File: TOPPASScene_8h_source.html

package info (click to toggle)
openms 1.11.1-5
links: PTS, VCS
area: main
in suites: jessie, jessie-kfreebsd
size: 436,688 kB
ctags: 150,907
sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (328 lines) | stat: -rw-r--r-- 66,389 bytes
<HTML>
<HEAD>
<TITLE>TOPPASScene.h Source File</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> &nbsp;&middot;
<A href="classes.html">Classes</A> &nbsp;&middot;
<A href="annotated.html">Annotated Classes</A> &nbsp;&middot;
<A href="modules.html">Modules</A> &nbsp;&middot;
<A href="functions_func.html">Members</A> &nbsp;&middot;
<A href="namespaces.html">Namespaces</A> &nbsp;&middot;
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_2997ac12008a18000666f01ba7d0ffaa.html">VISUAL</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="headertitle">
<div class="title">TOPPASScene.h</div>  </div>
</div><!--header-->
<div class="contents">
<a href="TOPPASScene_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Johannes Junker $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Johannes Junker, Chris Bielow $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_VISUAL_TOPPASSCENE_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_TOPPASSCENE_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;OpenMS/config.h&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="TOPPASEdge_8h.html">OpenMS/VISUAL/TOPPASEdge.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="TOPPASToolVertex_8h.html">OpenMS/VISUAL/TOPPASToolVertex.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#include &lt;QtGui/QGraphicsScene&gt;</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;QtCore/QProcess&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;{</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  <span class="keyword">class </span>TOPPASVertex;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;  <span class="keyword">class </span>TOPPASToolVertex;</div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;  <span class="keyword">class </span>TOPPASMergerVertex;</div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;  <span class="keyword">class </span>TOPPASOutputFileListVertex;</div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;  <span class="keyword">class </span>TOPPASEdge;</div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;  <span class="keyword">class </span>TOPPASResources;</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1FakeProcess.html">   58</a></span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1FakeProcess.html">FakeProcess</a> :</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    <span class="keyword">public</span> <a class="code" href="classQProcess.html">QProcess</a></div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;  {</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;    Q_OBJECT</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1FakeProcess.html#ab1206bc7c74fd1ac80f182de405f7b3d">start</a>(<span class="keyword">const</span> QString &amp; program, <span class="keyword">const</span> QStringList &amp; arguments, OpenMode mode = ReadWrite);</div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;  };</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html">   84</a></span>&#160;  <span class="keyword">class </span>OPENMS_GUI_DLLAPI <a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> :</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <span class="keyword">public</span> <a class="code" href="classQGraphicsScene.html">QGraphicsScene</a></div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;  {</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;    Q_OBJECT</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html">   92</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html">TOPPProcess</a></div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    {</div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#af181393a96252f2adba728112374972b">   95</a></span>&#160;      <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#af181393a96252f2adba728112374972b">TOPPProcess</a>(<a class="code" href="classQProcess.html">QProcess</a> * p, <span class="keyword">const</span> QString &amp; cmd, <span class="keyword">const</span> QStringList &amp; arg, <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> * <span class="keyword">const</span> tool) :</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        proc(p),</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        command(cmd),</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        args(arg),</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        tv(tool)</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;      {</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      }</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ae1967dafb032752ce64bea2b04a8aaca">  104</a></span>&#160;      <a class="code" href="classQProcess.html">QProcess</a> * <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ae1967dafb032752ce64bea2b04a8aaca">proc</a>;</div>
<div class="line"><a name="l00106"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a1db826cabd271c1931e78ebc1560604c">  106</a></span>&#160;      QString <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a1db826cabd271c1931e78ebc1560604c">command</a>;</div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ab8db4e98185d649f82f10967744b52fd">  108</a></span>&#160;      QStringList <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ab8db4e98185d649f82f10967744b52fd">args</a>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a0ce5c91df58ba9df87bae973065b89bd">  110</a></span>&#160;      <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> * <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a0ce5c91df58ba9df87bae973065b89bd">tv</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    };</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">  114</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a></div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    {</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a5ba5558f7aa32a11abc3c49c1180c1ae">  116</a></span>&#160;      <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a5ba5558f7aa32a11abc3c49c1180c1ae">AM_NEW_EDGE</a>,</div>
