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<a href="SILACFiltering_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Lars Nilse $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Steffen Sass, Holger Plattfaut, Bastian Blank $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_FILTERING_DATAREDUCTION_SILACFILTERING_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_FILTERING_DATAREDUCTION_SILACFILTERING_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="StandardTypes_8h.html">OpenMS/KERNEL/StandardTypes.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ProgressLogger_8h.html">OpenMS/CONCEPT/ProgressLogger.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="DRange_8h.html">OpenMS/DATASTRUCTURES/DRange.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="PeakWidthEstimator_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <gsl/gsl_interp.h></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <gsl/gsl_spline.h></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <list></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <map></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">class </span>SILACFilter;</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html"> 62</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1SILACFiltering.html">SILACFiltering</a> :</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  {</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#aec85b66fe6c7da923bdcb9bf2d202f09"> 66</a></span>  <span class="keyword">typedef</span> std::vector<SILACFilter> <a class="code" href="classOpenMS_1_1SILACFiltering.html#aec85b66fe6c7da923bdcb9bf2d202f09">Filters</a>;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a82c290e677d8fd7e399df0502ef455ed"> 71</a></span>  <a class="code" href="classOpenMS_1_1SILACFiltering.html#aec85b66fe6c7da923bdcb9bf2d202f09">Filters</a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a82c290e677d8fd7e399df0502ef455ed">filters_</a>;</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html"> 76</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html">SpectrumInterpolation</a></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  {</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a227bf427a009baf9d6841902fadefda5"> 79</a></span>  gsl_interp_accel * <a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a227bf427a009baf9d6841902fadefda5">current_</a>;</div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a4af659fc7efa824d986d9d275b1e19e6"> 80</a></span>  gsl_spline * <a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a4af659fc7efa824d986d9d275b1e19e6">spline_</a>;</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html">SpectrumInterpolation</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<></a> &, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SILACFiltering.html">SILACFiltering</a> &);</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  ~<a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html">SpectrumInterpolation</a>();</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a57f9965611789b6fd776ceee948a406d"> 86</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a57f9965611789b6fd776ceee948a406d">operator()</a>(<a class="code" href="classdouble.html">DoubleReal</a> mz)<span class="keyword"> const</span></div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="keywordflow">return</span> gsl_spline_eval(spline_, mz, current_);</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  }</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  };</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a130cafea98e2066ba4cc66a7b6812485"> 97</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a130cafea98e2066ba4cc66a7b6812485">intensity_cutoff_</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#ad64df636f01f5c9ce6d6c98f512fa235"> 102</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<Peak1D></a> & <a class="code" href="classOpenMS_1_1SILACFiltering.html#ad64df636f01f5c9ce6d6c98f512fa235">exp_</a>;</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a445b1d6dd657b76575389dc5b0e42113"> 107</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<Peak1D></a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a445b1d6dd657b76575389dc5b0e42113">picked_exp_</a>;</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a11fead9b0087b53d3aafa414b3753818"> 112</a></span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<Peak1D></a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a11fead9b0087b53d3aafa414b3753818">picked_exp_seeds_</a>;</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a298fda9d4369c9495174239d4dfd13dc"> 117</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a298fda9d4369c9495174239d4dfd13dc">debug_filebase_</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keywordtype">void</span> pickSeeds_();</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="keywordtype">void</span> filterSeeds_();</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span> </div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#ab63fc6fa4e30325a870a716d13512a06"> 132</a></span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PeakWidthEstimator_1_1Result.html">PeakWidthEstimator::Result</a> <a class="code" href="classOpenMS_1_1SILACFiltering.html#ab63fc6fa4e30325a870a716d13512a06">peak_width</a>;</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="classOpenMS_1_1SILACFiltering.html">SILACFiltering</a>(<a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<Peak1D></a> & exp, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PeakWidthEstimator_1_1Result.html">PeakWidthEstimator::Result</a> &, <span