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<a href="SpectrumSettings_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Marc Sturm $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_METADATA_SPECTRUMSETTINGS_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_METADATA_SPECTRUMSETTINGS_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="InstrumentSettings_8h.html">OpenMS/METADATA/InstrumentSettings.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="AcquisitionInfo_8h.html">OpenMS/METADATA/AcquisitionInfo.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="SourceFile_8h.html">OpenMS/METADATA/SourceFile.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Precursor_8h.html">OpenMS/METADATA/Precursor.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Product_8h.html">OpenMS/METADATA/Product.h</a>&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="PeptideIdentification_8h.html">OpenMS/METADATA/PeptideIdentification.h</a>&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="DataProcessing_8h.html">OpenMS/METADATA/DataProcessing.h</a>&gt;</span></div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;</div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;{</div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html">   64</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> :</div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;  {</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">   71</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">SpectrumType</a></div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    {</div>
<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a6ce26a62afab55d7606ad4e92428b30c">   73</a></span>&#160;      <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a6ce26a62afab55d7606ad4e92428b30c">UNKNOWN</a>,          </div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a07c53159ed2cb4665a4f16711140f4b5">   74</a></span>&#160;      <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a07c53159ed2cb4665a4f16711140f4b5">PEAKS</a>,            </div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">   75</a></span>&#160;      <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">RAWDATA</a>,          </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a6a9209d4df9dc483d23f8415f57ac6bf">   76</a></span>&#160;      SIZE_OF_SPECTRUMTYPE</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    };</div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a190d47d7104f587725f1d59b97e5cea4">   79</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> std::string NamesOfSpectrumType[SIZE_OF_SPECTRUMTYPE];</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a>();</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; source);</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    ~<a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a>();</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    <span class="comment">// Assignment operator</span></div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;    <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; source);</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    <span class="keywordtype">bool</span> operator!=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;    <span class="keywordtype">void</span> unify(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; rhs);</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;    <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">SpectrumType</a> getType() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    <span class="keywordtype">void</span> setType(<a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">SpectrumType</a> type);</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; getNativeID() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    <span class="keywordtype">void</span> setNativeID(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; native_id);</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; getComment() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;    <span class="keywordtype">void</span> setComment(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; comment);</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> &amp; getInstrumentSettings() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> &amp; getInstrumentSettings();</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;    <span class="keywordtype">void</span> setInstrumentSettings(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> &amp; instrument_settings);</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> &amp; getAcquisitionInfo() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> &amp; getAcquisitionInfo();</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    <span class="keywordtype">void</span> setAcquisitionInfo(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> &amp; acquisition_info);</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &amp; getSourceFile() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &amp; getSourceFile();</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="keywordtype">void</span> setSourceFile(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &amp; source_file);</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;    <span class="keyword">const</span> std::vector&lt;Precursor&gt; &amp; getPrecursors() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    std::vector&lt;Precursor&gt; &amp; getPrecursors();</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;    <span class="keywordtype">void</span> setPrecursors(<span class="keyword">const</span> std::vector&lt;Precursor&gt; &amp; precursors);</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;    <span class="keyword">const</span> std::vector&lt;Product&gt; &amp; getProducts() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;    std::vector&lt;Product&gt; &amp; getProducts();</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    <span class="keywordtype">void</span> setProducts(<span class="keyword">const</span> std::vector&lt;Product&gt; &amp; products);</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    <span class="keyword">const</span> std::vector&lt;PeptideIdentification&gt; &amp; getPeptideIdentifications() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    std::vector&lt;PeptideIdentification&gt; &amp; getPeptideIdentifications();</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    <span class="keywordtype">void</span> setPeptideIdentifications(<span class="keyword">const</span> std::vector&lt;PeptideIdentification&gt; &amp; identifications);</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    <span class="keyword">const</span> std::vector&lt;DataProcessing&gt; &amp; getDataProcessing() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    std::vector&lt;DataProcessing&gt; &amp; getDataProcessing();</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    <span class="keywordtype">void</span> setDataProcessing(<span class="keyword">const</span> std::vector&lt;DataProcessing&gt; &amp; data_processing);</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;</div>
<div class="line"><a name="l00165"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#aafc1de6211f4b369604089d436045632">  165</a></span>&#160;    <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">SpectrumType</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#aafc1de6211f4b369604089d436045632">type_</a>;</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a73b5c7a1b7a1690f078dcd40c1f2dfa8">  166</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a73b5c7a1b7a1690f078dcd40c1f2dfa8">native_id_</a>;</div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a0476ea2b66eba99318ede9591a223f64">  167</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a0476ea2b66eba99318ede9591a223f64">comment_</a>;</div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a346ca9b9608f0f953f03844b3583704c">  168</a></span>&#160;    <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a346ca9b9608f0f953f03844b3583704c">instrument_settings_</a>;</div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a19e10bb883161f929b342e53fd527d3e">  169</a></span>&#160;    <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a19e10bb883161f929b342e53fd527d3e">source_file_</a>;</div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a15f7ad037730eef379e7e6327f35b7c6">  170</a></span>&#160;    <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a15f7ad037730eef379e7e6327f35b7c6">acquisition_info_</a>;</div>
<div class="line"><a name="l00171"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ad42442a0cfa9eb4f410488dce0f352b5">  171</a></span>&#160;    std::vector&lt;Precursor&gt; <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ad42442a0cfa9eb4f410488dce0f352b5">precursors_</a>;</div>
<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#aef6df6cd8243daa6d2d9474aa876c36c">  172</a></span>&#160;    std::vector&lt;Product&gt; <a class="code" href="classOpenMS_1_1SpectrumSettings.html#aef6df6cd8243daa6d2d9474aa876c36c">products_</a>;</div>
<div class="line"><a name="l00173"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#ab23c755ffc947f199c13835fd3719a2f">  173</a></span>&#160;    std::vector&lt;PeptideIdentification&gt; <a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab23c755ffc947f199c13835fd3719a2f">identification_</a>;</div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SpectrumSettings.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">  174</a></span>&#160;    std::vector&lt;DataProcessing&gt; <a class="code" href="classOpenMS_1_1SpectrumSettings.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;  };</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;  OPENMS_DLLAPI std::ostream &amp; <a class="code" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator&lt;&lt;</a>(std::ostream &amp; os, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &amp; spec);</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;</div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;<span class="preprocessor">#endif // OPENMS_METADATA_SPECTRUMSETTINGS_H</span></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html">OpenMS::InstrumentSettings</a></div><div class="ttdoc">Description of the settings a MS Instrument was run with. </div><div class="ttdef"><b>Definition:</b> InstrumentSettings.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9a07c53159ed2cb4665a4f16711140f4b5"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a07c53159ed2cb4665a4f16711140f4b5">OpenMS::SpectrumSettings::PEAKS</a></div><div class="ttdoc">Peak data (also called centroided data or stick data) </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ad42442a0cfa9eb4f410488dce0f352b5"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ad42442a0cfa9eb4f410488dce0f352b5">OpenMS::SpectrumSettings::precursors_</a></div><div class="ttdeci">std::vector&lt; Precursor &gt; precursors_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:171</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">OpenMS::SpectrumSettings::SpectrumType</a></div><div class="ttdeci">SpectrumType</div><div class="ttdoc">Spectrum peak type. </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1AcquisitionInfo_html"><div class="ttname"><a