</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<>::const_iterator</a> <a class="code" href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923">PeakIterator</a>;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#af3d4e7b137cfecc5b93a7dbeb997db15"> 79</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#af3d4e7b137cfecc5b93a7dbeb997db15">PeakShape</a>() :</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  height(0),</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  mz_position(0),</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  left_width(0),</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  right_width(0),</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  area(0),</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  r_value(0),</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  signal_to_noise(0.),</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  type(UNDEFINED)</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  {</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  left_endpoint_ = exp_.end();</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  right_endpoint_ = exp_.end();</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  }</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a>(<a class="code" href="classdouble.html">DoubleReal</a> height_, <a class="code" href="classdouble.html">DoubleReal</a> mz_position_, <a class="code" href="classdouble.html">DoubleReal</a> left_width_, <a class="code" href="classdouble.html">DoubleReal</a> right_width_, <a class="code" href="classdouble.html">DoubleReal</a> area_, <a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> left_, <a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> right_, Type type_);</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a>(<a class="code" href="classdouble.html">DoubleReal</a> height_, <a class="code" href="classdouble.html">DoubleReal</a> mz_position_, <a class="code" href="classdouble.html">DoubleReal</a> left_width_, <a class="code" href="classdouble.html">DoubleReal</a> right_width_, <a class="code" href="classdouble.html">DoubleReal</a> area_, Type type_);</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & rhs);</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a83c0fe1aa378a13a95703f1729ce27b2"> 104</a></span>  <span class="keyword">virtual</span> <a class="code" href="structOpenMS_1_1PeakShape.html#a83c0fe1aa378a13a95703f1729ce27b2">~PeakShape</a>()</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  {</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  }</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & operator=(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & rhs);</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="comment">//Equality operator</span></div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="comment">//Equality operator</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordtype">bool</span> operator!=(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <a class="code" href="classdouble.html">DoubleReal</a> operator()(<a class="code" href="classdouble.html">DoubleReal</a> x) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <a class="code" href="classdouble.html">DoubleReal</a> getSymmetricMeasure() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <a class="code" href="classdouble.html">DoubleReal</a> getFWHM() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="keywordtype">bool</span> iteratorsSet() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> </div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> getLeftEndpoint() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <span class="keywordtype">void</span> setLeftEndpoint(<a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> left_endpoint);</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> getRightEndpoint() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keywordtype">void</span> setRightEndpoint(<a class="code" href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">PeakIterator</a> right_endpoint);</div>
<div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a5343d7f469d61e6d3f4808a609094175"> 131</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#a5343d7f469d61e6d3f4808a609094175">height</a>;</div>
<div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a0b633e3762805bc447c451f262a8f405"> 133</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#a0b633e3762805bc447c451f262a8f405">mz_position</a>;</div>
<div class="line"><a name="l00135"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a6bd93679898a199380f450a9351fde28"> 135</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#a6bd93679898a199380f450a9351fde28">left_width</a>;</div>
<div class="line"><a name="l00137"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#aee68061fb00b7a84b354bac91e492039"> 137</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#aee68061fb00b7a84b354bac91e492039">right_width</a>;</div>
<div class="line"><a name="l00139"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#ab711e0c5eaae04e02713b6cbd5a6a954"> 139</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#ab711e0c5eaae04e02713b6cbd5a6a954">area</a>;</div>
<div class="line"><a name="l00144"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#acec96c76b28be5f89d2966092930e242"> 144</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#acec96c76b28be5f89d2966092930e242">r_value</a>;</div>
<div class="line"><a name="l00146"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#acfd893e5679e13dbae94440f76fa3dbd"> 146</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1PeakShape.html#acfd893e5679e13dbae94440f76fa3dbd">signal_to_noise</a>;</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#ab6f4e6d3fde00ce906e46494f60dfe7a"> 149</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7">Type</a> <a class="code" href="structOpenMS_1_1PeakShape.html#ab6f4e6d3fde00ce906e46494f60dfe7a">type</a>;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> </div>