class="keyword">const</span> <a class="code" href="classdouble.html">DoubleReal</a> intensity_cutoff, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> debug_filebase_ = <span class="stringliteral">""</span>);</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> </div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <span class="keywordtype">void</span> addFilter(<a class="code" href="classOpenMS_1_1SILACFilter.html">SILACFilter</a> & filter);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordtype">void</span> filterDataPoints();</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html"> 159</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html">BlacklistEntry</a></div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  {</div>
<div class="line"><a name="l00161"></a><span class="lineno"><a class="line" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a572b06b0b5a1a7ab7757e42b0d4f5691"> 161</a></span>  <a class="code" href="classOpenMS_1_1DRange.html">DRange<2></a> <a class="code" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a572b06b0b5a1a7ab7757e42b0d4f5691">range</a>;</div>
<div class="line"><a name="l00162"></a><span class="lineno"><a class="line" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a8253a7962ca1c79b71e6af96589b7720"> 162</a></span>  <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a8253a7962ca1c79b71e6af96589b7720">charge</a>;</div>
<div class="line"><a name="l00163"></a><span class="lineno"><a class="line" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a444153647aa3a3869dbaad9fd46486f6"> 163</a></span>  std::vector<DoubleReal> <a class="code" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a444153647aa3a3869dbaad9fd46486f6">mass_separations</a>;</div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a677d19787b3d1713412a9da73f159c1a"> 164</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a677d19787b3d1713412a9da73f159c1a">relative_peak_position</a>;</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  };</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SILACFiltering.html#a77f7e49ac1d93553e32542f5a7e34587"> 170</a></span>  std::multimap<DoubleReal, BlacklistEntry> <a class="code" href="classOpenMS_1_1SILACFiltering.html#a77f7e49ac1d93553e32542f5a7e34587">blacklist</a>;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  };</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> }</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> </div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span> <span class="preprocessor">#endif </span><span class="comment">/* SILACFILTERING_H_ */</span><span class="preprocessor"></span></div>
<div class="ttc" id="StandardTypes_8h_html"><div class="ttname"><a href="StandardTypes_8h.html">StandardTypes.h</a></div></div>
<div class="ttc" id="PeakWidthEstimator_8h_html"><div class="ttname"><a href="PeakWidthEstimator_8h.html">PeakWidthEstimator.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry_html_a444153647aa3a3869dbaad9fd46486f6"><div class="ttname"><a href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a444153647aa3a3869dbaad9fd46486f6">OpenMS::SILACFiltering::BlacklistEntry::mass_separations</a></div><div class="ttdeci">std::vector< DoubleReal > mass_separations</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:163</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation_html_a57f9965611789b6fd776ceee948a406d"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a57f9965611789b6fd776ceee948a406d">OpenMS::SILACFiltering::SpectrumInterpolation::operator()</a></div><div class="ttdeci">DoubleReal operator()(DoubleReal mz) const </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:86</div></div>
<div class="ttc" id="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry_html_a572b06b0b5a1a7ab7757e42b0d4f5691"><div class="ttname"><a href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a572b06b0b5a1a7ab7757e42b0d4f5691">OpenMS::SILACFiltering::BlacklistEntry::range</a></div><div class="ttdeci">DRange< 2 > range</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:161</div></div>
<div class="ttc" id="ProgressLogger_8h_html"><div class="ttname"><a href="ProgressLogger_8h.html">ProgressLogger.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SILACFilter_html"><div class="ttname"><a href="classOpenMS_1_1SILACFilter.html">OpenMS::SILACFilter</a></div><div class="ttdoc">Filter to use for SILACFiltering. </div><div class="ttdef"><b>Definition:</b> SILACFilter.h:58</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry_html_a8253a7962ca1c79b71e6af96589b7720"><div class="ttname"><a href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a8253a7962ca1c79b71e6af96589b7720">OpenMS::SILACFiltering::BlacklistEntry::charge</a></div><div class="ttdeci">Int charge</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:162</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_aec85b66fe6c7da923bdcb9bf2d202f09"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#aec85b66fe6c7da923bdcb9bf2d202f09">OpenMS::SILACFiltering::Filters</a></div><div class="ttdeci">std::vector< SILACFilter > Filters</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_ab63fc6fa4e30325a870a716d13512a06"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#ab63fc6fa4e30325a870a716d13512a06">OpenMS::SILACFiltering::peak_width</a></div><div class="ttdeci">const PeakWidthEstimator::Result peak_width</div><div class="ttdoc">peak-width equation </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:132</div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum<></a></div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation_html_a4af659fc7efa824d986d9d275b1e19e6"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a4af659fc7efa824d986d9d275b1e19e6">OpenMS::SILACFiltering::SpectrumInterpolation::spline_</a></div><div class="ttdeci">gsl_spline * spline_</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:80</div></div>
