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<a href="QTClusterFinder_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
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<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Hendrik Weisser $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Steffen Sass, Hendrik Weisser $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;</div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor">#ifndef OPENMS_ANALYSIS_MAPMATCHING_QTCLUSTERFINDER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_MAPMATCHING_QTCLUSTERFINDER_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="BaseGroupFinder_8h.html">OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ProgressLogger_8h.html">OpenMS/CONCEPT/ProgressLogger.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="HashGrid_8h.html">OpenMS/COMPARISON/CLUSTERING/HashGrid.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="GridFeature_8h.html">OpenMS/DATASTRUCTURES/GridFeature.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="QTCluster_8h.html">OpenMS/DATASTRUCTURES/QTCluster.h</a>&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="FeatureDistance_8h.html">OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h</a>&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#include &lt;boost/unordered_map.hpp&gt;</span></div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;{</div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;</div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html">   83</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1QTClusterFinder.html">QTClusterFinder</a> :</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1BaseGroupFinder.html">BaseGroupFinder</a></div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;  {</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a2822354fde139807a8cb13ca65f70944">   89</a></span>&#160;    <span class="keyword">typedef</span> OpenMSBoost::unordered_map&lt;std::pair&lt;GridFeature *, GridFeature *&gt;, <a class="code" href="classdouble.html">DoubleReal</a>&gt; <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a2822354fde139807a8cb13ca65f70944">PairDistances</a>;</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;</div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#ac704fff423990c1277f6312ef1dd6c79">   91</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1HashGrid.html">HashGrid&lt;GridFeature *&gt;</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#ac704fff423990c1277f6312ef1dd6c79">Grid</a>;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#ad3fdc277584991e785368634c9d555f5">   94</a></span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#ad3fdc277584991e785368634c9d555f5">num_maps_</a>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;</div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a9df16249c34ac1b3418a7c81fb39a669">   97</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a9df16249c34ac1b3418a7c81fb39a669">use_IDs_</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;</div>
<div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a3aafd37989d40181f127cb99e3411188">  100</a></span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a3aafd37989d40181f127cb99e3411188">max_diff_rt_</a>;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;</div>
<div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a78fb296304815dfb77f2dfbe67352541">  103</a></span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a78fb296304815dfb77f2dfbe67352541">max_diff_mz_</a>;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;</div>
<div class="line"><a name="l00106"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#aa1786f6f880ef1081981859b3760d6c0">  106</a></span>&#160;    <a class="code" href="classOpenMS_1_1FeatureDistance.html">FeatureDistance</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#aa1786f6f880ef1081981859b3760d6c0">feature_distance_</a>;</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a85efe44647c4140c2c973172ac39fe4a">  113</a></span>&#160;    <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a2822354fde139807a8cb13ca65f70944">PairDistances</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#a85efe44647c4140c2c973172ac39fe4a">distances_</a>;</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> getDistance_(<a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * left, <a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * right);</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    <span class="keywordtype">bool</span> compatibleIDs_(<a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a> &amp; cluster, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * neighbor);</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    <span class="keywordtype">void</span> setParameters_(<a class="code" href="classdouble.html">DoubleReal</a> max_intensity, <a class="code" href="classdouble.html">DoubleReal</a> max_mz);</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="keywordtype">void</span> makeConsensusFeature_(std::list&lt;QTCluster&gt; &amp; clustering,</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;           <a class="code" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> &amp; feature, OpenMSBoost::unordered_map&lt;<a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> *,</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;             