<div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a483a72c360c2c5ecc14067035f6b0502">  117</a></span>&#160;      AM_MOVE</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    };</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cd">  122</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cd">RefreshStatus</a></div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;    {</div>
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaf41ff1b8ff6c33ff27767ff8fba44d0b">  124</a></span>&#160;      <a class="code" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaf41ff1b8ff6c33ff27767ff8fba44d0b">ST_REFRESH_NOCHANGE</a>,        <span class="comment">//&lt; no updates required</span></div>
<div class="line"><a name="l00125"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda527eb1c798a470e7d631b0b384116eca">  125</a></span>&#160;      <a class="code" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda527eb1c798a470e7d631b0b384116eca">ST_REFRESH_CHANGED</a>,         <span class="comment">//&lt; some parameters were updated, but pipeline is ok</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda5748a51091a989de431a1d26de70c0ad">  126</a></span>&#160;      <a class="code" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda5748a51091a989de431a1d26de70c0ad">ST_REFRESH_CHANGEINVALID</a>,   <span class="comment">//&lt; updating made pipeline invalid</span></div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaa2f5a4dee2c38e5e32d6ff3db60b9e0d">  127</a></span>&#160;      ST_REFRESH_REMAINSINVALID   <span class="comment">//&lt; pipeline was not valid before and is invalid afterwards</span></div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    };</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a8068b13ebc425362af36a54b7add2dbd">  132</a></span>&#160;    <span class="keyword">typedef</span> QList&lt;TOPPASEdge *&gt; <a class="code" href="classOpenMS_1_1TOPPASScene.html#a8068b13ebc425362af36a54b7add2dbd">EdgeContainer</a>;</div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#ad941ea70c82eb56530cc0906d089b2bc">  134</a></span>&#160;    <span class="keyword">typedef</span> EdgeContainer::iterator <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad941ea70c82eb56530cc0906d089b2bc">EdgeIterator</a>;</div>
<div class="line"><a name="l00136"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a83caa7d22f7c981fe8072373b7a62d07">  136</a></span>&#160;    <span class="keyword">typedef</span> EdgeContainer::const_iterator <a class="code" href="classOpenMS_1_1TOPPASScene.html#a83caa7d22f7c981fe8072373b7a62d07">ConstEdgeIterator</a>;</div>
<div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#af2c7e1aa90a04a7ebbd2c052ee18d658">  138</a></span>&#160;    <span class="keyword">typedef</span> QList&lt;TOPPASVertex *&gt; <a class="code" href="classOpenMS_1_1TOPPASScene.html#af2c7e1aa90a04a7ebbd2c052ee18d658">VertexContainer</a>;</div>
<div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#ad6b9a8b0b3b4163135e3a4eddf5fd5c6">  140</a></span>&#160;    <span class="keyword">typedef</span> VertexContainer::iterator <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad6b9a8b0b3b4163135e3a4eddf5fd5c6">VertexIterator</a>;</div>
<div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a6219f01696724dc7f83a967a0f9797a7">  142</a></span>&#160;    <span class="keyword">typedef</span> VertexContainer::const_iterator <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6219f01696724dc7f83a967a0f9797a7">ConstVertexIterator</a>;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a>(<a class="code" href="classQObject.html">QObject</a> * parent, <span class="keyword">const</span> QString &amp; tmp_path, <span class="keywordtype">bool</span> gui = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a>();</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    <span class="keywordtype">void</span> addVertex(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * tv);</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;    <span class="keywordtype">void</span> addEdge(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * te);</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    <span class="keywordtype">void</span> setActionMode(<a class="code" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> mode);</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> getActionMode();</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad6b9a8b0b3b4163135e3a4eddf5fd5c6">VertexIterator</a> verticesBegin();</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad6b9a8b0b3b4163135e3a4eddf5fd5c6">VertexIterator</a> verticesEnd();</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad941ea70c82eb56530cc0906d089b2bc">EdgeIterator</a> edgesBegin();</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad941ea70c82eb56530cc0906d089b2bc">EdgeIterator</a> edgesEnd();</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    <span class="keywordtype">void</span> copySelected();</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    <span class="keywordtype">void</span> paste(QPointF pos = QPointF());</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    <span class="keywordtype">void</span> removeSelected();</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    <span class="keywordtype">void</span> unselectAll();</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    <span class="keywordtype">void</span> updateEdgeColors();</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    <span class="keywordtype">void</span> resetDownstream(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * vertex);</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="keywordtype">void</span> runPipeline();</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="keywordtype">bool</span> store(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; file);</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    <span class="keywordtype">void</span> load(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; file);</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    <span class="keywordtype">void</span> include(<a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> * new_scene, QPointF pos = QPointF());</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; getSaveFileName();</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;    <span class="keywordtype">void</span> setSaveFileName(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; name);</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;    <span class="keywordtype">void</span> topoSort();</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;    <span class="keyword">const</span> QString &amp; getOutDir();</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;    <span class="keyword">const</span> QString &amp; getTempDir();</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;    <span class="keywordtype">void</span> setOutDir(<span class="keyword">const</span> QString &amp; dir);</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;    <span class="keywordtype">bool</span> saveIfChanged();</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;    <span class="keywordtype">void</span> setChanged(<span class="keywordtype">bool</span> b);</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;    <span class="keywordtype">bool</span> isPipelineRunning();</div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;    <span class="keywordtype">bool</span> askForOutputDir(<span class="keywordtype">bool</span> always_ask = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;    <span class="keywordtype">void</span> enqueueProcess(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html">TOPPProcess</a> &amp; process);</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;    <span class="keywordtype">void</span> runNextProcess();</div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;    <span class="keywordtype">void</span> resetProcessesQueue();</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    <span class="keywordtype">void</span> setClipboard(<a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> * clipboard);</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    <span class="keywordtype">void</span> connectVertexSignals(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * tv);</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    <span class="keywordtype">void</span> connectToolVertexSignals(<a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> * ttv);</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <span class="keywordtype">void</span> connectOutputVertexSignals(<a class="code" href="classOpenMS_1_1TOPPASOutputFileListVertex.html">TOPPASOutputFileListVertex</a> * oflv);</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;    <span class="keywordtype">void</span> connectMergerVertexSignals(<a class="code" href="classOpenMS_1_1TOPPASMergerVertex.html">TOPPASMergerVertex</a> * tmv);</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;    <span class="keywordtype">void</span> connectEdgeSignals(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * e);</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    <span class="keywordtype">void</span> loadResources(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASResources.html">TOPPASResources</a> &amp; resources);</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;    <span class="keywordtype">void</span> createResources(<a class="code" href="classOpenMS_1_1TOPPASResources.html">TOPPASResources</a> &amp; resources);</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;    <span class="keywordtype">bool</span> wasChanged();</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cd">RefreshStatus</a> refreshParameters();</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    <span class="keywordtype">bool</span> isDryRun() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    QString getDescription() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;    <span class="keywordtype">void</span> setDescription(<span class="keyword">const</span> QString &amp; desc);</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    <span class="keywordtype">void</span> setAllowedThreads(<span class="keywordtype">int</span> num_threads);</div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a>* getHoveringEdge();</div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;    <span class="keywordtype">void</span> checkIfWeAreDone();</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;</div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;</div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;<span class="keyword">public</span> slots:</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;    <span class="keywordtype">void</span> abortPipeline();</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;    <span class="keywordtype">void</span> itemClicked();</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;    <span class="keywordtype">void</span> itemReleased();</div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;    <span class="keywordtype">void</span> updateHoveringEdgePos(<span class="keyword">const</span> QPointF &amp; new_pos);</div>
