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<a href="TOPPASToolVertex_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
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<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Johannes Junker $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Johannes Junker, Chris Bielow $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_VISUAL_TOPPASTOOLVERTEX_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_TOPPASTOOLVERTEX_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="TOPPASVertex_8h.html">OpenMS/VISUAL/TOPPASVertex.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Param_8h.html">OpenMS/DATASTRUCTURES/Param.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;QtCore/QVector&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;{</div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html">   55</a></span>&#160;  <span class="keyword">class </span>OPENMS_GUI_DLLAPI <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> :</div>
<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a></div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;  {</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;    Q_OBJECT</div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#abbf282fae8bd1b25f3ca8154fc76f4e3a463fe315d09df3d92883c1192f1a730d">   62</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#abbf282fae8bd1b25f3ca8154fc76f4e3">TOOLSTATUS</a> {TOOL_READY, TOOL_SCHEDULED, TOOL_RUNNING, TOOL_SUCCESS, TOOL_CRASH, TOOLSTATUS_SIZE};</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">   65</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">IOInfo</a></div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    {</div>
<div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aad3eb9372c3d5f8c894755c3cdee5726">   68</a></span>&#160;      <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aad3eb9372c3d5f8c894755c3cdee5726">IOInfo</a>() :</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        type(IOT_FILE),</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;        param_name(),</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        valid_types()</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;      {</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;      }</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;</div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aec3ab3bd3d121f26ec53a64d66e679d9">   76</a></span>&#160;      <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aec3ab3bd3d121f26ec53a64d66e679d9">IOInfo</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">IOInfo</a> &amp; rhs) :</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        type(rhs.type),</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        param_name(rhs.param_name),</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;        valid_types(rhs.valid_types)</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;      {</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;      }</div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507">   84</a></span>&#160;      <span class="keyword">enum</span> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507">IOType</a></div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;      {</div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507ae4e0cb071e8a9bd467d603baf9fbf1db">   86</a></span>&#160;        <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507ae4e0cb071e8a9bd467d603baf9fbf1db">IOT_FILE</a>,</div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507aaae24d34e54746d97468e5a9b7025407">   87</a></span>&#160;        IOT_LIST</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;      };</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a62169d005a69a85f0cf2fe4a1def97c8">   91</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a62169d005a69a85f0cf2fe4a1def97c8">operator&lt;</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">IOInfo</a> &amp; rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <span class="keywordflow">if</span> (type != rhs.<a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#ae6cfa1c1ad8b330bf42226d9becd5ac9">type</a>)</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        {</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;          <span class="keywordflow">return</span> type == IOT_FILE;</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        }</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        {</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;          <span class="keywordflow">return</span> param_name.compare(rhs.<a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">param_name</a>) &lt; 0;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;        }</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      }</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a69fdeb81c750b26874b8a432b072d9a0">  104</a></span>&#160;      <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">IOInfo</a> &amp; <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a69fdeb81c750b26874b8a432b072d9a0">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">IOInfo</a> &amp; rhs)</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;      {</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;        type = rhs.<a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#ae6cfa1c1ad8b330bf42226d9becd5ac9">type</a>;</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        param_name = rhs.<a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">param_name</a>;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        valid_types = rhs.