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<a href="TOPPASVertex_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Johannes Junker $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Johannes Junker, Chris Bielow $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_VISUAL_TOPPASVERTEX_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_TOPPASVERTEX_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment">// ------------- DEBUGGING ----------------</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment">// ---- Uncomment to enable debug mode ----</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment">//#define TOPPAS_DEBUG</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment">// ----------------------------------------</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#ifdef TOPPAS_DEBUG</span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor"></span><span class="preprocessor">#define __DEBUG_BEGIN_METHOD__ \</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor"> { \</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor"> for (int dbg_indnt_cntr = 0; dbg_indnt_cntr < global_debug_indent_; ++dbg_indnt_cntr) \</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor"> { \</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor"> std::cout << " "; \</span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor"> } \</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor"> std::cout << "BEGIN [" << topo_nr_ << "] " << __PRETTY_FUNCTION__ << std::endl; \</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor"> ++global_debug_indent_; \</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="preprocessor"> }</span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="preprocessor">#define __DEBUG_END_METHOD__ \</span></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="preprocessor"> { \</span></div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="preprocessor"> --global_debug_indent_; \</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor"> if (global_debug_indent_ < 0) global_debug_indent_ = 0; \</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="preprocessor"> for (int dbg_indnt_cntr = 0; dbg_indnt_cntr < global_debug_indent_; ++dbg_indnt_cntr) \</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="preprocessor"> { \</span></div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="preprocessor"> std::cout << " "; \</span></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="preprocessor"> } \</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="preprocessor"> std::cout << "END [" << topo_nr_ << "] " << __PRETTY_FUNCTION__ << std::endl; \</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="preprocessor"> }</span></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="preprocessor"></span><span class="preprocessor">#else</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="TOPPASVertex_8h.html#ab10bbb16c5dcfcbc92479760840da65f"> 66</a></span> <span class="preprocessor"></span><span class="preprocessor">#define __DEBUG_BEGIN_METHOD__ {}</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="TOPPASVertex_8h.html#aaff7ad921ccab3dbb3adac3cb03791cd"> 67</a></span> <span class="preprocessor"></span><span class="preprocessor">#define __DEBUG_END_METHOD__ {}</span></div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="preprocessor"></span><span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="comment">// ----------------------------------------</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="preprocessor">#include <<a class="code" href="String_8h.html">OpenMS/DATASTRUCTURES/String.h</a>></span></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="preprocessor">#include <<a class="code" href="Map_8h.html">OpenMS/DATASTRUCTURES/Map.h</a>></span></div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <span class="preprocessor">#include <QtGui/QPainter></span></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="preprocessor">#include <QtGui/QPainterPath></span></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> <span class="preprocessor">#include <QtGui/QGraphicsSceneMouseEvent></span></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="preprocessor">#include <QtGui/QGraphicsSceneContextMenuEvent></span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="preprocessor">#include <QtGui/QGraphicsItem></span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="preprocessor">#include <QtCore/QProcess></span></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="preprocessor">#include <QtGui/QMenu></span></div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">class </span>TOPPASEdge;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html"> 98</a></span>  <span class="keyword">class </span>OPENMS_GUI_DLLAPI <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> :</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keyword">public</span> <a class="code" href="classQObject.html">QObject</a>,</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keyword">public</span> <a class="code" href="classQGraphicsItem.html">QGraphicsItem</a></div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  {</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  Q_OBJECT</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="comment">//Q_INTERFACES(QGraphicsItem) // works only >Qt4.6</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a8068b13ebc425362af36a54b7add2dbd"> 108</a></span>  <span class="keyword">typedef</span> QList<TOPPASEdge *> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a8068b13ebc425362af36a54b7add2dbd">EdgeContainer</a>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#ad941ea70c82eb56530cc0906d089b2bc"> 110</a></span>  <span class="keyword">typedef</span> EdgeContainer::iterator <a class="code" href="classOpenMS_1_1TOPPASVertex.html#ad941ea70c82eb56530cc0906d089b2bc">EdgeIterator</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a83caa7d22f7c981fe8072373b7a62d07"> 112</a></span>  <span class="keyword">typedef</span> EdgeContainer::const_iterator <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a83caa7d22f7c981fe8072373b7a62d07">ConstEdgeIterator</a>;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html"> 114</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html">VertexRoundPackage</a></div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  {</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a8e7055e841038469f160ac6f5b9b6e78"> 116</a></span>  <a class="code" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a8e7055e841038469f160ac6f5b9b6e78">VertexRoundPackage</a>() :</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  filenames(),</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  edge(0)</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  {</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  }</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a2f54c974d32ec466476023406adb3dc7"> 122</a></span>  QStringList <a class="code" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a2f54c974d32ec466476023406adb3dc7">filenames</a>; <span class="comment">//< filenames passed from upstream node in this round</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#ad80d70b40e4f86a076de6804b57dcb3b"> 123</a></span>  <a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * <a class="code" href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#ad80d70b40e4f86a076de6804b57dcb3b">edge</a>; <span class="comment">//< edge that connects the upstream node to the current one</span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  };</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> </div>
<div class="line"><a name="l00130"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a421aaf9392b96c06e334c6a148a04e93"> 130</a></span>  <span class="keyword">typedef</span> std::map<Int, VertexRoundPackage> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a421aaf9392b96c06e334c6a148a04e93">RoundPackage</a>;</div>
<div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#af3e4784ee641defd5b89fb1b51065d5a"> 131</a></span>  <span class="keyword">typedef</span> RoundPackage::const_iterator <a class="code" href="classOpenMS_1_1TOPPASVertex.html#af3e4784ee641defd5b89fb1b51065d5a">RoundPackageConstIt</a>;</div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a968be1628053bd7c083e363882af3971"> 132</a></span>  <span class="keyword">typedef</span> RoundPackage::iterator <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a968be1628053bd7c083e363882af3971">RoundPackageIt</a>;</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00135"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4"> 135</a></span>  <span class="keyword">typedef</span> std::vector<RoundPackage> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4">RoundPackages</a>;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56c"> 138</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56c">DFS_COLOR</a></div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  {</div>
<div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56cabf5ca9664a4b4725221e62c119d93fbd"> 140</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56cabf5ca9664a4b4725221e62c119d93fbd">DFS_WHITE</a>,</div>
<div class="line"><a name="l00141"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56ca6ab3395a32045dea10946797fc05df64"> 141</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56ca6ab3395a32045dea10946797fc05df64">DFS_GRAY</a>,</div>
<div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56ca5cb88acf50099424a53cdf7c867d5b66"> 142</a></span>  DFS_BLACK</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  };</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82d"> 146</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82d">SUBSTREESTATUS</a></div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  {</div>
<div class="line"><a name="l00148"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82da585f9f45bd1c9ee925bb2605e623ff74"> 148</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82da585f9f45bd1c9ee925bb2605e623ff74">TV_ALLFINISHED</a>, <span class="comment">// all downstream nodes are done (including the ones which are feed by a parallel subtree)</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82dad26a5b1c2e27d16a8a780e89a5ddc77c"> 149</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82dad26a5b1c2e27d16a8a780e89a5ddc77c">TV_UNFINISHED</a>, <span class="comment">// some direct downstream node is not done</span></div>