<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;    <span class="keywordtype">void</span> addHoveringEdge(<span class="keyword">const</span> QPointF &amp; pos);</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;    <span class="keywordtype">void</span> finishHoveringEdge();</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;    <span class="keywordtype">void</span> pipelineErrorSlot(<span class="keyword">const</span> QString msg = <span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;    <span class="keywordtype">void</span> moveSelectedItems(qreal dx, qreal dy);</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;    <span class="keywordtype">void</span> snapToGrid();</div>
<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    <span class="keywordtype">void</span> setPipelineRunning(<span class="keywordtype">bool</span> b = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;    <span class="keywordtype">void</span> changedParameter(<span class="keyword">const</span> <span class="keywordtype">bool</span> invalidates_running_pipeline);</div>
<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;    <span class="keywordtype">void</span> processFinished();</div>
<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;    <span class="keywordtype">void</span> quitWithError();</div>
<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;</div>
<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;</div>
<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;</div>
<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;    <span class="keywordtype">void</span> logTOPPOutput(<span class="keyword">const</span> QString &amp; out);</div>
<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;    <span class="keywordtype">void</span> logToolStarted();</div>
<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;    <span class="keywordtype">void</span> logToolFinished();</div>
<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;    <span class="keywordtype">void</span> logToolFailed();</div>
<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;    <span class="keywordtype">void</span> logToolCrashed();</div>
<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;    <span class="keywordtype">void</span> logOutputFileWritten(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; file);</div>
<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;</div>
<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;signals:</div>
<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;</div>
<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;    <span class="keywordtype">void</span> entirePipelineFinished();</div>
<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;    <span class="keywordtype">void</span> pipelineExecutionFailed();</div>
<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;    <span class="keywordtype">void</span> saveMe();</div>
<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;    <span class="keywordtype">void</span> terminateCurrentPipeline();</div>
<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    <span class="keywordtype">void</span> selectionCopied(<a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> * ts);</div>
<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    <span class="keywordtype">void</span> requestClipboardContent();</div>
<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;    <span class="keywordtype">void</span> mainWindowNeedsUpdate();</div>
<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;    <span class="keywordtype">void</span> openInTOPPView(QStringList all_files);</div>
<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;    <span class="keywordtype">void</span> dryRunFinished(<span class="keywordtype">int</span>, QProcess::ExitStatus);</div>
<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;    <span class="keywordtype">void</span> messageReady(<span class="keyword">const</span> QString &amp; msg);</div>
<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;</div>
<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;</div>
<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;</div>
<div class="line"><a name="l00320"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a5c5b85867e6d864f05dc38509ee94550">  320</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a5c5b85867e6d864f05dc38509ee94550">action_mode_</a>;</div>
<div class="line"><a name="l00322"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a87a591cfb3ec89f5341d2a1263092797">  322</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#af2c7e1aa90a04a7ebbd2c052ee18d658">VertexContainer</a> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a87a591cfb3ec89f5341d2a1263092797">vertices_</a>;</div>
<div class="line"><a name="l00324"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a2616a7f37693c40a6c12195f3b03b1ec">  324</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html#a8068b13ebc425362af36a54b7add2dbd">EdgeContainer</a> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a2616a7f37693c40a6c12195f3b03b1ec">edges_</a>;</div>
<div class="line"><a name="l00326"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a27ea163460ccfa3707e1471882466c3c">  326</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * <a class="code" href="classOpenMS_1_1TOPPASScene.html#a27ea163460ccfa3707e1471882466c3c">hover_edge_</a>;</div>