href="classOpenMS_1_1AcquisitionInfo.html">OpenMS::AcquisitionInfo</a></div><div class="ttdoc">Description of the combination of raw data to a single spectrum. </div><div class="ttdef"><b>Definition:</b> AcquisitionInfo.h:54</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74df8b74439d1f76961c8d987fb074fd"><div class="ttname"><a href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">OpenMS::operator&lt;&lt;</a></div><div class="ttdeci">std::ostream &amp; operator&lt;&lt;(std::ostream &amp;os, const ItraqQuantifier::ItraqQuantifierStats &amp;stats)</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html">OpenMS::SpectrumSettings</a></div><div class="ttdoc">Representation of 1D spectrum settings. </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html">OpenMS::SourceFile</a></div><div class="ttdoc">Description of a file location, used to store the origin of (meta) data. </div><div class="ttdef"><b>Definition:</b> SourceFile.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">OpenMS::SpectrumSettings::RAWDATA</a></div><div class="ttdoc">Raw data (also called profile data) </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:75</div></div>
<div class="ttc" id="DataProcessing_8h_html"><div class="ttname"><a href="DataProcessing_8h.html">DataProcessing.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9a6ce26a62afab55d7606ad4e92428b30c"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a6ce26a62afab55d7606ad4e92428b30c">OpenMS::SpectrumSettings::UNKNOWN</a></div><div class="ttdoc">Unknown spectrum type. </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:73</div></div>
<div class="ttc" id="Product_8h_html"><div class="ttname"><a href="Product_8h.html">Product.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a346ca9b9608f0f953f03844b3583704c"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a346ca9b9608f0f953f03844b3583704c">OpenMS::SpectrumSettings::instrument_settings_</a></div><div class="ttdeci">InstrumentSettings instrument_settings_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:168</div></div>
<div class="ttc" id="SourceFile_8h_html"><div class="ttname"><a href="SourceFile_8h.html">SourceFile.h</a></div></div>
<div class="ttc" id="AcquisitionInfo_8h_html"><div class="ttname"><a href="AcquisitionInfo_8h.html">AcquisitionInfo.h</a></div></div>
<div class="ttc" id="InstrumentSettings_8h_html"><div class="ttname"><a href="InstrumentSettings_8h.html">InstrumentSettings.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoInterface_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfoInterface.html">OpenMS::MetaInfoInterface</a></div><div class="ttdoc">Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). </div><div class="ttdef"><b>Definition:</b> MetaInfoInterface.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_aafc1de6211f4b369604089d436045632"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#aafc1de6211f4b369604089d436045632">OpenMS::SpectrumSettings::type_</a></div><div class="ttdeci">SpectrumType type_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:165</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a19e10bb883161f929b342e53fd527d3e"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a19e10bb883161f929b342e53fd527d3e">OpenMS::SpectrumSettings::source_file_</a></div><div class="ttdeci">SourceFile source_file_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:169</div></div>
<div class="ttc" id="PeptideIdentification_8h_html"><div class="ttname"><a href="PeptideIdentification_8h.html">PeptideIdentification.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a15f7ad037730eef379e7e6327f35b7c6"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a15f7ad037730eef379e7e6327f35b7c6">OpenMS::SpectrumSettings::acquisition_info_</a></div><div class="ttdeci">AcquisitionInfo acquisition_info_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:170</div></div>
<div class="ttc" id="Precursor_8h_html"><div class="ttname"><a href="Precursor_8h.html">Precursor.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a73b5c7a1b7a1690f078dcd40c1f2dfa8"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a73b5c7a1b7a1690f078dcd40c1f2dfa8">OpenMS::SpectrumSettings::native_id_</a></div><div class="ttdeci">String native_id_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:166</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_aef6df6cd8243daa6d2d9474aa876c36c"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#aef6df6cd8243daa6d2d9474aa876c36c">OpenMS::SpectrumSettings::products_</a></div><div class="ttdeci">std::vector&lt; Product &gt; products_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:172</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a0476ea2b66eba99318ede9591a223f64"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a0476ea2b66eba99318ede9591a223f64">OpenMS::SpectrumSettings::comment_</a></div><div class="ttdeci">String comment_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a50a6b2cdb2828e1f3e29c0096fd4ef63"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">OpenMS::SpectrumSettings::data_processing_</a></div><div class="ttdeci">std::vector&lt; DataProcessing &gt; data_processing_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:174</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab23c755ffc947f199c13835fd3719a2f"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab23c755ffc947f199c13835fd3719a2f">OpenMS::SpectrumSettings::identification_</a></div><div class="ttdeci">std::vector&lt; PeptideIdentification &gt; identification_</div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:173</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:21 using doxygen 1.8.5</font></TD>
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