<div class="line"><a name="l00154"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PeakShape_1_1PositionLess.html"> 154</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1PeakShape_1_1PositionLess.html">PositionLess</a></div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  {</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classOpenMS_1_1PeakShape_1_1PositionLess.html#adf694fe80e838d9e0d7509670bcbb68c"> 158</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1PeakShape_1_1PositionLess.html#adf694fe80e838d9e0d7509670bcbb68c">operator()</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & a, <span class="keyword">const</span> <a class="code" href="structOpenMS_1_1PeakShape.html">PeakShape</a> & b)</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  {</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">return</span> a.<a class="code" href="structOpenMS_1_1PeakShape.html#a0b633e3762805bc447c451f262a8f405">mz_position</a> < b.<a class="code" href="structOpenMS_1_1PeakShape.html#a0b633e3762805bc447c451f262a8f405">mz_position</a>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  }</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  };</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#abcc8b3e1ca93a4a4a5d23aa09f78f8ce"> 166</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923">PeakIterator</a> <a class="code" href="structOpenMS_1_1PeakShape.html#abcc8b3e1ca93a4a4a5d23aa09f78f8ce">left_endpoint_</a>;</div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a8c4f642d031eb6b58645c8664a4a6edc"> 168</a></span>  <a class="code" href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923">PeakIterator</a> <a class="code" href="structOpenMS_1_1PeakShape.html#a8c4f642d031eb6b58645c8664a4a6edc">right_endpoint_</a>;</div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#abc2dae237eadd7367b32b97a695eee69"> 170</a></span>  <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<></a> <a class="code" href="structOpenMS_1_1PeakShape.html#abc2dae237eadd7367b32b97a695eee69">exp_</a>;</div>
<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#a2dfb6cdff8be09761c34083959f62e51"> 172</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1PeakShape.html#a2dfb6cdff8be09761c34083959f62e51">left_iterator_set_</a>;</div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="structOpenMS_1_1PeakShape.html#ad854a86aa9b4a56b0d270ac1eee81174"> 174</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1PeakShape.html#ad854a86aa9b4a56b0d270ac1eee81174">right_iterator_set_</a>;</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  };</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> <span class="preprocessor">#endif</span></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html">OpenMS::PeakShape</a></div><div class="ttdoc">Internal representation of a peak shape (used by the PeakPickerCWT) </div><div class="ttdef"><b>Definition:</b> PeakShape.h:51</div></div>
<div class="ttc" id="Types_8h_html"><div class="ttname"><a href="Types_8h.html">Types.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a83c0fe1aa378a13a95703f1729ce27b2"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a83c0fe1aa378a13a95703f1729ce27b2">OpenMS::PeakShape::~PeakShape</a></div><div class="ttdeci">virtual ~PeakShape()</div><div class="ttdoc">Destructor. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1PeakShape_1_1PositionLess_html"><div class="ttname"><a href="classOpenMS_1_1PeakShape_1_1PositionLess.html">OpenMS::PeakShape::PositionLess</a></div><div class="ttdoc">Comparison of mz_positions. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:154</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a5343d7f469d61e6d3f4808a609094175"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a5343d7f469d61e6d3f4808a609094175">OpenMS::PeakShape::height</a></div><div class="ttdeci">DoubleReal height</div><div class="ttdoc">Maximum intensity of the peak shape. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:131</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_abc2dae237eadd7367b32b97a695eee69"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#abc2dae237eadd7367b32b97a695eee69">OpenMS::PeakShape::exp_</a></div><div class="ttdeci">MSSpectrum exp_</div><div class="ttdoc">Needed for initialisation of endpoint iterators. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:170</div></div>
<div class="ttc" id="namespaceOpenMS_1_1OptimizationFunctions_html_a335cff277df421bfa0ce8d2412f02134"><div class="ttname"><a href="namespaceOpenMS_1_1OptimizationFunctions.html#a335cff277df421bfa0ce8d2412f02134">OpenMS::OptimizationFunctions::PeakIterator</a></div><div class="ttdeci">RawDataVector::iterator PeakIterator</div><div class="ttdoc">Raw data iterator type. </div><div class="ttdef"><b>Definition:</b> OptimizePick.h:61</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a2dfb6cdff8be09761c34083959f62e51"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a2dfb6cdff8be09761c34083959f62e51">OpenMS::PeakShape::left_iterator_set_</a></div><div class="ttdeci">bool left_iterator_set_</div><div class="ttdoc">flag if left endpoint iterator differs from default value </div><div class="ttdef"><b>Definition:</b> PeakShape.h:172</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_af3d4e7b137cfecc5b93a7dbeb997db15"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#af3d4e7b137cfecc5b93a7dbeb997db15">OpenMS::PeakShape::PeakShape</a></div><div class="ttdeci">PeakShape()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:79</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_ad854a86aa9b4a56b0d270ac1eee81174"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#ad854a86aa9b4a56b0d270ac1eee81174">OpenMS::PeakShape::right_iterator_set_</a></div><div class="ttdeci">bool right_iterator_set_</div><div class="ttdoc">flag if left endpoint iterator differs from default value </div><div class="ttdef"><b>Definition:</b> PeakShape.h:174</div></div>