<div class="line"><a name="l00328"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a4532c1589e4e95c8dc97e7429ccd37c2">  328</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * <a class="code" href="classOpenMS_1_1TOPPASScene.html#a4532c1589e4e95c8dc97e7429ccd37c2">potential_target_</a>;</div>
<div class="line"><a name="l00330"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#ab1dff810253289dffadf30a42c135f45">  330</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPASScene.html#ab1dff810253289dffadf30a42c135f45">file_name_</a>;</div>
<div class="line"><a name="l00332"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a912484a8b40a4a8ff8190c589d054d5b">  332</a></span>&#160;    QString <a class="code" href="classOpenMS_1_1TOPPASScene.html#a912484a8b40a4a8ff8190c589d054d5b">tmp_path_</a>;</div>
<div class="line"><a name="l00334"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a6a789409643813343f2f3877075e3569">  334</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a6a789409643813343f2f3877075e3569">gui_</a>;</div>
<div class="line"><a name="l00336"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#ad8747534b97b01488eff0ee10cc4482d">  336</a></span>&#160;    QString <a class="code" href="classOpenMS_1_1TOPPASScene.html#ad8747534b97b01488eff0ee10cc4482d">out_dir_</a>;</div>
<div class="line"><a name="l00338"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a8ae5d1a64cdb1fbaa92d334664e1370d">  338</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a8ae5d1a64cdb1fbaa92d334664e1370d">changed_</a>;</div>
<div class="line"><a name="l00340"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#aa440b02cc99bc6923375b0c9db2f2dca">  340</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#aa440b02cc99bc6923375b0c9db2f2dca">running_</a>;</div>
<div class="line"><a name="l00342"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a376e559cd8479085b50e5db39c99c70b">  342</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a376e559cd8479085b50e5db39c99c70b">error_occured_</a>;</div>
<div class="line"><a name="l00344"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a4ba07d25794391136e46f447a5f31529">  344</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a4ba07d25794391136e46f447a5f31529">user_specified_out_dir_</a>;</div>
<div class="line"><a name="l00346"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a3f78ed1db1460a2838500201ac25518e">  346</a></span>&#160;    QList&lt;TOPPProcess&gt; <a class="code" href="classOpenMS_1_1TOPPASScene.html#a3f78ed1db1460a2838500201ac25518e">topp_processes_queue_</a>;</div>
<div class="line"><a name="l00348"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a7ee95eb7fbf6c27e342d0cff6c1415c8">  348</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> * <a class="code" href="classOpenMS_1_1TOPPASScene.html#a7ee95eb7fbf6c27e342d0cff6c1415c8">clipboard_</a>;</div>
<div class="line"><a name="l00350"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a5fb500b2b5ae3b5f0d91afae0fbc776e">  350</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a5fb500b2b5ae3b5f0d91afae0fbc776e">dry_run_</a>;</div>
<div class="line"><a name="l00352"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a8f4e31fa1cf60984c20e17cc407654c5">  352</a></span>&#160;    <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a8f4e31fa1cf60984c20e17cc407654c5">threads_active_</a>;</div>
<div class="line"><a name="l00354"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#aa36136e70b3fec41d5f0008cde570a08">  354</a></span>&#160;    QString <a class="code" href="classOpenMS_1_1TOPPASScene.html#aa36136e70b3fec41d5f0008cde570a08">description_text_</a>;</div>
<div class="line"><a name="l00356"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#a1a608d1003390c3ac88a925b9a0a1da2">  356</a></span>&#160;    <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TOPPASScene.html#a1a608d1003390c3ac88a925b9a0a1da2">allowed_threads_</a>;</div>
<div class="line"><a name="l00358"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASScene.html#ae53b40f3518e3b805bfc2c591125f17f">  358</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a>* <a class="code" href="classOpenMS_1_1TOPPASScene.html#ae53b40f3518e3b805bfc2c591125f17f">resume_source_</a>;</div>
<div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;</div>
<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * getVertexAt_(<span class="keyword">const</span> QPointF &amp; pos);</div>
<div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;    <span class="keywordtype">bool</span> isEdgeAllowed_(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * u, <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * v);</div>
<div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;    <span class="keywordtype">bool</span> dfsVisit_(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * vertex);</div>
<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;    <span class="keywordtype">bool</span> sanityCheck_(<span class="keywordtype">bool</span> allowUserOverride);</div>
<div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160;</div>
<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;</div>
<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;    <span class="keywordtype">void</span> contextMenuEvent(QGraphicsSceneContextMenuEvent * event);</div>
<div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;</div>
<div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;    <span class="keywordtype">void</span> writeToLogFile_(<span class="keyword">const</span> QString &amp; text);</div>
<div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;  };</div>
<div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;</div>
<div class="line"><a name="l00379"></a><span class="lineno">  379</span>&#160;}</div>
<div class="line"><a name="l00380"></a><span class="lineno">  380</span>&#160;</div>