<div class="ttc" id="DRange_8h_html"><div class="ttname"><a href="DRange_8h.html">DRange.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a82c290e677d8fd7e399df0502ef455ed"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a82c290e677d8fd7e399df0502ef455ed">OpenMS::SILACFiltering::filters_</a></div><div class="ttdeci">Filters filters_</div><div class="ttdoc">holds all filters used in the filtering </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a130cafea98e2066ba4cc66a7b6812485"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a130cafea98e2066ba4cc66a7b6812485">OpenMS::SILACFiltering::intensity_cutoff_</a></div><div class="ttdeci">DoubleReal intensity_cutoff_</div><div class="ttdoc">minimal intensity of SILAC features </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:97</div></div>
<div class="ttc" id="classOpenMS_1_1PeakWidthEstimator_1_1Result_html"><div class="ttname"><a href="classOpenMS_1_1PeakWidthEstimator_1_1Result.html">OpenMS::PeakWidthEstimator::Result</a></div><div class="ttdef"><b>Definition:</b> PeakWidthEstimator.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a77f7e49ac1d93553e32542f5a7e34587"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a77f7e49ac1d93553e32542f5a7e34587">OpenMS::SILACFiltering::blacklist</a></div><div class="ttdeci">std::multimap< DoubleReal, BlacklistEntry > blacklist</div><div class="ttdoc">holds the range that is blacklisted for other filters and the filter that generated the blacklist ent...</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:170</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation_html"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html">OpenMS::SILACFiltering::SpectrumInterpolation</a></div><div class="ttdoc">Wrapper class for spectrum interpolation. </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:76</div></div>
<div class="ttc" id="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry_html"><div class="ttname"><a href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html">OpenMS::SILACFiltering::BlacklistEntry</a></div><div class="ttdoc">structure for blacklist </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:159</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_ad64df636f01f5c9ce6d6c98f512fa235"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#ad64df636f01f5c9ce6d6c98f512fa235">OpenMS::SILACFiltering::exp_</a></div><div class="ttdeci">MSExperiment< Peak1D > & exp_</div><div class="ttdoc">raw data </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:102</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a445b1d6dd657b76575389dc5b0e42113"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a445b1d6dd657b76575389dc5b0e42113">OpenMS::SILACFiltering::picked_exp_</a></div><div class="ttdeci">MSExperiment< Peak1D > picked_exp_</div><div class="ttdoc">picked data </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1DRange_html"><div class="ttname"><a href="classOpenMS_1_1DRange.html">OpenMS::DRange< 2 ></a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment< Peak1D ></a></div></div>
<div class="ttc" id="classOpenMS_1_1ProgressLogger_html"><div class="ttname"><a href="classOpenMS_1_1ProgressLogger.html">OpenMS::ProgressLogger</a></div><div class="ttdoc">Base class for all classes that want to report their progess. </div><div class="ttdef"><b>Definition:</b> ProgressLogger.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry_html_a677d19787b3d1713412a9da73f159c1a"><div class="ttname"><a href="structOpenMS_1_1SILACFiltering_1_1BlacklistEntry.html#a677d19787b3d1713412a9da73f159c1a">OpenMS::SILACFiltering::BlacklistEntry::relative_peak_position</a></div><div class="ttdeci">DoubleReal relative_peak_position</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a298fda9d4369c9495174239d4dfd13dc"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a298fda9d4369c9495174239d4dfd13dc">OpenMS::SILACFiltering::debug_filebase_</a></div><div class="ttdeci">const String debug_filebase_</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:117</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html_a11fead9b0087b53d3aafa414b3753818"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html#a11fead9b0087b53d3aafa414b3753818">OpenMS::SILACFiltering::picked_exp_seeds_</a></div><div class="ttdeci">MSExperiment< Peak1D > picked_exp_seeds_</div><div class="ttdoc">picked data seeds </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:112</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_html"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering.html">OpenMS::SILACFiltering</a></div><div class="ttdoc">Filtering for SILAC data. </div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation_html_a227bf427a009baf9d6841902fadefda5"><div class="ttname"><a href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#a227bf427a009baf9d6841902fadefda5">OpenMS::SILACFiltering::SpectrumInterpolation::current_</a></div><div class="ttdeci">gsl_interp_accel * current_</div><div class="ttdef"><b>Definition:</b> SILACFiltering.h:79</div></div>
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