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<a href="ProductModel_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
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<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Clemens Groepl $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;</div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_PRODUCTMODEL_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_PRODUCTMODEL_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="BaseModel_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ModelDescription_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Peak2D_8h.html">OpenMS/KERNEL/Peak2D.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="IsotopeModel_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="EmpiricalFormula_8h.html">OpenMS/CHEMISTRY/EmpiricalFormula.h</a>&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;{</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;  <span class="keyword">template</span> &lt;UInt D&gt;</div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel.html">   61</a></span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a>;</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;  <span class="keyword">template</span> &lt;&gt;</div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html">   65</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a>&lt;2&gt;:</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;2&gt;</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;  {</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#af9bdc3014f3d54c426b6d2df10de4960a77a6b11f9898c052926f1d49765861e8">   71</a></span>&#160;    <span class="keyword">enum</span> {D = 2};</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;</div>
<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#acbd54f28a23dc263a3c81b7c45a3e1e1">   73</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#acbd54f28a23dc263a3c81b7c45a3e1e1">IntensityType</a>;</div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a49ac71825a631fc5537551e33ad4b72c">   74</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1DPosition.html">DPosition&lt;D&gt;</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a49ac71825a631fc5537551e33ad4b72c">PositionType</a>;</div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6138a9f9e2b6d1508d2ac36d9dc219f7">   75</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1BaseModel.html#a8846ea396fc3690dc69387998cf7cb85">BaseModel&lt;D&gt;::SamplesType</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6138a9f9e2b6d1508d2ac36d9dc219f7">SamplesType</a>;</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;</div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6a3f3f9cf3881b00bf58d9c64d74dd2d">   78</a></span>&#160;    <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6a3f3f9cf3881b00bf58d9c64d74dd2d">ProductModel</a>() :</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;D&gt;(),</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;      distributions_(D, 0)</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    {</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;      this-&gt;setName(this-&gt;getProductName());</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;      <span class="comment">//Register model info</span></div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;      {</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        <a class="code" href="classOpenMS_1_1String.html">String</a> name = <a class="code" href="classOpenMS_1_1Peak2D.html#adb828827a83ef9f2b73c77346ca27dba">Peak2D::shortDimensionName</a>(dim);</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        this-&gt;subsections_.push_back(name);</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;        this-&gt;defaults_.setValue(name, <span class="stringliteral">&quot;GaussModel&quot;</span>, <span class="stringliteral">&quot;Name of the model used for this dimension&quot;</span>);</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;      }</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;      <span class="comment">//defaults</span></div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;      this-&gt;defaults_.setValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>, 1.0, <span class="stringliteral">&quot;Scaling factor used to adjust the model distribution to the intensities of the data&quot;</span>);</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;      this-&gt;defaultsToParam_();</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    }</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;</div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaa41960760833fe9b442209fa783b621">   98</a></span>&#160;    <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaa41960760833fe9b442209fa783b621">ProductModel</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a> &amp; source) :</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel</a>&lt;D&gt;(source),</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;      distributions_(D, 0),</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      scale_(source.scale_)</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    {</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;      {</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        <span class="comment">// clone source model</span></div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;        <span class="keywordflow">if</span> (source.distributions_[dim])</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        {</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;          <a class="code" href="classOpenMS_1_1ModelDescription.html">ModelDescription&lt;1&gt;</a> desc(source.distributions_[dim]);</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;          setModel(dim, desc.<a class="code" href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">createModel</a>());</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        }</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;      }</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;      updateMembers_();</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    }</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#abac374a1183452f920027a250681e9c3">  116</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#abac374a1183452f920027a250681e9c3">~ProductModel</a>()</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    {</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      {</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;        <span class="keyword">delete</span> distributions_[dim];</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;      }</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    }</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;</div>