<div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a4ba07d25794391136e46f447a5f31529"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a4ba07d25794391136e46f447a5f31529">OpenMS::TOPPASScene::user_specified_out_dir_</a></div><div class="ttdeci">bool user_specified_out_dir_</div><div class="ttdoc">Indicates if the output directory has been specified by the user already. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:344</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html">OpenMS::TOPPASScene</a></div><div class="ttdoc">A container for all visual items of a TOPPAS workflow. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:84</div></div>
<div class="ttc" id="classQGraphicsScene_html"><div class="ttname"><a href="classQGraphicsScene.html">QGraphicsScene</a></div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html">OpenMS::TOPPASToolVertex</a></div><div class="ttdoc">A vertex representing a TOPP tool. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:55</div></div>
<div class="ttc" id="TOPPASToolVertex_8h_html"><div class="ttname"><a href="TOPPASToolVertex_8h.html">TOPPASToolVertex.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html_ae1967dafb032752ce64bea2b04a8aaca"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ae1967dafb032752ce64bea2b04a8aaca">OpenMS::TOPPASScene::TOPPProcess::proc</a></div><div class="ttdeci">QProcess * proc</div><div class="ttdoc">The process. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a8ae5d1a64cdb1fbaa92d334664e1370d"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a8ae5d1a64cdb1fbaa92d334664e1370d">OpenMS::TOPPASScene::changed_</a></div><div class="ttdeci">bool changed_</div><div class="ttdoc">Flag that indicates if the pipeline has been changed since the last save. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:338</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_af2c7e1aa90a04a7ebbd2c052ee18d658"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#af2c7e1aa90a04a7ebbd2c052ee18d658">OpenMS::TOPPASScene::VertexContainer</a></div><div class="ttdeci">QList&lt; TOPPASVertex * &gt; VertexContainer</div><div class="ttdoc">The container for vertices. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:138</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASResources_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASResources.html">OpenMS::TOPPASResources</a></div><div class="ttdoc">A dictionary mapping string keys to lists of TOPPASResource objects. </div><div class="ttdef"><b>Definition:</b> TOPPASResources.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html">OpenMS::TOPPASVertex</a></div><div class="ttdoc">The base class of the different vertex classes. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a8f4e31fa1cf60984c20e17cc407654c5"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a8f4e31fa1cf60984c20e17cc407654c5">OpenMS::TOPPASScene::threads_active_</a></div><div class="ttdeci">int threads_active_</div><div class="ttdoc">currently running processes... </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:352</div></div>
<div class="ttc" id="TOPPASEdge_8h_html"><div class="ttname"><a href="TOPPASEdge_8h.html">TOPPASEdge.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a4532c1589e4e95c8dc97e7429ccd37c2"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a4532c1589e4e95c8dc97e7429ccd37c2">OpenMS::TOPPASScene::potential_target_</a></div><div class="ttdeci">TOPPASVertex * potential_target_</div><div class="ttdoc">The current potential target vertex of the hovering edge. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:328</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_ad8747534b97b01488eff0ee10cc4482d"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#ad8747534b97b01488eff0ee10cc4482d">OpenMS::TOPPASScene::out_dir_</a></div><div class="ttdeci">QString out_dir_</div><div class="ttdoc">The directory where the output files will be written. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:336</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a376e559cd8479085b50e5db39c99c70b"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a376e559cd8479085b50e5db39c99c70b">OpenMS::TOPPASScene::error_occured_</a></div><div class="ttdeci">bool error_occured_</div><div class="ttdoc">true if an error occurred during pipeline execution </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:342</div></div>
<div class="ttc" id="classOpenMS_1_1FakeProcess_html"><div class="ttname"><a href="classOpenMS_1_1FakeProcess.html">OpenMS::FakeProcess</a></div><div class="ttdoc">A FakeProcess class. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a6cc566e3bbfdcb8a5a9d85941238cef5"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">OpenMS::TOPPASScene::ActionMode</a></div><div class="ttdeci">ActionMode</div><div class="ttdoc">The current action mode (creation of a new edge, or panning of the widget) </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:114</div></div>
