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<a href="QTCluster_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Hendrik Weisser $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Steffen Sass, Hendrik Weisser $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor">#ifndef OPENMS_DATASTRUCTURES_QTCLUSTER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_DATASTRUCTURES_QTCLUSTER_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="GridFeature_8h.html">OpenMS/DATASTRUCTURES/GridFeature.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="AASequence_8h.html">OpenMS/CHEMISTRY/AASequence.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <boost/unordered_map.hpp></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> {</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">// Boost switch since with 1.47 several classes got moved into a new</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="comment">// boost::unordered namespace (specifically unordered_map).</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"><a class="line" href="namespaceOpenMS_1_1OpenMSBoost.html"> 48</a></span>  <span class="keyword">namespace </span>OpenMSBoost</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  {</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor">#if OPENMS_BOOST_VERSION_MINOR > 47</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor"></span> <span class="keyword">using namespace </span>boost::unordered;</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor">#else</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="preprocessor"></span> <span class="keyword">using namespace </span>boost;</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="preprocessor"></span> }</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html"> 77</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  {</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a4c7691a5ed3861ef6d008a51b869b486"> 85</a></span>  <span class="keyword">typedef</span> OpenMSBoost::unordered_map<Size, std::multimap<DoubleReal, GridFeature *> > <a class="code" href="classOpenMS_1_1QTCluster.html#a4c7691a5ed3861ef6d008a51b869b486">NeighborMap</a>;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a3441b6649006da6b023a014ab057e300"> 88</a></span>  <a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * <a class="code" href="classOpenMS_1_1QTCluster.html#a3441b6649006da6b023a014ab057e300">center_point_</a>;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a61a9d34635d51b74e47d3dccf4da6e3a"> 95</a></span>  <a class="code" href="classOpenMS_1_1QTCluster.html#a4c7691a5ed3861ef6d008a51b869b486">NeighborMap</a> <a class="code" href="classOpenMS_1_1QTCluster.html#a61a9d34635d51b74e47d3dccf4da6e3a">neighbors_</a>;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#ad690323a295c419366d029ffedf969d1"> 98</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1QTCluster.html#ad690323a295c419366d029ffedf969d1">max_distance_</a>;</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#ad3fdc277584991e785368634c9d555f5"> 101</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1QTCluster.html#ad3fdc277584991e785368634c9d555f5">num_maps_</a>;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a290fafab0712cb2178658180a986e4b4"> 104</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1QTCluster.html#a290fafab0712cb2178658180a986e4b4">quality_</a>;</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a8ae5d1a64cdb1fbaa92d334664e1370d"> 107</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1QTCluster.html#a8ae5d1a64cdb1fbaa92d334664e1370d">changed_</a>;</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a9df16249c34ac1b3418a7c81fb39a669"> 110</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1QTCluster.html#a9df16249c34ac1b3418a7c81fb39a669">use_IDs_</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a614d1180d16ecbaa6639aa9462e21b17"> 117</a></span>  std::set<AASequence> <a class="code" href="classOpenMS_1_1QTCluster.html#a614d1180d16ecbaa6639aa9462e21b17">annotations_</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a>();</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="keywordtype">void</span> computeQuality_();</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> </div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <a class="code" href="classdouble.html">DoubleReal</a> optimizeAnnotations_();</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a2dd81c85c0b7f68b59750ae4441f7da4"> 134</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1QTCluster.html#a2dd81c85c0b7f68b59750ae4441f7da4">valid_</a>;</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a>(<a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * center_point, <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> num_maps,</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <a class="code" href="classdouble.html">DoubleReal</a> max_distance, <span class="keywordtype">bool</span> use_IDs);</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a>();</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <a class="code" href="classdouble.html">DoubleReal</a> getCenterRT() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <a class="code" href="classdouble.html">DoubleReal</a> getCenterMZ() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> </div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> size() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <span class="keywordtype">bool</span> operator<(<a class="code" href="classOpenMS_1_1QTCluster.html">QTCluster</a> & cluster);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordtype">void</span> add(<a class="code" href="classOpenMS_1_1GridFeature.html">GridFeature</a> * element, <a class="code" href="classdouble.html">DoubleReal</a> distance);</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> </div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="keywordtype">void</span> getElements(OpenMSBoost::unordered_map<Size, GridFeature *> & elements);</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordtype">bool</span> update(<span class="keyword">const</span> OpenMSBoost::unordered_map<Size, GridFeature *> & removed);</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <a class="code" href="classdouble.html">DoubleReal</a> getQuality();</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keyword">const</span> std::set<AASequence> & getAnnotations();</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> </div>
<div class="line"><a name="l00184"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a051bda95cf60584a1aa7aea3cb2d5215"> 184</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1QTCluster.html#a051bda95cf60584a1aa7aea3cb2d5215">setInvalid</a>() {valid_ = <span class="keyword">false</span>;}</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> </div>