<div class="line"><a name="l00150"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82da9022c2a5f69b6bd4f761308fbccfd6ba"> 150</a></span>  TV_UNFINISHED_INBRANCH <span class="comment">// a parallel subtree which merged with some downstream node A was not done (which prevented processing of the node A)</span></div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  };</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a>();</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> & rhs);</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a>();</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> & operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> & rhs);</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> </div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordtype">bool</span> buildRoundPackages(RoundPackages & pkg, <a class="code" href="classOpenMS_1_1String.html">String</a> & error_msg);</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="keywordtype">bool</span> isUpstreamFinished() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> </div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="keyword">virtual</span> QRectF boundingRect() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keyword">virtual</span> QPainterPath shape() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> paint(QPainter * painter, <span class="keyword">const</span> QStyleOptionGraphicsItem * option, <a class="code" href="classQWidget.html">QWidget</a> * widget) = 0;</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  ConstEdgeIterator outEdgesBegin() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  ConstEdgeIterator outEdgesEnd() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  ConstEdgeIterator inEdgesBegin() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  ConstEdgeIterator inEdgesEnd() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> incomingEdgesCount();</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> outgoingEdgesCount();</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keywordtype">void</span> addInEdge(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * edge);</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordtype">void</span> addOutEdge(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * edge);</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordtype">void</span> removeInEdge(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * edge);</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <span class="keywordtype">void</span> removeOutEdge(<a class="code" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a> * edge);</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  DFS_COLOR getDFSColor();</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordtype">void</span> setDFSColor(DFS_COLOR color);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * getDFSParent();</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keywordtype">void</span> setDFSParent(<a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * parent);</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82d">TOPPASVertex::SUBSTREESTATUS</a> getSubtreeStatus() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keywordtype">bool</span> isTopoSortMarked();</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="keywordtype">void</span> setTopoSortMarked(<span class="keywordtype">bool</span> b);</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  <a class="code" href="classunsigned_01int.html">UInt</a> getTopoNr();</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setTopoNr(<a class="code" href="classunsigned_01int.html">UInt</a> nr);</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> reset(<span class="keywordtype">bool</span> reset_all_files = <span class="keyword">false</span>);</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> markUnreachable();</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <span class="keywordtype">bool</span> isReachable();</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordtype">bool</span> isFinished() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> run();</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> invertRecylingMode();</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keywordtype">bool</span> isRecyclingEnabled() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordtype">void</span> setRecycling(<span class="keyword">const</span> <span class="keywordtype">bool</span> is_enabled);</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="comment">// get the name of the vertex (to be overridden by derived classes)</span></div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1String.html">String</a> getName() <span class="keyword">const</span> = 0;</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  QStringList getFileNames(<span class="keywordtype">int</span> param_index, <span class="keywordtype">int</span> <a class="code" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">round</a>) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  QStringList getFileNames() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span> </div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="comment">// get the output structure directly</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keyword">const</span> RoundPackages & getOutputFiles() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span> </div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span> </div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordtype">bool</span> allInputsReady();</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span> </div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> <span class="keyword">public</span> slots:</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span> </div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> inEdgeHasChanged();</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> outEdgeHasChanged();</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span> </div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span> signals:</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span> </div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  <span