<div class="ttc" id="classQObject_html"><div class="ttname"><a href="classQObject.html">QObject</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a8068b13ebc425362af36a54b7add2dbd"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a8068b13ebc425362af36a54b7add2dbd">OpenMS::TOPPASScene::EdgeContainer</a></div><div class="ttdeci">QList&lt; TOPPASEdge * &gt; EdgeContainer</div><div class="ttdoc">The container for edges. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:132</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASEdge_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASEdge.html">OpenMS::TOPPASEdge</a></div><div class="ttdoc">An edge representing a data flow in TOPPAS. </div><div class="ttdef"><b>Definition:</b> TOPPASEdge.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a5fb500b2b5ae3b5f0d91afae0fbc776e"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a5fb500b2b5ae3b5f0d91afae0fbc776e">OpenMS::TOPPASScene::dry_run_</a></div><div class="ttdeci">bool dry_run_</div><div class="ttdoc">dry run mode (no tools are actually called) </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:350</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html">OpenMS::TOPPASScene::TOPPProcess</a></div><div class="ttdoc">Stores the information for a TOPP process. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:92</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html_a0ce5c91df58ba9df87bae973065b89bd"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a0ce5c91df58ba9df87bae973065b89bd">OpenMS::TOPPASScene::TOPPProcess::tv</a></div><div class="ttdeci">TOPPASToolVertex * tv</div><div class="ttdoc">The tool which is started (used to call its slots) </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:110</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html_ab8db4e98185d649f82f10967744b52fd"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ab8db4e98185d649f82f10967744b52fd">OpenMS::TOPPASScene::TOPPProcess::args</a></div><div class="ttdeci">QStringList args</div><div class="ttdoc">The arguments. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a3f78ed1db1460a2838500201ac25518e"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a3f78ed1db1460a2838500201ac25518e">OpenMS::TOPPASScene::topp_processes_queue_</a></div><div class="ttdeci">QList&lt; TOPPProcess &gt; topp_processes_queue_</div><div class="ttdoc">The queue of pending TOPP processes. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:346</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a0963847e7748fbbad3036d73a5d219cda5748a51091a989de431a1d26de70c0ad"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda5748a51091a989de431a1d26de70c0ad">OpenMS::TOPPASScene::ST_REFRESH_CHANGEINVALID</a></div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:126</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html_af181393a96252f2adba728112374972b"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#af181393a96252f2adba728112374972b">OpenMS::TOPPASScene::TOPPProcess::TOPPProcess</a></div><div class="ttdeci">TOPPProcess(QProcess *p, const QString &amp;cmd, const QStringList &amp;arg, TOPPASToolVertex *const tool)</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:95</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_ab1dff810253289dffadf30a42c135f45"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#ab1dff810253289dffadf30a42c135f45">OpenMS::TOPPASScene::file_name_</a></div><div class="ttdeci">String file_name_</div><div class="ttdoc">The file name of this pipeline. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:330</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a1a608d1003390c3ac88a925b9a0a1da2"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a1a608d1003390c3ac88a925b9a0a1da2">OpenMS::TOPPASScene::allowed_threads_</a></div><div class="ttdeci">int allowed_threads_</div><div class="ttdoc">maximum number of allowed threads </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:356</div></div>
<div class="ttc" id="classOpenMS_1_1FakeProcess_html_ab1206bc7c74fd1ac80f182de405f7b3d"><div class="ttname"><a href="classOpenMS_1_1FakeProcess.html#ab1206bc7c74fd1ac80f182de405f7b3d">OpenMS::FakeProcess::start</a></div><div class="ttdeci">virtual void start(const QString &amp;program, const QStringList &amp;arguments, OpenMode mode=ReadWrite)</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a6219f01696724dc7f83a967a0f9797a7"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a6219f01696724dc7f83a967a0f9797a7">OpenMS::TOPPASScene::ConstVertexIterator</a></div><div class="ttdeci">VertexContainer::const_iterator ConstVertexIterator</div><div class="ttdoc">A const iterator for vertices. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:142</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a0963847e7748fbbad3036d73a5d219cdaf41ff1b8ff6c33ff27767ff8fba44d0b"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaf41ff1b8ff6c33ff27767ff8fba44d0b">OpenMS::TOPPASScene::ST_REFRESH_NOCHANGE</a></div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:124</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a0963847e7748fbbad3036d73a5d219cd"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cd">OpenMS::TOPPASScene::RefreshStatus</a></div><div class="ttdeci">RefreshStatus</div><div class="ttdoc">Pipeline status after refreshParameters() was called. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:122</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a27ea163460ccfa3707e1471882466c3c"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a27ea163460ccfa3707e1471882466c3c">OpenMS::TOPPASScene::hover_edge_</a></div><div class="ttdeci">TOPPASEdge * hover_edge_</div><div class="ttdoc">The hovering edge which is currently being created. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:326</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASOutputFileListVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASOutputFileListVertex.html">OpenMS::TOPPASOutputFileListVertex</a></div><div class="ttdoc">A vertex representing an output file list. </div><div class="ttdef"><b>Definition:</b> TOPPASOutputFileListVertex.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_ae53b40f3518e3b805bfc2c591125f17f"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#ae53b40f3518e3b805bfc2c591125f17f">OpenMS::TOPPASScene::resume_source_</a></div><div class="ttdeci">TOPPASToolVertex * resume_source_</div><div class="ttdoc">last node where &amp;#39;resume&amp;#39; was started </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:358</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a87a591cfb3ec89f5341d2a1263092797"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a87a591cfb3ec89f5341d2a1263092797">OpenMS::TOPPASScene::vertices_</a></div><div class="ttdeci">VertexContainer vertices_</div><div class="ttdoc">The list of all vertices. