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<a href="TOPPViewBase_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Timo Sachsenberg$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Marc Sturm, Timo Sachsenberg $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_VISUAL_APPLICATIONS_TOPPVIEWBASE_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_APPLICATIONS_TOPPVIEWBASE_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment">//OpenMS</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="StandardTypes_8h.html">OpenMS/KERNEL/StandardTypes.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="DefaultParamHandler_8h.html">OpenMS/DATASTRUCTURES/DefaultParamHandler.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="SpectrumCanvas_8h.html">OpenMS/VISUAL/SpectrumCanvas.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="SpectrumWidget_8h.html">OpenMS/VISUAL/SpectrumWidget.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="FileWatcher_8h.html">OpenMS/SYSTEM/FileWatcher.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="SpectraViewWidget_8h.html">OpenMS/VISUAL/SpectraViewWidget.h</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <<a class="code" href="SpectraIdentificationViewWidget_8h.html">OpenMS/VISUAL/SpectraIdentificationViewWidget.h</a>></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <<a class="code" href="TOPPViewBehaviorInterface_8h.html">OpenMS/VISUAL/TOPPViewBehaviorInterface.h</a>></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <<a class="code" href="TOPPViewSpectraViewBehavior_8h.html">OpenMS/VISUAL/TOPPViewSpectraViewBehavior.h</a>></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#include <<a class="code" href="TOPPViewIdentificationViewBehavior_8h.html">OpenMS/VISUAL/TOPPViewIdentificationViewBehavior.h</a>></span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="comment">//STL</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor">#include <map></span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="comment">//QT</span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="preprocessor">#include <QtGui/QMainWindow></span></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="preprocessor">#include <QtGui/QButtonGroup></span></div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="preprocessor">#include <QtGui/QActionGroup></span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor">#include <QtCore/QStringList></span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="preprocessor">#include <QtCore/QProcess></span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="keyword">class </span>QAction;</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="keyword">class </span>QComboBox;</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">class </span>QLabel;</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="keyword">class </span><a class="code" href="classQLineEdit.html">QLineEdit</a>;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="keyword">class </span><a class="code" href="classQListWidget.html">QListWidget</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> <span class="keyword">class </span>QListWidgetItem;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="keyword">class </span><a class="code" href="classQTreeWidget.html">QTreeWidget</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="keyword">class </span>QTreeWidgetItem;</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="keyword">class </span>QDockWidget;</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="keyword">class </span>QToolButton;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="keyword">class </span>QCloseEvent;</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="keyword">class </span><a class="code" href="classQTextEdit.html">QTextEdit</a>;</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="keyword">class </span>QCheckBox;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="keyword">class </span>QSplashScreen;</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">class </span>QToolButton;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="keyword">class </span><a class="code" href="classQWorkspace.html">QWorkspace</a>;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> {</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">class </span>EnhancedWorkspace;</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="keyword">class </span>EnhancedTabBar;</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="keyword">class </span>Spectrum1DWidget;</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keyword">class </span>Spectrum2DWidget;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">class </span>Spectrum3DWidget;</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">class </span>ToolsDialog;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <span class="keyword">class </span>MultiGradientSelector;</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keyword">class </span>DBConnection;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="keyword">class </span>FileWatcher;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html"> 104</a></span>  <span class="keyword">class </span>OPENMS_GUI_DLLAPI <a class="code" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a> :</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keyword">public</span> <a class="code" href="classQMainWindow.html">QMainWindow</a>,</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  {</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  Q_OBJECT</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aac7cb20f300c841a51e6897976a619b2"> 110</a></span>  <span class="keyword">friend</span> <span class="keyword">class </span>TestTOPPView;</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> </div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="comment">//Feature map type</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aa7a5e927821becd67a3545a8a5ad1f6f"> 116</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">LayerData::FeatureMapType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aa7a5e927821becd67a3545a8a5ad1f6f">FeatureMapType</a>;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="comment">//Feature map managed type</span></div>