<div class="line"><a name="l00125"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a7d4c7844311fe4df278eae400a598584">  125</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a> &amp; <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a7d4c7844311fe4df278eae400a598584">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a> &amp; source)</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    {</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;      <span class="keywordflow">if</span> (&amp;source == <span class="keyword">this</span>) <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html#aa77887521d929a9565d179067f19b4ef">BaseModel&lt;D&gt;::operator=</a>(source);</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      scale_ = source.scale_;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;      {</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        <span class="keywordflow">if</span> (source.distributions_[dim])</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        {</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;          <span class="comment">// clone source model</span></div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;          <a class="code" href="classOpenMS_1_1ModelDescription.html">ModelDescription&lt;1&gt;</a> desc(source.distributions_[dim]);</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;          setModel(dim, desc.<a class="code" href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">createModel</a>());</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        }</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;        {</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;          distributions_[dim] = 0;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;        }</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;      }</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;      updateMembers_();</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;    }</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;</div>
<div class="line"><a name="l00151"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac4534e8323ba5dc157bc4bba75096d50">  151</a></span>&#160;    <a class="code" href="classdouble.html">IntensityType</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac4534e8323ba5dc157bc4bba75096d50">getIntensity</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1DPosition.html">PositionType</a> &amp; pos)<span class="keyword"> const</span></div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;      <a class="code" href="classdouble.html">IntensityType</a> intens(scale_);</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;      {</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        <span class="keywordflow">if</span> (distributions_[dim] == 0)</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;        {</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;          <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1BaseException.html">Exception::BaseException</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, <a class="code" href="classOpenMS_1_1String.html">String</a>(<span class="stringliteral">&quot;ProductModel: model for dimension &quot;</span>) + dim + <span class="stringliteral">&quot; not set.&quot;</span>, <span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;        }</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        intens *= distributions_[dim]-&gt;getIntensity(pos[dim]);</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;      }</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;      <span class="keywordflow">return</span> intens;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    }</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a756cc3080036d20555e671249572b4ff">  166</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel&lt;D&gt;</a> * <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a756cc3080036d20555e671249572b4ff">create</a>()</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    {</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;      <span class="keywordflow">return</span> <span class="keyword">new</span> <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel&lt;D&gt;</a>();</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    }</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;</div>
<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#af73fd15708e50e77665070023a09cc87">  172</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#af73fd15708e50e77665070023a09cc87">getProductName</a>()</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    {</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;      <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1String.html">String</a>(<span class="stringliteral">&quot;ProductModel&quot;</span>) + D + <span class="stringliteral">&quot;D&quot;</span>;</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    }</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;</div>