<div class="line"><a name="l00186"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#acbccbde3baec117998ca7aba677494cd"> 186</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1QTCluster.html#acbccbde3baec117998ca7aba677494cd">isInvalid</a>() {<span class="keywordflow">return</span> !valid_;}</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> </div>
<div class="line"><a name="l00188"></a><span class="lineno"><a class="line" href="classOpenMS_1_1QTCluster.html#a90b3a0b45569bd45bc3ac406dc325ecf"> 188</a></span>  <a class="code" href="classOpenMS_1_1QTCluster.html#a4c7691a5ed3861ef6d008a51b869b486">NeighborMap</a> <a class="code" href="classOpenMS_1_1QTCluster.html#a90b3a0b45569bd45bc3ac406dc325ecf">getNeighbors</a>() {<span class="keywordflow">return</span> neighbors_;}</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> </div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  };</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span> }</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> </div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span> <span class="preprocessor">#endif // OPENMS_DATASTRUCTURES_QTCLUSTER_H</span></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a614d1180d16ecbaa6639aa9462e21b17"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a614d1180d16ecbaa6639aa9462e21b17">OpenMS::QTCluster::annotations_</a></div><div class="ttdeci">std::set< AASequence > annotations_</div><div class="ttdoc">Set of annotations of the cluster. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:117</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_ad690323a295c419366d029ffedf969d1"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#ad690323a295c419366d029ffedf969d1">OpenMS::QTCluster::max_distance_</a></div><div class="ttdeci">DoubleReal max_distance_</div><div class="ttdoc">Maximum distance of a point that can still belong to the cluster. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a051bda95cf60584a1aa7aea3cb2d5215"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a051bda95cf60584a1aa7aea3cb2d5215">OpenMS::QTCluster::setInvalid</a></div><div class="ttdeci">void setInvalid()</div><div class="ttdef"><b>Definition:</b> QTCluster.h:184</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html">OpenMS::QTCluster</a></div><div class="ttdoc">A representation of a QT cluster used for feature grouping. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:77</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a61a9d34635d51b74e47d3dccf4da6e3a"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a61a9d34635d51b74e47d3dccf4da6e3a">OpenMS::QTCluster::neighbors_</a></div><div class="ttdeci">NeighborMap neighbors_</div><div class="ttdoc">Neighbors of the cluster center, sorted by distance, for different input maps. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:95</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="AASequence_8h_html"><div class="ttname"><a href="AASequence_8h.html">AASequence.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a290fafab0712cb2178658180a986e4b4"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a290fafab0712cb2178658180a986e4b4">OpenMS::QTCluster::quality_</a></div><div class="ttdeci">DoubleReal quality_</div><div class="ttdoc">Quality of the cluster. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a90b3a0b45569bd45bc3ac406dc325ecf"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a90b3a0b45569bd45bc3ac406dc325ecf">OpenMS::QTCluster::getNeighbors</a></div><div class="ttdeci">NeighborMap getNeighbors()</div><div class="ttdef"><b>Definition:</b> QTCluster.h:188</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a4c7691a5ed3861ef6d008a51b869b486"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a4c7691a5ed3861ef6d008a51b869b486">OpenMS::QTCluster::NeighborMap</a></div><div class="ttdeci">OpenMSBoost::unordered_map< Size, std::multimap< DoubleReal, GridFeature * > > NeighborMap</div><div class="ttdoc">Mapping: input map -&gt; distance to center (ordered!) -&gt; neighboring point. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:85</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a3441b6649006da6b023a014ab057e300"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a3441b6649006da6b023a014ab057e300">OpenMS::QTCluster::center_point_</a></div><div class="ttdeci">GridFeature * center_point_</div><div class="ttdoc">Pointer to the cluster center. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1GridFeature_html"><div class="ttname"><a href="classOpenMS_1_1GridFeature.html">OpenMS::GridFeature</a></div><div class="ttdoc">Representation of a feature in a hash grid. </div><div class="ttdef"><b>Definition:</b> GridFeature.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a9df16249c34ac1b3418a7c81fb39a669"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a9df16249c34ac1b3418a7c81fb39a669">OpenMS::QTCluster::use_IDs_</a></div><div class="ttdeci">bool use_IDs_</div><div class="ttdoc">Keep track of peptide IDs and use them for matching? </div><div class="ttdef"><b>Definition:</b> QTCluster.h:110</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a8ae5d1a64cdb1fbaa92d334664e1370d"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a8ae5d1a64cdb1fbaa92d334664e1370d">OpenMS::QTCluster::changed_</a></div><div class="ttdeci">bool changed_</div><div class="ttdoc">Has the cluster changed (if yes, quality needs to be recomputed)? </div><div class="ttdef"><b>Definition:</b> QTCluster.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_ad3fdc277584991e785368634c9d555f5"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#ad3fdc277584991e785368634c9d555f5">OpenMS::QTCluster::num_maps_</a></div><div class="ttdeci">Size num_maps_</div><div class="ttdoc">Number of input maps. </div><div class="ttdef"><b>Definition:</b> QTCluster.h:101</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_acbccbde3baec117998ca7aba677494cd"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#acbccbde3baec117998ca7aba677494cd">OpenMS::QTCluster::isInvalid</a></div><div class="ttdeci">bool isInvalid()</div><div class="ttdef"><b>Definition:</b> QTCluster.h:186</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1QTCluster_html_a2dd81c85c0b7f68b59750ae4441f7da4"><div class="ttname"><a href="classOpenMS_1_1QTCluster.html#a2dd81c85c0b7f68b59750ae4441f7da4">OpenMS::QTCluster::valid_</a></div><div class="ttdeci">bool valid_</div><div class="ttdef"><b>Definition:</b> QTCluster.h:134</div></div>
<div class="ttc" id="GridFeature_8h_html"><div class="ttname"><a href="GridFeature_8h.html">GridFeature.h</a></div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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