<div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a61f4e5d1d9e5406392401123630a54a1"> 118</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">LayerData::FeatureMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a61f4e5d1d9e5406392401123630a54a1">FeatureMapSharedPtrType</a>;</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="comment">//Consensus feature map type</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a7131cd010b1a62bb91f4906ed9d8d070"> 121</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">LayerData::ConsensusMapType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a7131cd010b1a62bb91f4906ed9d8d070">ConsensusMapType</a>;</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="comment">//Consensus map managed type</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a58909d1bd31f10639864202b79f6492f"> 123</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">LayerData::ConsensusMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a58909d1bd31f10639864202b79f6492f">ConsensusMapSharedPtrType</a>;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> </div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="comment">//Peak map type</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a0da7b99d2cbe1849595d13333c41132d"> 126</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">LayerData::ExperimentType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a0da7b99d2cbe1849595d13333c41132d">ExperimentType</a>;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="comment">//Main managed data type (experiment)</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a1ae7f709c195f177bf6e0fc9755a81ca"> 128</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">LayerData::ExperimentSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a1ae7f709c195f177bf6e0fc9755a81ca">ExperimentSharedPtrType</a>;</div>
<div class="line"><a name="l00130"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a5b2d7132d44f448e9ebdeca542d01827"> 130</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">ExperimentType::SpectrumType</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a5b2d7132d44f448e9ebdeca542d01827">SpectrumType</a>;</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a>(<a class="code" href="classQWidget.html">QWidget</a>* parent = 0);</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  ~<a class="code" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a>();</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordtype">void</span> addDataFile(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& filename, <span class="keywordtype">bool</span> show_options, <span class="keywordtype">bool</span> add_to_recent, <a class="code" href="classOpenMS_1_1String.html">String</a> caption = <span class="stringliteral">""</span>, <a class="code" href="classunsigned_01int.html">UInt</a> window_id = 0, <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum_id = 0);</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <span class="keywordtype">void</span> addDataDB(<a class="code" href="classunsigned_01int.html">UInt</a> db_id, <span class="keywordtype">bool</span> show_options, <a class="code" href="classOpenMS_1_1String.html">String</a> caption = <span class="stringliteral">""</span>, <a class="code" href="classunsigned_01int.html">UInt</a> window_id = 0);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordtype">void</span> addData(<a class="code" href="classOpenMS_1_1TOPPViewBase.html#a61f4e5d1d9e5406392401123630a54a1">FeatureMapSharedPtrType</a> feature_map, <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a58909d1bd31f10639864202b79f6492f">ConsensusMapSharedPtrType</a> consensus_map, std::vector<PeptideIdentification>& peptides, <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a1ae7f709c195f177bf6e0fc9755a81ca">ExperimentSharedPtrType</a> peak_map, <a class="code" href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6">LayerData::DataType</a> data_type, <span class="keywordtype">bool</span> show_as_1d, <span class="keywordtype">bool</span> show_options, <span class="keywordtype">bool</span> as_new_window = <span class="keyword">true</span>, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& filename = <span class="stringliteral">""</span>, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& caption = <span class="stringliteral">""</span>, <a class="code" href="classunsigned_01int.html">UInt</a> window_id = 0, <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum_id = 0);</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordtype">void</span> loadFiles(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1StringList.html">StringList</a>& list, QSplashScreen* splash_screen);</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span> </div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="keywordtype">void</span> loadPreferences(<a class="code" href="classOpenMS_1_1String.html">String</a> filename = <span class="stringliteral">""</span>);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> </div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordtype">void</span> savePreferences();</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> </div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <a class="code" href="classOpenMS_1_1Param.html">Param</a> getSpectrumParameters(<a class="code" href="classunsigned_01int.html">UInt</a> dim);</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> </div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1LayerData.html">LayerData</a>* getCurrentLayer() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="comment">//@name Accessors for the main gui components.</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="comment">//@brief The top level enhanced workspace and the EnhancedTabWidgets resing in the EnhancedTabBar.</span></div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> <span class="comment"></span> <a class="code" href="classOpenMS_1_1EnhancedWorkspace.html">EnhancedWorkspace</a>* getWorkspace() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <a class="code" href="classOpenMS_1_1SpectrumWidget.html">SpectrumWidget</a>* getActiveSpectrumWidget() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> </div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <a class="code" href="classOpenMS_1_1Spectrum1DWidget.html">Spectrum1DWidget</a>* getActive1DWidget() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <a class="code" href="classOpenMS_1_1Spectrum2DWidget.html">Spectrum2DWidget</a>* getActive2DWidget() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> </div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <a class="code" href="classOpenMS_1_1Spectrum3DWidget.html">Spectrum3DWidget</a>* getActive3DWidget() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <a class="code" href="classOpenMS_1_1SpectrumCanvas.html">SpectrumCanvas</a>* getActiveCanvas() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span> </div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <a class="code" href="classOpenMS_1_1SpectraIdentificationViewWidget.html">SpectraIdentificationViewWidget</a>* getSpectraIdentificationViewWidget();</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordtype">void</span> showSpectrumWidgetInWindow(<a class="code" href="classOpenMS_1_1SpectrumWidget.html">SpectrumWidget</a>* sw, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& caption);</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> <span class="keyword">public</span> slots:</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordtype">void</span> updateCurrentPath();</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="keywordtype">void</span> showURL();</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="keywordtype">void</span> openFileDialog();</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordtype">void</span> openExampleDialog();</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="keywordtype">void</span> openDatabaseDialog();</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  <span class="keywordtype">void</span> showGoToDialog();</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keywordtype">void</span> preferencesDialog();</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="keywordtype">void</span> layerStatistics();</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordtype">void</span> editMetadata();</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordtype">void</span> layerActivated();</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordtype">void</span> layerZoomChanged();</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="keywordtype">void</span> linkZoom();</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keywordtype">void</span> layerDeactivated();</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordtype">void</span> activate1DSpectrum(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keywordtype">void</span> activate1DSpectrum(std::vector<<span class="keywordtype">int</span>, std::allocator<int> > indices);</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordtype">void</span> deactivate1DSpectrum(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keywordtype">void</span> closeFile();</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="keywordtype">void</span> updateToolBar();</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="keywordtype">void</span> updateLayerBar();</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordtype">void</span> updateViewBar();</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordtype">void</span> viewChanged(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordtype">void</span> updateFilterBar();</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keywordtype">void</span> updateMenu();</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keywordtype">void</span> updateTabBar(<a class="code" href="classQWidget.html">QWidget</a>* w);</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keywordtype">void</span> tileVertical();</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keywordtype">void</span> tileHorizontal();</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <span class="keywordtype">void</span> showStatusMessage(std::string msg, <a class="code" href="classunsigned_01int.html">OpenMS::UInt</a> time);</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <span class="keywordtype">void</span> showCursorStatus(<span class="keywordtype">double</span> mz, <span class="keywordtype">double</span> rt);</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="keywordtype">void</span> showCursorStatusInvert(<span class="keywordtype">double</span> mz, <span class="keywordtype">double</span> rt);</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <span class="keywordtype">void</span> showTOPPDialog();</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="keywordtype">void</span> annotateWithID();</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordtype">void</span> showSpectrumGenerationDialog();</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <span class="keywordtype">void</span> showSpectrumAlignmentDialog();</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="keywordtype">void</span> showSpectrumAs1D(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  <span class="keywordtype">void</span> showSpectrumAs1D(std::vector<<span class="keywordtype">int</span>, std::allocator<int> > indices);</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="keywordtype">void</span> showCurrentPeaksAs2D();</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordtype">void</span> showCurrentPeaksAs3D();</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keywordtype">void</span> showAboutDialog();</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  <span class="keywordtype">void</span> saveLayerAll();</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="keywordtype">void</span> saveLayerVisible();</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="keywordtype">void</span> toggleGridLines();</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordtype">void</span> toggleAxisLegends();</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="keywordtype">void</span> showPreferences();</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="keywordtype">void</span> metadataDatabaseDialog();</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <span class="keywordtype">void</span> metadataFileDialog();</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span> </div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="keywordtype">void</span> setDrawMode1D(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordtype">void</span> setIntensityMode(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="keywordtype">void</span> changeLayerFlag(<span class="keywordtype">bool</span>);</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keywordtype">void</span> changeLabel(QAction*);</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="keywordtype">void</span> changeUnassigned(QAction*);</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="keywordtype">void</span> resetZoom();</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keywordtype">void</span> toggleProjections();</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <span class="keywordtype">void</span> loadFile(QString);</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span> </div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <span class="keyword">protected</span> slots:</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <span class="keywordtype">void</span> layerSelectionChange(<span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  <span class="keywordtype">void</span> layerFilterVisibilityChange(<span class="keywordtype">bool</span>);</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keywordtype">void</span> layerContextMenu(<span class="keyword">const</span> QPoint& pos);</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <span class="keywordtype">void</span> logContextMenu(<span class="keyword">const</span> QPoint& pos);</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="keywordtype">void</span> layerVisibilityChange(QListWidgetItem* item);</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <span class="keywordtype">void</span> filterContextMenu(<span class="keyword">const</span> QPoint& pos);</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <span class="keywordtype">void</span> filterEdit(QListWidgetItem* item);</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  <span class="keywordtype">void</span> layerEdit(QListWidgetItem* <span class="comment">/*item*/</span>);</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span> </div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <span class="keywordtype">void</span> finishTOPPToolExecution(<span class="keywordtype">int</span> exitCode, QProcess::ExitStatus exitStatus);</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keywordtype">void</span> abortTOPPTool();</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <span class="keywordtype">void</span> rerunTOPPTool();</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordtype">void</span> showSpectrumBrowser();</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keywordtype">void</span> showSpectrumMetaData(<span class="keywordtype">int</span> spectrum_index);</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> </div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keywordtype">void</span> closeByTab(<span class="keywordtype">int</span> <span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <span class="keywordtype">void</span> enhancedWorkspaceWindowChanged(<span class="keywordtype">int</span> <span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  <span class="keywordtype">void</span> openRecentFile();</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="keywordtype">void</span> copyLayer(<span class="keyword">const</span> QMimeData* data, <a class="code" href="classQWidget.html">QWidget</a>* source, <span class="keywordtype">int</span> <span class="keywordtype">id</span> = -1);</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> </div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  <span class="keywordtype">void</span> updateProcessLog();</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="keywordtype">void</span> fileChanged_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>&);</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordtype">void</span> initializeDefaultParameters_();</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  std::set<String> getFilenamesOfOpenFiles_();</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span> </div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  <span class="keywordtype">void</span> connectToDB_(<a class="code" href="classOpenMS_1_1DBConnection.html">DBConnection</a>& db);</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  QStringList getFileList_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& path_overwrite = <span class="stringliteral">""</span>);</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <a class="code" href="classOpenMS_1_1EnhancedTabBarWidgetInterface.html">EnhancedTabBarWidgetInterface</a>* window_(<span class="keywordtype">int</span> <span class="keywordtype">id</span>) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span> </div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> </div>
<div class="line"><a name="l00409"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#af2c67af308d61d1f4e04f3959850d5ba"> 409</a></span>  QDockWidget* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#af2c67af308d61d1f4e04f3959850d5ba">layer_dock_widget_</a>;</div>
<div class="line"><a name="l00410"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a1677bf5b0d92653ce88e642a2347429c"> 410</a></span>  QDockWidget* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a1677bf5b0d92653ce88e642a2347429c">views_dockwidget_</a>;</div>
<div class="line"><a name="l00411"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a017dc3f5bc12b16c21dd71b48b47753d"> 411</a></span>  QDockWidget* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a017dc3f5bc12b16c21dd71b48b47753d">filter_dock_widget_</a>;</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> </div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span> </div>
<div class="line"><a name="l00416"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#af2a85a41b0a09a478227e0250b20bfad"> 416</a></span>  <a class="code" href="classOpenMS_1_1SpectraViewWidget.html">SpectraViewWidget</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#af2a85a41b0a09a478227e0250b20bfad">spectra_view_widget_</a>;</div>
<div class="line"><a name="l00417"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aae9f53bab05ca557c8912b904c75e511"> 417</a></span>  <a class="code" href="classOpenMS_1_1SpectraIdentificationViewWidget.html">SpectraIdentificationViewWidget</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aae9f53bab05ca557c8912b904c75e511">spectra_identification_view_widget_</a>;</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span> </div>
<div class="line"><a name="l00421"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ac66f8525af1184339d19d3de32486b0a"> 421</a></span>  <a class="code" href="classQListWidget.html">QListWidget</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ac66f8525af1184339d19d3de32486b0a">layer_manager_</a>;</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span> </div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span> </div>
<div class="line"><a name="l00425"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#abe623c532f0c5d26687fc212887cc69c"> 425</a></span>  <a class="code" href="classQListWidget.html">QListWidget</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#abe623c532f0c5d26687fc212887cc69c">filters_</a>;</div>
<div class="line"><a name="l00426"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a43f7661c6feb07a89f1e2046420f984d"> 426</a></span>  QCheckBox* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a43f7661c6feb07a89f1e2046420f984d">filters_check_box_</a>;</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span> </div>