std::vector&lt; QTCluster * &gt; &gt; &amp; element_mapping);</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    <span class="keywordtype">void</span> computeClustering_(<a class="code" href="classOpenMS_1_1HashGrid.html">Grid</a> &amp; grid, std::list&lt;QTCluster&gt; &amp; clustering);</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">typename</span> MapType&gt;</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;    <span class="keywordtype">void</span> run_(<span class="keyword">const</span> std::vector&lt;MapType&gt; &amp;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;              input_maps, <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; result_map);</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    <span class="keyword">enum</span></div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    {</div>
<div class="line"><a name="l00148"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a06fc87d81c62e9abb8790b6e5713c55baf388fcb6d444ef59841ef549ca6ee0da">  148</a></span>&#160;      RT = <a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>,</div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#a06fc87d81c62e9abb8790b6e5713c55ba35008b046ec2687e53152082281d0867">  149</a></span>&#160;      MZ = <a class="code" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a></div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    };</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    <a class="code" href="classOpenMS_1_1QTClusterFinder.html">QTClusterFinder</a>();</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1QTClusterFinder.html">QTClusterFinder</a>();</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;</div>
<div class="line"><a name="l00160"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#af73fd15708e50e77665070023a09cc87">  160</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1QTClusterFinder.html#af73fd15708e50e77665070023a09cc87">getProductName</a>()</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    {</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;      <span class="keywordflow">return</span> <span class="stringliteral">&quot;qt&quot;</span>;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    }</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;    <span class="keywordtype">void</span> run(<span class="keyword">const</span> std::vector&lt;ConsensusMap&gt; &amp; input_maps,</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;             <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; result_map);</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    <span class="keywordtype">void</span> run(<span class="keyword">const</span> std::vector&lt;<a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap&lt;&gt;</a> &gt; &amp; input_maps,</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;             <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp; result_map);</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;</div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTClusterFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">  182</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classOpenMS_1_1BaseGroupFinder.html">BaseGroupFinder</a> * <a class="code" href="classOpenMS_1_1QTClusterFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">create</a>()</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    {</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;      <span class="keywordflow">return</span> <span class="keyword">new</span> <a class="code" href="classOpenMS_1_1QTClusterFinder.html">QTClusterFinder</a>();</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    }</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;  };</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;}</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/* OPENMS_ANALYSIS_MAPMATCHING_QTCLUSTERFINDER_H */</span><span class="preprocessor"></span></div>
<div class="ttc" id="classOpenMS_1_1HashGrid_html"><div class="ttname"><a href="classOpenMS_1_1HashGrid.html">OpenMS::HashGrid</a></div><div class="ttdoc">Container for (2-dimensional coordinate, value) pairs. </div><div class="ttdef"><b>Definition:</b> HashGrid.h:62</div></div>
<div class="ttc" id="QTCluster_8h_html"><div class="ttname"><a href="QTCluster_8h.html">QTCluster.h</a></div></div>
<div class="ttc" id="FeatureDistance_8h_html"><div class="ttname"><a href="FeatureDistance_8h.html">FeatureDistance.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_aa1786f6f880ef1081981859b3760d6c0"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#aa1786f6f880ef1081981859b3760d6c0">OpenMS::QTClusterFinder::feature_distance_</a></div><div class="ttdeci">FeatureDistance feature_distance_</div><div class="ttdoc">Feature distance functor. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:106</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureDistance_html"><div class="ttname"><a href="classOpenMS_1_1FeatureDistance.html">OpenMS::FeatureDistance</a></div><div class="ttdoc">A functor class for the calculation of distances between features or consensus features. </div><div class="ttdef"><b>Definition:</b> FeatureDistance.