<a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a6ff6f8691e458243da35f93aefe900d6">valid_types</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;      }</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#ae6cfa1c1ad8b330bf42226d9becd5ac9">  114</a></span>&#160;      <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507">IOType</a> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#ae6cfa1c1ad8b330bf42226d9becd5ac9">type</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">  116</a></span>&#160;      <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">param_name</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a6ff6f8691e458243da35f93aefe900d6">  118</a></span>&#160;      <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> <a class="code" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a6ff6f8691e458243da35f93aefe900d6">valid_types</a>;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;    };</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a>();</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; name, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; type = <span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> &amp; rhs);</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a>();</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a> &amp; rhs);</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1String.html">String</a> getName() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; getType() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    <span class="keywordtype">void</span> getInputParameters(QVector&lt;IOInfo&gt; &amp; input_infos) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    <span class="keywordtype">void</span> getOutputParameters(QVector&lt;IOInfo&gt; &amp; output_infos) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;    <span class="comment">// documented in base class</span></div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> paint(QPainter * painter, <span class="keyword">const</span> QStyleOptionGraphicsItem * option, <a class="code" href="classQWidget.html">QWidget</a> * widget);</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;    <span class="comment">// documented in base class</span></div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;    <span class="keyword">virtual</span> QRectF boundingRect() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;    <span class="comment">// documented in base class</span></div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;    <span class="keyword">virtual</span> QPainterPath shape() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    <span class="comment">// documented in base class</span></div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> setTopoNr(<a class="code" href="classunsigned_01int.html">UInt</a> nr);</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;    <span class="comment">// documented in base class</span></div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> reset(<span class="keywordtype">bool</span> reset_all_files = <span class="keyword">false</span>);</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    <span class="keywordtype">void</span> setParam(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; param);</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; getParam();</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    <span class="keywordtype">void</span> run();</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    <span class="keywordtype">bool</span> updateCurrentOutputFileNames(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4">RoundPackages</a> &amp; pkg, <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; error_message);</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#abbf282fae8bd1b25f3ca8154fc76f4e3">TOOLSTATUS</a> getStatus() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    <span class="keywordtype">void</span> editParam();</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    <span class="keywordtype">int</span> numIterations();</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> getFullOutputDirectory() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> getOutputDir() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    <span class="keywordtype">void</span> createDirs();</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    <span class="keywordtype">void</span> openContainingFolder();</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    <span class="keywordtype">void</span> openInTOPPView();</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    <span class="keywordtype">bool</span> refreshParameters();</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="keywordtype">bool</span> isToolReady() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="keywordtype">void</span> toggleBreakpoint();</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> emitToolStarted();</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">bool</span> invertRecylingMode();</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;<span class="keyword">public</span> slots:</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;    <span class="keywordtype">void</span> executionFinished(<span class="keywordtype">int</span> ec, QProcess::ExitStatus es);</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;    <span class="keywordtype">void</span> forwardTOPPOutput();</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    <span class="keywordtype">void</span> toolStartedSlot();</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;    <span class="keywordtype">void</span> toolFinishedSlot();</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;    <span class="keywordtype">void</span> toolCrashedSlot();</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;    <span class="keywordtype">void</span> toolFailedSlot();</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> toolScheduledSlot();</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> inEdgeHasChanged();</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> outEdgeHasChanged();</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;signals:</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;</div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;    <span class="keywordtype">void</span> toolStarted();</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    <span class="keywordtype">void</span> toolFinished();</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    <span class="keywordtype">void</span> toolCrashed();</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    <span class="keywordtype">void</span> toolFailed(<span class="keyword">const</span> QString &amp; message = <span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <span class="keywordtype">void</span> toppOutputReady(<span class="keyword">const</span> QString &amp; out);</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    <span class="keywordtype">void</span> mouseDoubleClickEvent(QGraphicsSceneMouseEvent * e);</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;    <span class="keywordtype">bool</span> doesParamChangeInvalidate_();</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;    <span class="keywordtype">bool</span> renameOutput_();</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    <span class="keywordtype">bool</span> initParam_(<span class="keyword">const</span> QString &amp; old_ini_file = <span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    <span class="keywordtype">void</span> getParameters_(QVector&lt;IOInfo&gt; &amp; io_infos, <span class="keywordtype">bool</span> input_params) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;    <span class="keywordtype">void</span> writeParam_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Param.html">Param</a> &amp; param, <span class="keyword">const</span> QString &amp; ini_file);</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    QString toolnameWithWhitespacesForFancyWordWrapping_(QPainter * painter, <span class="keyword">const</span> QString &amp; str);</div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;</div>
<div class="line"><a name="l00242"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">  242</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">name_</a>;</div>
<div class="line"><a name="l00244"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#a0bfd23e2ac1b1a4933438d6080550d5f">  244</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#a0bfd23e2ac1b1a4933438d6080550d5f">type_</a>;</div>
<div class="line"><a name="l00246"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#ab563271358980127db4f8704bcca1dd5">  246</a></span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#ab563271358980127db4f8704bcca1dd5">tmp_path_</a>;</div>
<div class="line"><a name="l00248"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#a28c73e623c63a4fe3bfceb1ae8274f39">  248</a></span>&#160;    <a class="code" href="classOpenMS_1_1Param.html">Param</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a>;</div>
<div class="line"><a name="l00250"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#ad72e48c0fad454d56f6e61676114f307">  250</a></span>&#160;    <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#abbf282fae8bd1b25f3ca8154fc76f4e3">TOOLSTATUS</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#ad72e48c0fad454d56f6e61676114f307">status_</a>;</div>
<div class="line"><a name="l00252"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#a0ebddf22b9fb6da9b5c4ee736c596a7f">  252</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#a0ebddf22b9fb6da9b5c4ee736c596a7f">tool_ready_</a>;</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;</div>
<div class="line"><a name="l00255"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#aec6e105108a20f2ef42187af16212031">  255</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#aec6e105108a20f2ef42187af16212031">uid_</a>;</div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;</div>
<div class="line"><a name="l00258"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASToolVertex.html#a7f62aab871493a4c427aa90253c39c93">  258</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASToolVertex.html#a7f62aab871493a4c427aa90253c39c93">breakpoint_set_</a>;</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;</div>
<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    <span class="keywordtype">void</span> smartFileNames_(std::vector&lt; QStringList &gt;&amp; filenames);</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;  };</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;}</div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;</div>
<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a62169d005a69a85f0cf2fe4a1def97c8"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a62169d005a69a85f0cf2fe4a1def97c8">OpenMS::TOPPASToolVertex::IOInfo::operator&lt;</a></div><div class="ttdeci">bool operator&lt;(const IOInfo &amp;rhs) const </div><div class="ttdoc">Comparison operator. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html">OpenMS::TOPPASToolVertex</a></div><div class="ttdoc">A vertex representing a TOPP tool. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:55</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html">OpenMS::TOPPASToolVertex::IOInfo</a></div><div class="ttdoc">Stores the information for input/output files/lists. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:65</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html">OpenMS::TOPPASVertex</a></div><div class="ttdoc">The base class of the different vertex classes. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_a28c73e623c63a4fe3bfceb1ae8274f39"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#a28c73e623c63a4fe3bfceb1ae8274f39">OpenMS::TOPPASToolVertex::param_</a></div><div class="ttdeci">Param param_</div><div class="ttdoc">The parameters of the tool. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:248</div></div>
<div class="ttc" id="classQWidget_html"><div class="ttname"><a href="classQWidget.html">QWidget</a></div></div>
<div class="ttc" id="TOPPASVertex_8h_html"><div class="ttname"><a href="TOPPASVertex_8h.html">TOPPASVertex.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_ab563271358980127db4f8704bcca1dd5"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#ab563271358980127db4f8704bcca1dd5">OpenMS::TOPPASToolVertex::tmp_path_</a></div><div class="ttdeci">String tmp_path_</div><div class="ttdoc">The temporary path. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:246</div></div>