<div class="line"><a name="l00184"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">  184</a></span>&#160;    <a class="code" href="classOpenMS_1_1ProductModel.html">ProductModel</a> &amp; <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">setModel</a>(<a class="code" href="classunsigned_01int.html">UInt</a> dim, <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel&lt;1&gt;</a> * dist)</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    {</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;      <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(dim &lt; D, <span class="stringliteral">&quot;ProductModel&lt;D&gt;:getModel(Position): index overflow!&quot;</span>);</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;      <span class="keywordflow">if</span> (dist == 0 || dist == distributions_[dim])</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;      {</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;      }</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;      <span class="keyword">delete</span> distributions_[dim];</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;      distributions_[dim] = dist;</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;      <span class="comment">// Update model info</span></div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;      <a class="code" href="classOpenMS_1_1String.html">String</a> name = <a class="code" href="classOpenMS_1_1Peak2D.html#adb828827a83ef9f2b73c77346ca27dba">Peak2D::shortDimensionName</a>(dim);</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;      this-&gt;param_.removeAll(name + <span class="charliteral">&#39;:&#39;</span>);</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;      this-&gt;param_.insert(name + <span class="charliteral">&#39;:&#39;</span>, distributions_[dim]-&gt;getParameters());</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;      this-&gt;param_.setValue(name, distributions_[dim]-&gt;getName());</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;    }</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;</div>
<div class="line"><a name="l00204"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a5a40666cbd449e6dab1270ef7153f490">  204</a></span>&#160;    <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel&lt;1&gt;</a> * <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a5a40666cbd449e6dab1270ef7153f490">getModel</a>(<a class="code" href="classunsigned_01int.html">UInt</a> dim)<span class="keyword"> const</span></div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;      <a class="code" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>(dim &lt; D, <span class="stringliteral">&quot;ProductModel&lt;D&gt;:getModel(Position): index overflow!&quot;</span>);</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;      <span class="keywordflow">return</span> distributions_[dim];</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;    }</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;</div>
<div class="line"><a name="l00211"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac5f48291648cf72394c6b255f21775e3">  211</a></span>&#160;    <a class="code" href="classdouble.html">IntensityType</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac5f48291648cf72394c6b255f21775e3">getScale</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;      <span class="keywordflow">return</span> scale_;</div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    }</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;</div>
<div class="line"><a name="l00217"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6f73a9c8459a5cc55dada279e525437e">  217</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6f73a9c8459a5cc55dada279e525437e">setScale</a>(<a class="code" href="classdouble.html">IntensityType</a> scale)</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;    {</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;      this-&gt;setCutOff(this-&gt;getCutOff() / scale_);  <span class="comment">// remove scaling from cutoff</span></div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;      scale_ = scale;</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;      this-&gt;param_.setValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>, scale);</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;      this-&gt;setCutOff(this-&gt;getCutOff() * scale_);  <span class="comment">// scale cutoff</span></div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;    }</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;</div>
<div class="line"><a name="l00226"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a9c816e92514bcabd7b6cee5cdddad7c2">  226</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a9c816e92514bcabd7b6cee5cdddad7c2">getSamples</a>(<a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6138a9f9e2b6d1508d2ac36d9dc219f7">SamplesType</a> &amp; cont)<span class="keyword"> const</span></div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;      cont.clear();</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;      <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1BaseModel.html">BaseModel&lt;1&gt;::SamplesType</a> Samples1D;</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;      std::vector&lt;Samples1D&gt; samples(D);</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;      <span class="comment">// get samples for each dimension</span></div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;      {</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;        distributions_[dim]-&gt;getSamples(samples[dim]);</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;      }</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html#a19e7594d894168936a9d0b0a11c4f2c3">BaseModel&lt;D&gt;::PeakType</a> peak;</div>