class="keywordtype">void</span> clicked();</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="keywordtype">void</span> released();</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordtype">void</span> hoveringEdgePosChanged(<span class="keyword">const</span> QPointF & new_pos);</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="keywordtype">void</span> newHoveringEdge(<span class="keyword">const</span> QPointF & pos);</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keywordtype">void</span> finishHoveringEdge();</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keywordtype">void</span> somethingHasChanged();</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordtype">void</span> itemDragged(qreal dx, qreal dy);</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keywordtype">void</span> parameterChanged(<span class="keyword">const</span> <span class="keywordtype">bool</span> invalidates_running_pipeline);</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span> </div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span> </div>
<div class="line"><a name="l00283"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#adb973df3e120412bd7df926fc1ed164a"> 283</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a8068b13ebc425362af36a54b7add2dbd">EdgeContainer</a> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#adb973df3e120412bd7df926fc1ed164a">in_edges_</a>;</div>
<div class="line"><a name="l00285"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a4dc4eddbe43591a80544697916ec46a9"> 285</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a8068b13ebc425362af36a54b7add2dbd">EdgeContainer</a> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a4dc4eddbe43591a80544697916ec46a9">out_edges_</a>;</div>
<div class="line"><a name="l00287"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a3a7bb144bd501b3754e9ac94ce0ad272"> 287</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a3a7bb144bd501b3754e9ac94ce0ad272">edge_being_created_</a>;</div>
<div class="line"><a name="l00289"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a67d75c367bab70cdb7c841f48ddd640f"> 289</a></span>  QColor <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a67d75c367bab70cdb7c841f48ddd640f">pen_color_</a>;</div>
<div class="line"><a name="l00291"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a8403eaf9ff3f6d7d5adaf309855edbaf"> 291</a></span>  QColor <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a8403eaf9ff3f6d7d5adaf309855edbaf">brush_color_</a>;</div>
<div class="line"><a name="l00293"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a8816d104c6964574da31520fb7e51277"> 293</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56c">DFS_COLOR</a> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a8816d104c6964574da31520fb7e51277">dfs_color_</a>;</div>
<div class="line"><a name="l00295"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a09658cb36a3f5aed4e217105e9d75d90"> 295</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a> * <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a09658cb36a3f5aed4e217105e9d75d90">dfs_parent_</a>;</div>
<div class="line"><a name="l00297"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#acfeb5b602cf2510821173884bd95b9b1"> 297</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#acfeb5b602cf2510821173884bd95b9b1">topo_sort_marked_</a>;</div>
<div class="line"><a name="l00299"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#ae9caa987527ca966fde4c3b2dd10c0ac"> 299</a></span>  <a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#ae9caa987527ca966fde4c3b2dd10c0ac">topo_nr_</a>;</div>
<div class="line"><a name="l00301"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a356a3a444e4cb90d0c3852c82fa334c0"> 301</a></span>  <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4">RoundPackages</a> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a356a3a444e4cb90d0c3852c82fa334c0">output_files_</a>;</div>
<div class="line"><a name="l00303"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a32977440cc590fd8f6815392ac93ef68"> 303</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a32977440cc590fd8f6815392ac93ef68">round_total_</a>;</div>
<div class="line"><a name="l00305"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a5ef4802a55dfe5d9b61e9510b32f79d6"> 305</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a5ef4802a55dfe5d9b61e9510b32f79d6">round_counter_</a>;</div>
<div class="line"><a name="l00307"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a9189d6cfedf2ace6f5f6aa152ba38f83"> 307</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a9189d6cfedf2ace6f5f6aa152ba38f83">finished_</a>;</div>
<div class="line"><a name="l00309"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#ac4dc8f3cd84dada9ba185025e46079f1"> 309</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#ac4dc8f3cd84dada9ba185025e46079f1">reachable_</a>;</div>