<div class="ttc" id="Param_8h_html"><div class="ttname"><a href="Param_8h.html">Param.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_a0ebddf22b9fb6da9b5c4ee736c596a7f"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#a0ebddf22b9fb6da9b5c4ee736c596a7f">OpenMS::TOPPASToolVertex::tool_ready_</a></div><div class="ttdeci">bool tool_ready_</div><div class="ttdoc">tool initialization status: if C&amp;#39;tor was successful in finding the TOPP tool, this is set to &amp;#39;true&amp;#39; ...</div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:252</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a2634dc8f796d724e921dc6a0edb43507ae4e0cb071e8a9bd467d603baf9fbf1db"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507ae4e0cb071e8a9bd467d603baf9fbf1db">OpenMS::TOPPASToolVertex::IOInfo::IOT_FILE</a></div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:86</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_a0bfd23e2ac1b1a4933438d6080550d5f"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#a0bfd23e2ac1b1a4933438d6080550d5f">OpenMS::TOPPASToolVertex::type_</a></div><div class="ttdeci">String type_</div><div class="ttdoc">The type of the tool, or &amp;quot;&amp;quot; if it does not have a type. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:244</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a6105e5f2708c2f3e7015b883e61728f4"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4">OpenMS::TOPPASVertex::RoundPackages</a></div><div class="ttdeci">std::vector&lt; RoundPackage &gt; RoundPackages</div><div class="ttdoc">all information a node needs to process all rounds </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:135</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a69fdeb81c750b26874b8a432b072d9a0"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a69fdeb81c750b26874b8a432b072d9a0">OpenMS::TOPPASToolVertex::IOInfo::operator=</a></div><div class="ttdeci">IOInfo &amp; operator=(const IOInfo &amp;rhs)</div><div class="ttdoc">Assignment operator. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:104</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_aec3ab3bd3d121f26ec53a64d66e679d9"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aec3ab3bd3d121f26ec53a64d66e679d9">OpenMS::TOPPASToolVertex::IOInfo::IOInfo</a></div><div class="ttdeci">IOInfo(const IOInfo &amp;rhs)</div><div class="ttdoc">Copy constructor. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:76</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_aad3eb9372c3d5f8c894755c3cdee5726"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#aad3eb9372c3d5f8c894755c3cdee5726">OpenMS::TOPPASToolVertex::IOInfo::IOInfo</a></div><div class="ttdeci">IOInfo()</div><div class="ttdoc">Standard constructor. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_a7f62aab871493a4c427aa90253c39c93"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#a7f62aab871493a4c427aa90253c39c93">OpenMS::TOPPASToolVertex::breakpoint_set_</a></div><div class="ttdeci">bool breakpoint_set_</div><div class="ttdoc">Breakpoint set? </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:258</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a2aaa1e5e4ead883b7c2fc505c3853133"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">OpenMS::TOPPASToolVertex::IOInfo::param_name</a></div><div class="ttdeci">String param_name</div><div class="ttdoc">The name of the parameter. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_aec6e105108a20f2ef42187af16212031"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#aec6e105108a20f2ef42187af16212031">OpenMS::TOPPASToolVertex::uid_</a></div><div class="ttdeci">static UInt uid_</div><div class="ttdoc">UID for output files. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:255</div></div>
<div class="ttc" id="classOpenMS_1_1StringList_html"><div class="ttname"><a href="classOpenMS_1_1StringList.html">OpenMS::StringList</a></div><div class="ttdoc">String list. </div><div class="ttdef"><b>Definition:</b> StringList.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a2634dc8f796d724e921dc6a0edb43507"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2634dc8f796d724e921dc6a0edb43507">OpenMS::TOPPASToolVertex::IOInfo::IOType</a></div><div class="ttdeci">IOType</div><div class="ttdoc">The type. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:84</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_ae6cfa1c1ad8b330bf42226d9becd5ac9"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#ae6cfa1c1ad8b330bf42226d9becd5ac9">OpenMS::TOPPASToolVertex::IOInfo::type</a></div><div class="ttdeci">IOType type</div><div class="ttdoc">The type of the parameter. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_abbf282fae8bd1b25f3ca8154fc76f4e3"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#abbf282fae8bd1b25f3ca8154fc76f4e3">OpenMS::TOPPASToolVertex::TOOLSTATUS</a></div><div class="ttdeci">TOOLSTATUS</div><div class="ttdoc">current status of the vertex </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_ad72e48c0fad454d56f6e61676114f307"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#ad72e48c0fad454d56f6e61676114f307">OpenMS::TOPPASToolVertex::status_</a></div><div class="ttdeci">TOOLSTATUS status_</div><div class="ttdoc">current status of the tool </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:250</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASToolVertex_html_a46d25a1d56b8ab56e84b8bd0c7581e8f"><div class="ttname"><a href="classOpenMS_1_1TOPPASToolVertex.html#a46d25a1d56b8ab56e84b8bd0c7581e8f">OpenMS::TOPPASToolVertex::name_</a></div><div class="ttdeci">String name_</div><div class="ttdoc">The name of the tool. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:242</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo_html_a6ff6f8691e458243da35f93aefe900d6"><div class="ttname"><a href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a6ff6f8691e458243da35f93aefe900d6">OpenMS::TOPPASToolVertex::IOInfo::valid_types</a></div><div class="ttdeci">StringList valid_types</div><div class="ttdoc">The valid file types for this parameter. </div><div class="ttdef"><b>Definition:</b> TOPPASToolVertex.h:118</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:22 using doxygen 1.8.5</font></TD>
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