<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;      std::vector&lt;UInt&gt; i(D, 0);  <span class="comment">// index vector</span></div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;</div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;      <span class="keywordflow">while</span> (i[D - 1] &lt; samples[D - 1].size())</div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;      {</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;        {</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;          peak.getPosition()[dim] = samples[dim][i[dim]].getPosition()[0];</div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;        }</div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;        fillIntensity(peak);</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;        cont.push_back(peak);</div>
<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;        ++i[0];</div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> dim = 0; dim &lt; D - 1; ++dim)</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;        {</div>
<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;          <span class="keywordflow">if</span> (i[dim] &gt;= samples[dim].size())</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;          {</div>
<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;            i[dim] = 0;</div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;            ++i[dim + 1];</div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;          }</div>
<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        }</div>
<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;      }</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    }</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;</div>
<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00263"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaf258e1a9846d9b238ee4b3005ad3ee9">  263</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaf258e1a9846d9b238ee4b3005ad3ee9">updateMembers_</a>()</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;    {</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;      <a class="code" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt;D&gt;::updateMembers_</a>();</div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;      scale_ = (<a class="code" href="classdouble.html">double</a>)(this-&gt;param_.getValue(<span class="stringliteral">&quot;intensity_scaling&quot;</span>));</div>
<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="classunsigned_01int.html">UInt</a> dim = 0; dim &lt; D; ++dim)</div>
<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;      {</div>
<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;        <a class="code" href="classOpenMS_1_1String.html">String</a> name = <a class="code" href="classOpenMS_1_1Peak2D.html#adb828827a83ef9f2b73c77346ca27dba">Peak2D::shortDimensionName</a>(dim);</div>
<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;        <span class="keywordflow">if</span> (this-&gt;param_.exists(name))</div>
<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        {</div>
<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;          <span class="keyword">delete</span> distributions_[dim];</div>
<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;          distributions_[dim] = <a class="code" href="classOpenMS_1_1Factory.html">Factory&lt;BaseModel&lt;1&gt;</a> &gt;::create(this-&gt;param_.getValue(name));</div>
<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;          <a class="code" href="classOpenMS_1_1Param.html">Param</a> copy = this-&gt;param_.<a class="code" href="classOpenMS_1_1Param.html#a25319a96118d2373efc5af9c8679b98b">copy</a>(name + <span class="stringliteral">&quot;:&quot;</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;          distributions_[dim]-&gt;setParameters(copy);</div>
<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;          <span class="keywordflow">if</span> (distributions_[dim]-&gt;getName().hasSubstring(<span class="stringliteral">&quot;IsotopeModel&quot;</span>))</div>
<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;          {</div>
<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;            <span class="keyword">static_cast&lt;</span><a class="code" href="classOpenMS_1_1IsotopeModel.html">IsotopeModel</a> *<span class="keyword">&gt;</span>(distributions_[dim])-&gt;setSamples(static_cast&lt;IsotopeModel *&gt;(distributions_[dim])-&gt;getFormula());</div>
<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;          }</div>
<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;        }</div>
<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;      }</div>
<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;    }</div>
<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;</div>
<div class="line"><a name="l00284"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a103c9301df881bef8b910cc3ae2920d3">  284</a></span>&#160;    std::vector&lt;BaseModel&lt;1&gt; *&gt; <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a103c9301df881bef8b910cc3ae2920d3">distributions_</a>;</div>
<div class="line"><a name="l00285"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a475fb87d5b952386ff650dbb89ef8f21">  285</a></span>&#160;    <a class="code" href="classdouble.html">IntensityType</a> <a class="code" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a475fb87d5b952386ff650dbb89ef8f21">scale_</a>;</div>
<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;  };</div>
<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;}</div>
<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;</div>
<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;<span class="preprocessor">#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_PRODUCTMODEL_H</span></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a8cd14764d47842020930ef7023a2d912"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">OpenMS::ProductModel&lt; 2 &gt;::setModel</a></div><div class="ttdeci">ProductModel &amp; setModel(UInt dim, BaseModel&lt; 1 &gt; *dist)</div><div class="ttdoc">set model dist for dimension dim </div><div class="ttdef"><b>Definition:</b> ProductModel.h:184</div></div>