<div class="line"><a name="l00311"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#aed8c816b3f13d1faa226e55dc283a3fb"> 311</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#aed8c816b3f13d1faa226e55dc283a3fb">allow_output_recycling_</a>;</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span> </div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span> </div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> <span class="preprocessor">#ifdef TOPPAS_DEBUG</span></div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span> <span class="preprocessor"></span> <span class="comment">// Indentation level for nicer debug output</span></div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keyword">static</span> <span class="keywordtype">int</span> global_debug_indent_;</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> </div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordtype">void</span> mouseReleaseEvent(QGraphicsSceneMouseEvent * e);</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <span class="keywordtype">void</span> mousePressEvent(QGraphicsSceneMouseEvent * e);</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="keywordtype">void</span> mouseDoubleClickEvent(QGraphicsSceneMouseEvent * e);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="keywordtype">void</span> mouseMoveEvent(QGraphicsSceneMouseEvent * e);</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordtype">void</span> contextMenuEvent(QGraphicsSceneContextMenuEvent * event);</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> </div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> moveNewEdgeTo_(<span class="keyword">const</span> QPointF & pos);</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <a class="code" href="classOpenMS_1_1String.html">String</a> get3CharsNumber_(<a class="code" href="classunsigned_01int.html">UInt</a> number) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span> </div>
<div class="line"><a name="l00334"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPASVertex.html#a0e45831d29d5ebddc7b240d02de4388c"> 334</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPASVertex.html#a0e45831d29d5ebddc7b240d02de4388c">debugOut_</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> #ifdef TOPPAS_DEBUG</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  message</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span> #endif</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  )<span class="keyword"> const</span></div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> <span class="preprocessor">#ifdef TOPPAS_DEBUG</span></div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> <span class="preprocessor"></span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < global_debug_indent_; ++i)</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  {</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  std::cout << <span class="stringliteral">" "</span>;</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  }</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  std::cout << <span class="stringliteral">"["</span> << topo_nr_ << <span class="stringliteral">"] "</span> << message << std::endl;</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> <span class="preprocessor"></span> }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  };</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> }</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span> </div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> <span class="preprocessor">#endif</span></div>
<div class="ttc" id="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage_html_ad80d70b40e4f86a076de6804b57dcb3b"><div class="ttname"><a href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#ad80d70b40e4f86a076de6804b57dcb3b">OpenMS::TOPPASVertex::VertexRoundPackage::edge</a></div><div class="ttdeci">TOPPASEdge * edge</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:123</div></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a3a7bb144bd501b3754e9ac94ce0ad272"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a3a7bb144bd501b3754e9ac94ce0ad272">OpenMS::TOPPASVertex::edge_being_created_</a></div><div class="ttdeci">bool edge_being_created_</div><div class="ttdoc">Indicates whether a new out edge is currently being created. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:287</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a67d75c367bab70cdb7c841f48ddd640f"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a67d75c367bab70cdb7c841f48ddd640f">OpenMS::TOPPASVertex::pen_color_</a></div><div class="ttdeci">QColor pen_color_</div><div class="ttdoc">The color of the pen. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:289</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_acaf8b27b0ca96d83b07e26a4d20cd56c"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56c">OpenMS::TOPPASVertex::DFS_COLOR</a></div><div class="ttdeci">DFS_COLOR</div><div class="ttdoc">The color of a vertex during depth-first search. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:138</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a968be1628053bd7c083e363882af3971"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a968be1628053bd7c083e363882af3971">OpenMS::TOPPASVertex::RoundPackageIt</a></div><div class="ttdeci">RoundPackage::iterator RoundPackageIt</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:132</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_af3e4784ee641defd5b89fb1b51065d5a"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#af3e4784ee641defd5b89fb1b51065d5a">OpenMS::TOPPASVertex::RoundPackageConstIt</a></div><div class="ttdeci">RoundPackage::const_iterator RoundPackageConstIt</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:131</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a9189d6cfedf2ace6f5f6aa152ba38f83"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a9189d6cfedf2ace6f5f6aa152ba38f83">OpenMS::TOPPASVertex::finished_</a></div><div class="ttdeci">bool finished_</div><div class="ttdoc">Stores whether this node has already been processed during the current pipeline execution. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:307</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a702c2806c07f38b8416b031617dbc82dad26a5b1c2e27d16a8a780e89a5ddc77c"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82dad26a5b1c2e27d16a8a780e89a5ddc77c">OpenMS::TOPPASVertex::TV_UNFINISHED</a></div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:149</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html">OpenMS::TOPPASVertex</a></div><div class="ttdoc">The base class of the different vertex classes. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:98</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a421aaf9392b96c06e334c6a148a04e93"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a421aaf9392b96c06e334c6a148a04e93">OpenMS::TOPPASVertex::RoundPackage</a></div><div class="ttdeci">std::map< Int, VertexRoundPackage > RoundPackage</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:130</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage_html"><div class="ttname"><a href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html">OpenMS::TOPPASVertex::VertexRoundPackage</a></div><div class="ttdoc">Info for one edge and round, to be passed to next node. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:114</div></div>
<div class="ttc" id="classQGraphicsItem_html"><div class="ttname"><a href="classQGraphicsItem.html">QGraphicsItem</a></div></div>
<div class="ttc" id="classQWidget_html"><div class="ttname"><a href="classQWidget.html">QWidget</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_aed8c816b3f13d1faa226e55dc283a3fb"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#aed8c816b3f13d1faa226e55dc283a3fb">OpenMS::TOPPASVertex::allow_output_recycling_</a></div><div class="ttdeci">bool allow_output_recycling_</div><div class="ttdoc">shall subsequent tools be allowed to recycle the output of this node to match the number of rounds im...</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:311</div></div>
<div class="ttc" id="Map_8h_html"><div class="ttname"><a href="Map_8h.html">Map.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a09658cb36a3f5aed4e217105e9d75d90"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a09658cb36a3f5aed4e217105e9d75d90">OpenMS::TOPPASVertex::dfs_parent_</a></div><div class="ttdeci">TOPPASVertex * dfs_parent_</div><div class="ttdoc">The DFS parent of this node. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:295</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a8816d104c6964574da31520fb7e51277"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a8816d104c6964574da31520fb7e51277">OpenMS::TOPPASVertex::dfs_color_</a></div><div class="ttdeci">DFS_COLOR dfs_color_</div><div class="ttdoc">The DFS color of this node. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:293</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage_html_a2f54c974d32ec466476023406adb3dc7"><div class="ttname"><a href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a2f54c974d32ec466476023406adb3dc7">OpenMS::TOPPASVertex::VertexRoundPackage::filenames</a></div><div class="ttdeci">QStringList filenames</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:122</div></div>
<div class="ttc" id="classQObject_html"><div class="ttname"><a href="classQObject.html">QObject</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASEdge_html"><div class="ttname"><a href="classOpenMS_1_1TOPPASEdge.html">OpenMS::TOPPASEdge</a></div><div class="ttdoc">An edge representing a data flow in TOPPAS. </div><div class="ttdef"><b>Definition:</b> TOPPASEdge.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a702c2806c07f38b8416b031617dbc82d"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82d">OpenMS::TOPPASVertex::SUBSTREESTATUS</a></div><div class="ttdeci">SUBSTREESTATUS</div><div class="ttdoc">The color of a vertex during depth-first search. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:146</div></div>
<div class="ttc" id="group__MathFunctionsMisc_html_ga3994eea4342458b8d83ae1984b72d6ac"><div class="ttname"><a href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">OpenMS::Math::round</a></div><div class="ttdeci">T round(T x)</div><div class="ttdoc">Rounds the value. </div><div class="ttdef"><b>Definition:</b> MathFunctions.h:135</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_ad941ea70c82eb56530cc0906d089b2bc"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#ad941ea70c82eb56530cc0906d089b2bc">OpenMS::TOPPASVertex::EdgeIterator</a></div><div class="ttdeci">EdgeContainer::iterator EdgeIterator</div><div class="ttdoc">A mutable iterator for in/out edges. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:110</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a4dc4eddbe43591a80544697916ec46a9"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a4dc4eddbe43591a80544697916ec46a9">OpenMS::TOPPASVertex::out_edges_</a></div><div class="ttdeci">EdgeContainer out_edges_</div><div class="ttdoc">The list of outgoing edges. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:285</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a32977440cc590fd8f6815392ac93ef68"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a32977440cc590fd8f6815392ac93ef68">OpenMS::TOPPASVertex::round_total_</a></div><div class="ttdeci">int round_total_</div><div class="ttdoc">number of rounds this node will do (&#39;Merge All&#39; nodes will pass everything, thus do only one round) ...