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:322</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a0963847e7748fbbad3036d73a5d219cda527eb1c798a470e7d631b0b384116eca"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda527eb1c798a470e7d631b0b384116eca">OpenMS::TOPPASScene::ST_REFRESH_CHANGED</a></div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:125</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_aa440b02cc99bc6923375b0c9db2f2dca"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#aa440b02cc99bc6923375b0c9db2f2dca">OpenMS::TOPPASScene::running_</a></div><div class="ttdeci">bool running_</div><div class="ttdoc">Indicates if a pipeline is currently running. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:340</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASMergerVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASMergerVertex.html">OpenMS::TOPPASMergerVertex</a></div><div class="ttdoc">A special vertex that allows to merge several inputs. </div><div class="ttdef"><b>Definition:</b> TOPPASMergerVertex.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_ad6b9a8b0b3b4163135e3a4eddf5fd5c6"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#ad6b9a8b0b3b4163135e3a4eddf5fd5c6">OpenMS::TOPPASScene::VertexIterator</a></div><div class="ttdeci">VertexContainer::iterator VertexIterator</div><div class="ttdoc">A mutable iterator for vertices. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a6cc566e3bbfdcb8a5a9d85941238cef5a5ba5558f7aa32a11abc3c49c1180c1ae"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a5ba5558f7aa32a11abc3c49c1180c1ae">OpenMS::TOPPASScene::AM_NEW_EDGE</a></div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:116</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASScene_1_1TOPPProcess_html_a1db826cabd271c1931e78ebc1560604c"><div class="ttname"><a href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#a1db826cabd271c1931e78ebc1560604c">OpenMS::TOPPASScene::TOPPProcess::command</a></div><div class="ttdeci">QString command</div><div class="ttdoc">The command. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:106</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a2616a7f37693c40a6c12195f3b03b1ec"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a2616a7f37693c40a6c12195f3b03b1ec">OpenMS::TOPPASScene::edges_</a></div><div class="ttdeci">EdgeContainer edges_</div><div class="ttdoc">The list of all edges. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:324</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_ad941ea70c82eb56530cc0906d089b2bc"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#ad941ea70c82eb56530cc0906d089b2bc">OpenMS::TOPPASScene::EdgeIterator</a></div><div class="ttdeci">EdgeContainer::iterator EdgeIterator</div><div class="ttdoc">A mutable iterator for edges. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:134</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a6a789409643813343f2f3877075e3569"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a6a789409643813343f2f3877075e3569">OpenMS::TOPPASScene::gui_</a></div><div class="ttdeci">bool gui_</div><div class="ttdoc">Are we in a GUI or is the scene used by ExecutePipeline (at the command line)? </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:334</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a83caa7d22f7c981fe8072373b7a62d07"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a83caa7d22f7c981fe8072373b7a62d07">OpenMS::TOPPASScene::ConstEdgeIterator</a></div><div class="ttdeci">EdgeContainer::const_iterator ConstEdgeIterator</div><div class="ttdoc">A const iterator for edges. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:136</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a7ee95eb7fbf6c27e342d0cff6c1415c8"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a7ee95eb7fbf6c27e342d0cff6c1415c8">OpenMS::TOPPASScene::clipboard_</a></div><div class="ttdeci">TOPPASScene * clipboard_</div><div class="ttdoc">Stores the clipboard content when requested from TOPPASBase. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:348</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_aa36136e70b3fec41d5f0008cde570a08"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#aa36136e70b3fec41d5f0008cde570a08">OpenMS::TOPPASScene::description_text_</a></div><div class="ttdeci">QString description_text_</div><div class="ttdoc">description text </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:354</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a5c5b85867e6d864f05dc38509ee94550"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a5c5b85867e6d864f05dc38509ee94550">OpenMS::TOPPASScene::action_mode_</a></div><div class="ttdeci">ActionMode action_mode_</div><div class="ttdoc">The current action mode. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:320</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="classQProcess_html"><div class="ttname"><a href="classQProcess.html">QProcess</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASScene_html_a912484a8b40a4a8ff8190c589d054d5b"><div class="ttname"><a href="classOpenMS_1_1TOPPASScene.html#a912484a8b40a4a8ff8190c589d054d5b">OpenMS::TOPPASScene::tmp_path_</a></div><div class="ttdeci">QString tmp_path_</div><div class="ttdoc">The path for temporary files. </div><div class="ttdef"><b>Definition:</b> TOPPASScene.h:332</div></div>
</div><!-- fragment --></div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:22 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>