<div class="ttc" id="EmpiricalFormula_8h_html"><div class="ttname"><a href="EmpiricalFormula_8h.html">EmpiricalFormula.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_aaa41960760833fe9b442209fa783b621"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaa41960760833fe9b442209fa783b621">OpenMS::ProductModel&lt; 2 &gt;::ProductModel</a></div><div class="ttdeci">ProductModel(const ProductModel &amp;source)</div><div class="ttdoc">copy constructor </div><div class="ttdef"><b>Definition:</b> ProductModel.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a7d4c7844311fe4df278eae400a598584"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a7d4c7844311fe4df278eae400a598584">OpenMS::ProductModel&lt; 2 &gt;::operator=</a></div><div class="ttdeci">virtual ProductModel &amp; operator=(const ProductModel &amp;source)</div><div class="ttdoc">assignment operator </div><div class="ttdef"><b>Definition:</b> ProductModel.h:125</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_ac4534e8323ba5dc157bc4bba75096d50"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac4534e8323ba5dc157bc4bba75096d50">OpenMS::ProductModel&lt; 2 &gt;::getIntensity</a></div><div class="ttdeci">IntensityType getIntensity(const PositionType &amp;pos) const </div><div class="ttdoc">intensity equals product of intensities in each dimension </div><div class="ttdef"><b>Definition:</b> ProductModel.h:151</div></div>
<div class="ttc" id="BaseModel_8h_html"><div class="ttname"><a href="BaseModel_8h.html">BaseModel.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1IsotopeModel_html"><div class="ttname"><a href="classOpenMS_1_1IsotopeModel.html">OpenMS::IsotopeModel</a></div><div class="ttdoc">Isotope distribution approximated using linear interpolation. </div><div class="ttdef"><b>Definition:</b> IsotopeModel.h:59</div></div>
<div class="ttc" id="group__Conditions_html_ga45a74ea28109e7e1ed992fbd2ee97778"><div class="ttname"><a href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a></div><div class="ttdeci">#define OPENMS_PRECONDITION(condition, message)</div><div class="ttdoc">Precondition macro. </div><div class="ttdef"><b>Definition:</b> Macros.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1Factory_html"><div class="ttname"><a href="classOpenMS_1_1Factory.html">OpenMS::Factory</a></div><div class="ttdoc">Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...</div><div class="ttdef"><b>Definition:</b> Factory.h:62</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="Peak2D_8h_html"><div class="ttname"><a href="Peak2D_8h.html">Peak2D.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_ac5f48291648cf72394c6b255f21775e3"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac5f48291648cf72394c6b255f21775e3">OpenMS::ProductModel&lt; 2 &gt;::getScale</a></div><div class="ttdeci">IntensityType getScale() const </div><div class="ttdoc">return the intensity scaling factor </div><div class="ttdef"><b>Definition:</b> ProductModel.h:211</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a49ac71825a631fc5537551e33ad4b72c"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a49ac71825a631fc5537551e33ad4b72c">OpenMS::ProductModel&lt; 2 &gt;::PositionType</a></div><div class="ttdeci">DPosition&lt; D &gt; PositionType</div><div class="ttdef"><b>Definition:</b> ProductModel.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html_a25319a96118d2373efc5af9c8679b98b"><div class="ttname"><a href="classOpenMS_1_1Param.html#a25319a96118d2373efc5af9c8679b98b">OpenMS::Param::copy</a></div><div class="ttdeci">Param copy(const String &amp;prefix, bool remove_prefix=false) const </div><div class="ttdoc">Returns a new Param object containing all entries that start with prefix. </div></div>
<div class="ttc" id="ModelDescription_8h_html"><div class="ttname"><a href="ModelDescription_8h.html">ModelDescription.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ModelDescription_html_a3f962855dbc9bbf8074f4306cb9c1a7b"><div class="ttname"><a href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">OpenMS::ModelDescription::createModel</a></div><div class="ttdeci">BaseModel&lt; D &gt; * createModel()</div><div class="ttdef"><b>Definition:</b> ModelDescription.h:97</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_a776f7572fc4f466e9527ca233471920d"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">OpenMS::BaseModel::updateMembers_</a></div><div class="ttdeci">virtual void updateMembers_()</div><div class="ttdoc">This method is used to update extra member variables at the end of the setParameters() method...</div><div class="ttdef"><b>Definition:</b> BaseModel.h:158</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_acbd54f28a23dc263a3c81b7c45a3e1e1"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#acbd54f28a23dc263a3c81b7c45a3e1e1">OpenMS::ProductModel&lt; 2 &gt;::IntensityType</a></div><div class="ttdeci">DoubleReal IntensityType</div><div class="ttdef"><b>Definition:</b> ProductModel.h:73</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a5a40666cbd449e6dab1270ef7153f490"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a5a40666cbd449e6dab1270ef7153f490">OpenMS::ProductModel&lt; 2 &gt;::getModel</a></div><div class="ttdeci">BaseModel&lt; 1 &gt; * getModel(UInt dim) const </div><div class="ttdef"><b>Definition:</b> ProductModel.h:204</div></div>