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_ac704fff423990c1277f6312ef1dd6c79"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#ac704fff423990c1277f6312ef1dd6c79">OpenMS::QTClusterFinder::Grid</a></div><div class="ttdeci">HashGrid&lt; GridFeature * &gt; Grid</div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_aedd9bc32d9e13af233c2cbc3f06a0b68"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">OpenMS::QTClusterFinder::create</a></div><div class="ttdeci">static BaseGroupFinder * create()</div><div class="ttdoc">Returns an instance of this class. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_a85efe44647c4140c2c973172ac39fe4a"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#a85efe44647c4140c2c973172ac39fe4a">OpenMS::QTClusterFinder::distances_</a></div><div class="ttdeci">PairDistances distances_</div><div class="ttdoc">Distance map. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:113</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_a3aafd37989d40181f127cb99e3411188"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#a3aafd37989d40181f127cb99e3411188">OpenMS::QTClusterFinder::max_diff_rt_</a></div><div class="ttdeci">DoubleReal max_diff_rt_</div><div class="ttdoc">Maximum RT difference. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:100</div></div>
<div class="ttc" id="HashGrid_8h_html"><div class="ttname"><a href="HashGrid_8h.html">HashGrid.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html">OpenMS::QTCluster</a></div><div class="ttdoc">A representation of a QT cluster used for feature grouping. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">OpenMS::Peak2D::RT</a></div><div class="ttdoc">Retention time dimension id (0 if used as a const int) </div><div class="ttdef"><b>Definition:</b> Peak2D.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap&lt;&gt;</a></div></div>
<div class="ttc" id="ProgressLogger_8h_html"><div class="ttname"><a href="ProgressLogger_8h.html">ProgressLogger.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_a9df16249c34ac1b3418a7c81fb39a669"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#a9df16249c34ac1b3418a7c81fb39a669">OpenMS::QTClusterFinder::use_IDs_</a></div><div class="ttdeci">bool use_IDs_</div><div class="ttdoc">Consider peptide identifications for grouping? </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:97</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_af73fd15708e50e77665070023a09cc87"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#af73fd15708e50e77665070023a09cc87">OpenMS::QTClusterFinder::getProductName</a></div><div class="ttdeci">static const String getProductName()</div><div class="ttdoc">Returns the name of the product. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:160</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">OpenMS::Peak2D::MZ</a></div><div class="ttdoc">Mass-to-charge dimension id (1 if used as a const int) </div><div class="ttdef"><b>Definition:</b> Peak2D.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_ad3fdc277584991e785368634c9d555f5"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#ad3fdc277584991e785368634c9d555f5">OpenMS::QTClusterFinder::num_maps_</a></div><div class="ttdeci">Size num_maps_</div><div class="ttdoc">Number of input maps. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1BaseGroupFinder_html"><div class="ttname"><a href="classOpenMS_1_1BaseGroupFinder.html">OpenMS::BaseGroupFinder</a></div><div class="ttdoc">The base class of all element group finding algorithms. </div><div class="ttdef"><b>Definition:</b> BaseGroupFinder.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1GridFeature_html"><div class="ttname"><a href="classOpenMS_1_1GridFeature.html">OpenMS::GridFeature</a></div><div class="ttdoc">Representation of a feature in a hash grid. </div><div class="ttdef"><b>Definition:</b> GridFeature.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_a78fb296304815dfb77f2dfbe67352541"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#a78fb296304815dfb77f2dfbe67352541">OpenMS::QTClusterFinder::max_diff_mz_</a></div><div class="ttdeci">DoubleReal max_diff_mz_</div><div class="ttdoc">Maximum m/z difference. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:103</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html_a2822354fde139807a8cb13ca65f70944"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html#a2822354fde139807a8cb13ca65f70944">OpenMS::QTClusterFinder::PairDistances</a></div><div class="ttdeci">OpenMSBoost::unordered_map&lt; std::pair&lt; GridFeature *, GridFeature * &gt;, DoubleReal &gt; PairDistances</div><div class="ttdoc">Distances between pairs of grid features. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:89</div></div>
<div class="ttc" id="GridFeature_8h_html"><div class="ttname"><a href="GridFeature_8h.html">GridFeature.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTClusterFinder_html"><div class="ttname"><a href="classOpenMS_1_1QTClusterFinder.html">OpenMS::QTClusterFinder</a></div><div class="ttdoc">A variant of QT clustering for the detection of feature groups. </div><div class="ttdef"><b>Definition:</b> QTClusterFinder.h:83</div></div>
<div class="ttc" id="BaseGroupFinder_8h_html"><div class="ttname"><a href="BaseGroupFinder_8h.html">BaseGroupFinder.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusFeature_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusFeature.html">OpenMS::ConsensusFeature</a></div><div class="ttdoc">A 2-dimensional consensus feature. </div><div class="ttdef"><b>Definition:</b> ConsensusFeature.h:59</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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