<div class="ttc" id="MSSpectrum_8h_html"><div class="ttname"><a href="MSSpectrum_8h.html">MSSpectrum.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a></div><div class="ttdoc">The representation of a 1D spectrum. </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:67</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a1d1cfd8ffb84e947f82999c682b666a7"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7">OpenMS::PeakShape::Type</a></div><div class="ttdeci">Type</div><div class="ttdoc">Peak shape type (asymmetric lorentzian or asymmetric hyperbolic secans squared). </div><div class="ttdef"><b>Definition:</b> PeakShape.h:68</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a8c4f642d031eb6b58645c8664a4a6edc"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a8c4f642d031eb6b58645c8664a4a6edc">OpenMS::PeakShape::right_endpoint_</a></div><div class="ttdeci">PeakIterator right_endpoint_</div><div class="ttdoc">Right peak endpoint in the data. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:168</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a1d1cfd8ffb84e947f82999c682b666a7a6ba0b50b9f0f84a5ad13827c57240f76"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a6ba0b50b9f0f84a5ad13827c57240f76">OpenMS::PeakShape::LORENTZ_PEAK</a></div><div class="ttdef"><b>Definition:</b> PeakShape.h:70</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_aee68061fb00b7a84b354bac91e492039"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#aee68061fb00b7a84b354bac91e492039">OpenMS::PeakShape::right_width</a></div><div class="ttdeci">DoubleReal right_width</div><div class="ttdoc">Right width parameter. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:137</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_ab6f4e6d3fde00ce906e46494f60dfe7a"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#ab6f4e6d3fde00ce906e46494f60dfe7a">OpenMS::PeakShape::type</a></div><div class="ttdeci">Type type</div><div class="ttdoc">peak shape type </div><div class="ttdef"><b>Definition:</b> PeakShape.h:149</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_ab711e0c5eaae04e02713b6cbd5a6a954"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#ab711e0c5eaae04e02713b6cbd5a6a954">OpenMS::PeakShape::area</a></div><div class="ttdeci">DoubleReal area</div><div class="ttdoc">Area of the peak shape. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:139</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a7b57a1b9b462900850eaaab16539b923"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923">OpenMS::PeakShape::PeakIterator</a></div><div class="ttdeci">MSSpectrum::const_iterator PeakIterator</div><div class="ttdoc">Iterator to the raw data vector. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1PeakShape_1_1PositionLess_html_adf694fe80e838d9e0d7509670bcbb68c"><div class="ttname"><a href="classOpenMS_1_1PeakShape_1_1PositionLess.html#adf694fe80e838d9e0d7509670bcbb68c">OpenMS::PeakShape::PositionLess::operator()</a></div><div class="ttdeci">bool operator()(const PeakShape &a, const PeakShape &b)</div><div class="ttdef"><b>Definition:</b> PeakShape.h:158</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a6bd93679898a199380f450a9351fde28"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a6bd93679898a199380f450a9351fde28">OpenMS::PeakShape::left_width</a></div><div class="ttdeci">DoubleReal left_width</div><div class="ttdoc">Left width parameter. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:135</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a1d1cfd8ffb84e947f82999c682b666a7a13a1459b1209f4aac3d4bf4a6c184f14"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a1d1cfd8ffb84e947f82999c682b666a7a13a1459b1209f4aac3d4bf4a6c184f14">OpenMS::PeakShape::SECH_PEAK</a></div><div class="ttdef"><b>Definition:</b> PeakShape.h:71</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_abcc8b3e1ca93a4a4a5d23aa09f78f8ce"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#abcc8b3e1ca93a4a4a5d23aa09f78f8ce">OpenMS::PeakShape::left_endpoint_</a></div><div class="ttdeci">PeakIterator left_endpoint_</div><div class="ttdoc">Left peak endpoint in the data. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:166</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_acfd893e5679e13dbae94440f76fa3dbd"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#acfd893e5679e13dbae94440f76fa3dbd">OpenMS::PeakShape::signal_to_noise</a></div><div class="ttdeci">DoubleReal signal_to_noise</div><div class="ttdoc">The signal to noise ratio at the mz_position. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:146</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_acec96c76b28be5f89d2966092930e242"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#acec96c76b28be5f89d2966092930e242">OpenMS::PeakShape::r_value</a></div><div class="ttdeci">DoubleReal r_value</div><div class="ttdoc">Correlation coefficient. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:144</div></div>
<div class="ttc" id="structOpenMS_1_1PeakShape_html_a0b633e3762805bc447c451f262a8f405"><div class="ttname"><a href="structOpenMS_1_1PeakShape.html#a0b633e3762805bc447c451f262a8f405">OpenMS::PeakShape::mz_position</a></div><div class="ttdeci">DoubleReal mz_position</div><div class="ttdoc">Centroid position. </div><div class="ttdef"><b>Definition:</b> PeakShape.h:133</div></div>
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