<div class="ttc" id="classOpenMS_1_1DPosition_html"><div class="ttname"><a href="classOpenMS_1_1DPosition.html">OpenMS::DPosition&lt; D &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_adb828827a83ef9f2b73c77346ca27dba"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#adb828827a83ef9f2b73c77346ca27dba">OpenMS::Peak2D::shortDimensionName</a></div><div class="ttdeci">static char const * shortDimensionName(UInt const dim)</div><div class="ttdoc">Short name of the dimension (abbreviated form) </div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a6a3f3f9cf3881b00bf58d9c64d74dd2d"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6a3f3f9cf3881b00bf58d9c64d74dd2d">OpenMS::ProductModel&lt; 2 &gt;::ProductModel</a></div><div class="ttdeci">ProductModel()</div><div class="ttdoc">Default constructor. </div><div class="ttdef"><b>Definition:</b> ProductModel.h:78</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a6138a9f9e2b6d1508d2ac36d9dc219f7"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6138a9f9e2b6d1508d2ac36d9dc219f7">OpenMS::ProductModel&lt; 2 &gt;::SamplesType</a></div><div class="ttdeci">BaseModel&lt; D &gt;::SamplesType SamplesType</div><div class="ttdef"><b>Definition:</b> ProductModel.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1BaseException_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1BaseException.html">OpenMS::Exception::BaseException</a></div><div class="ttdoc">Exception base class. </div><div class="ttdef"><b>Definition:</b> Exception.h:90</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a6f73a9c8459a5cc55dada279e525437e"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6f73a9c8459a5cc55dada279e525437e">OpenMS::ProductModel&lt; 2 &gt;::setScale</a></div><div class="ttdeci">void setScale(IntensityType scale)</div><div class="ttdoc">set the intensity scaling factor </div><div class="ttdef"><b>Definition:</b> ProductModel.h:217</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a103c9301df881bef8b910cc3ae2920d3"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a103c9301df881bef8b910cc3ae2920d3">OpenMS::ProductModel&lt; 2 &gt;::distributions_</a></div><div class="ttdeci">std::vector&lt; BaseModel&lt; 1 &gt; * &gt; distributions_</div><div class="ttdef"><b>Definition:</b> ProductModel.h:284</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_abac374a1183452f920027a250681e9c3"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#abac374a1183452f920027a250681e9c3">OpenMS::ProductModel&lt; 2 &gt;::~ProductModel</a></div><div class="ttdeci">virtual ~ProductModel()</div><div class="ttdoc">destructor </div><div class="ttdef"><b>Definition:</b> ProductModel.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1ModelDescription_html"><div class="ttname"><a href="classOpenMS_1_1ModelDescription.html">OpenMS::ModelDescription</a></div><div class="ttdoc">Stores the name and parameters of a model. </div><div class="ttdef"><b>Definition:</b> ModelDescription.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a475fb87d5b952386ff650dbb89ef8f21"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a475fb87d5b952386ff650dbb89ef8f21">OpenMS::ProductModel&lt; 2 &gt;::scale_</a></div><div class="ttdeci">IntensityType scale_</div><div class="ttdef"><b>Definition:</b> ProductModel.h:285</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="IsotopeModel_8h_html"><div class="ttname"><a href="IsotopeModel_8h.html">IsotopeModel.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_html"><div class="ttname"><a href="classOpenMS_1_1ProductModel.html">OpenMS::ProductModel</a></div><div class="ttdoc">Class for product models i.e. models with D independent dimensions. </div><div class="ttdef"><b>Definition:</b> ProductModel.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html">OpenMS::BaseModel</a></div><div class="ttdoc">Abstract base class for all D-dimensional models. </div><div class="ttdef"><b>Definition:</b> BaseModel.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_aaf258e1a9846d9b238ee4b3005ad3ee9"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaf258e1a9846d9b238ee4b3005ad3ee9">OpenMS::ProductModel&lt; 2 &gt;::updateMembers_</a></div><div class="ttdeci">void updateMembers_()</div><div class="ttdoc">This method is used to update extra member variables at the end of the setParameters() method...</div><div class="ttdef"><b>Definition:</b> ProductModel.h:263</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_af73fd15708e50e77665070023a09cc87"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#af73fd15708e50e77665070023a09cc87">OpenMS::ProductModel&lt; 2 &gt;::getProductName</a></div><div class="ttdeci">static const String getProductName()</div><div class="ttdoc">Returns the name of the model. </div><div class="ttdef"><b>Definition:</b> ProductModel.h:172</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a9c816e92514bcabd7b6cee5cdddad7c2"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a9c816e92514bcabd7b6cee5cdddad7c2">OpenMS::ProductModel&lt; 2 &gt;::getSamples</a></div><div class="ttdeci">void getSamples(SamplesType &amp;cont) const </div><div class="ttdoc">get reasonable set of samples from the model (i.e. for printing) </div><div class="ttdef"><b>Definition:</b> ProductModel.h:226</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_a8846ea396fc3690dc69387998cf7cb85"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#a8846ea396fc3690dc69387998cf7cb85">OpenMS::BaseModel::SamplesType</a></div><div class="ttdeci">std::vector&lt; PeakType &gt; SamplesType</div><div class="ttdef"><b>Definition:</b> BaseModel.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_aa77887521d929a9565d179067f19b4ef"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#aa77887521d929a9565d179067f19b4ef">OpenMS::BaseModel::operator=</a></div><div class="ttdeci">virtual BaseModel &amp; operator=(const BaseModel &amp;source)</div><div class="ttdoc">assignment operator </div><div class="ttdef"><b>Definition:</b> BaseModel.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1BaseModel_html_a19e7594d894168936a9d0b0a11c4f2c3"><div class="ttname"><a href="classOpenMS_1_1BaseModel.html#a19e7594d894168936a9d0b0a11c4f2c3">OpenMS::BaseModel::PeakType</a></div><div class="ttdeci">DPeak&lt; D &gt;::Type PeakType</div><div class="ttdef"><b>Definition:</b> BaseModel.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1ProductModel_3_012_01_4_html_a756cc3080036d20555e671249572b4ff"><div class="ttname"><a href="classOpenMS_1_1ProductModel_3_012_01_4.html#a756cc3080036d20555e671249572b4ff">OpenMS::ProductModel&lt; 2 &gt;::create</a></div><div class="ttdeci">static BaseModel&lt; D &gt; * create()</div><div class="ttdoc">create new ProductModel object (needed by Factory) </div><div class="ttdef"><b>Definition:</b> ProductModel.h:166</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:19 using doxygen 1.8.5</font></TD>
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