</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:303</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_acaf8b27b0ca96d83b07e26a4d20cd56cabf5ca9664a4b4725221e62c119d93fbd"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56cabf5ca9664a4b4725221e62c119d93fbd">OpenMS::TOPPASVertex::DFS_WHITE</a></div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a0e45831d29d5ebddc7b240d02de4388c"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a0e45831d29d5ebddc7b240d02de4388c">OpenMS::TOPPASVertex::debugOut_</a></div><div class="ttdeci">void debugOut_(const String &) const </div><div class="ttdoc">Displays the debug output message, if TOPPAS_DEBUG is defined. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:334</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a702c2806c07f38b8416b031617dbc82da585f9f45bd1c9ee925bb2605e623ff74"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a702c2806c07f38b8416b031617dbc82da585f9f45bd1c9ee925bb2605e623ff74">OpenMS::TOPPASVertex::TV_ALLFINISHED</a></div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:148</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_ac4dc8f3cd84dada9ba185025e46079f1"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#ac4dc8f3cd84dada9ba185025e46079f1">OpenMS::TOPPASVertex::reachable_</a></div><div class="ttdeci">bool reachable_</div><div class="ttdoc">Indicates whether this node is reachable (i.e. there is an input node somewhere further upstream) ...</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:309</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a6105e5f2708c2f3e7015b883e61728f4"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a6105e5f2708c2f3e7015b883e61728f4">OpenMS::TOPPASVertex::RoundPackages</a></div><div class="ttdeci">std::vector< RoundPackage > RoundPackages</div><div class="ttdoc">all information a node needs to process all rounds </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:135</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_adb973df3e120412bd7df926fc1ed164a"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#adb973df3e120412bd7df926fc1ed164a">OpenMS::TOPPASVertex::in_edges_</a></div><div class="ttdeci">EdgeContainer in_edges_</div><div class="ttdoc">The list of incoming edges. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:283</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a356a3a444e4cb90d0c3852c82fa334c0"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a356a3a444e4cb90d0c3852c82fa334c0">OpenMS::TOPPASVertex::output_files_</a></div><div class="ttdeci">RoundPackages output_files_</div><div class="ttdoc">Stores the current output file names for each output parameter. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:301</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a8068b13ebc425362af36a54b7add2dbd"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a8068b13ebc425362af36a54b7add2dbd">OpenMS::TOPPASVertex::EdgeContainer</a></div><div class="ttdeci">QList< TOPPASEdge * > EdgeContainer</div><div class="ttdoc">The container for in/out edges. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_acaf8b27b0ca96d83b07e26a4d20cd56ca6ab3395a32045dea10946797fc05df64"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#acaf8b27b0ca96d83b07e26a4d20cd56ca6ab3395a32045dea10946797fc05df64">OpenMS::TOPPASVertex::DFS_GRAY</a></div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:141</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage_html_a8e7055e841038469f160ac6f5b9b6e78"><div class="ttname"><a href="structOpenMS_1_1TOPPASVertex_1_1VertexRoundPackage.html#a8e7055e841038469f160ac6f5b9b6e78">OpenMS::TOPPASVertex::VertexRoundPackage::VertexRoundPackage</a></div><div class="ttdeci">VertexRoundPackage()</div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a8403eaf9ff3f6d7d5adaf309855edbaf"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a8403eaf9ff3f6d7d5adaf309855edbaf">OpenMS::TOPPASVertex::brush_color_</a></div><div class="ttdeci">QColor brush_color_</div><div class="ttdoc">The color of the brush. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:291</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a83caa7d22f7c981fe8072373b7a62d07"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a83caa7d22f7c981fe8072373b7a62d07">OpenMS::TOPPASVertex::ConstEdgeIterator</a></div><div class="ttdeci">EdgeContainer::const_iterator ConstEdgeIterator</div><div class="ttdoc">A const iterator for in/out edges. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:112</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_acfeb5b602cf2510821173884bd95b9b1"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#acfeb5b602cf2510821173884bd95b9b1">OpenMS::TOPPASVertex::topo_sort_marked_</a></div><div class="ttdeci">bool topo_sort_marked_</div><div class="ttdoc">&quot;marked&quot; flag for topological sort </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:297</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_ae9caa987527ca966fde4c3b2dd10c0ac"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#ae9caa987527ca966fde4c3b2dd10c0ac">OpenMS::TOPPASVertex::topo_nr_</a></div><div class="ttdeci">UInt topo_nr_</div><div class="ttdoc">The number in a topological sort of the entire graph. </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:299</div></div>
<div class="ttc" id="String_8h_html"><div class="ttname"><a href="String_8h.html">String.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPASVertex_html_a5ef4802a55dfe5d9b61e9510b32f79d6"><div class="ttname"><a href="classOpenMS_1_1TOPPASVertex.html#a5ef4802a55dfe5d9b61e9510b32f79d6">OpenMS::TOPPASVertex::round_counter_</a></div><div class="ttdeci">int round_counter_</div><div class="ttdoc">currently finished number of rounds (TODO: do we need that?) </div><div class="ttdef"><b>Definition:</b> TOPPASVertex.h:305</div></div>
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