<div class="line"><a name="l00430"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a7a216ea295885fbe63668eb9a1d3a60c"> 430</a></span>  <a class="code" href="classOpenMS_1_1FileWatcher.html">FileWatcher</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a7a216ea295885fbe63668eb9a1d3a60c">watcher_</a>;</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span> </div>
<div class="line"><a name="l00433"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aa1584dc2753f3cbd3cc0cc3617f6e1d8"> 433</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aa1584dc2753f3cbd3cc0cc3617f6e1d8">watcher_msgbox_</a>;</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span> </div>
<div class="line"><a name="l00436"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a5b000202562a833b20e15149a17ee459"> 436</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a5b000202562a833b20e15149a17ee459">zoom_together_</a>;</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span> </div>
<div class="line"><a name="l00438"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a366298b473e85487b29b8a5839b61d93"> 438</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a366298b473e85487b29b8a5839b61d93">linkZoom_action_</a>;</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> </div>
<div class="line"><a name="l00441"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a127d69d25a07771a5d75ad5fbfd9c4c8"> 441</a></span>  <a class="code" href="classQTextEdit.html">QTextEdit</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a127d69d25a07771a5d75ad5fbfd9c4c8">log_</a>;</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span> </div>
<div class="line"><a name="l00446"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ac95bf715314bd478482ad36021db3e7c"> 446</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ac95bf715314bd478482ad36021db3e7c">tool_bar_</a>;</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="comment">//common intensity modes</span></div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span> </div>
<div class="line"><a name="l00449"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a76a5712e890e5c24fb148a9a221b674e"> 449</a></span>  QButtonGroup* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a76a5712e890e5c24fb148a9a221b674e">intensity_button_group_</a>;</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <span class="comment">//1D specific stuff</span></div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span> </div>
<div class="line"><a name="l00452"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ae86d3bc3c8cb94c4680ab05015d97024"> 452</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ae86d3bc3c8cb94c4680ab05015d97024">tool_bar_1d_</a>;</div>
<div class="line"><a name="l00453"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a443f2a5ada23e63335f88194c06b46d2"> 453</a></span>  QButtonGroup* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a443f2a5ada23e63335f88194c06b46d2">draw_group_1d_</a>;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> </div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="comment">//2D specific stuff</span></div>
<div class="line"><a name="l00456"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a9c027e7a63023445f066e7e45c6a1f2e"> 456</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a9c027e7a63023445f066e7e45c6a1f2e">tool_bar_2d_peak_</a>;</div>
<div class="line"><a name="l00457"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a5d3461e2bb6b1e683ce33c65fde5ec2b"> 457</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a5d3461e2bb6b1e683ce33c65fde5ec2b">tool_bar_2d_feat_</a>;</div>
<div class="line"><a name="l00458"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#acca24850ed62bee2775989634297f356"> 458</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#acca24850ed62bee2775989634297f356">tool_bar_2d_cons_</a>;</div>
<div class="line"><a name="l00459"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aea31f700a839e0b9fcabbe4e17947c87"> 459</a></span>  QToolBar* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aea31f700a839e0b9fcabbe4e17947c87">tool_bar_2d_ident_</a>;</div>
<div class="line"><a name="l00460"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a708627433d665c8aeadf7d7cbcb98223"> 460</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a708627433d665c8aeadf7d7cbcb98223">dm_precursors_2d_</a>;</div>
<div class="line"><a name="l00461"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a85911b3f843b60895ee1f6b08ee493e6"> 461</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a85911b3f843b60895ee1f6b08ee493e6">dm_hull_2d_</a>;</div>
<div class="line"><a name="l00462"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a970069b88e7f72bc7a82753b11895834"> 462</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a970069b88e7f72bc7a82753b11895834">dm_hulls_2d_</a>;</div>
<div class="line"><a name="l00463"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a3f7689ee425242f14e0b94bd48008c9d"> 463</a></span>  QToolButton* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a3f7689ee425242f14e0b94bd48008c9d">dm_label_2d_</a>;</div>
<div class="line"><a name="l00464"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a6b7c69812e37a065cbb1a36f7679198f"> 464</a></span>  QActionGroup* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a6b7c69812e37a065cbb1a36f7679198f">group_label_2d_</a>;</div>
<div class="line"><a name="l00465"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aceb6f7383425404eb264912994d2845e"> 465</a></span>  QToolButton* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aceb6f7383425404eb264912994d2845e">dm_unassigned_2d_</a>;</div>
<div class="line"><a name="l00466"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a76aef0524145f15bd72818eeb466799d"> 466</a></span>  QActionGroup* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a76aef0524145f15bd72818eeb466799d">group_unassigned_2d_</a>;</div>
<div class="line"><a name="l00467"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a9e4df2d1af6490922eacf023a8c550dc"> 467</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a9e4df2d1af6490922eacf023a8c550dc">dm_elements_2d_</a>;</div>
<div class="line"><a name="l00468"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ab2df52d724fe0b69ff3e491f323d405c"> 468</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ab2df52d724fe0b69ff3e491f323d405c">projections_2d_</a>;</div>
<div class="line"><a name="l00469"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a8e7e4ba7ac10d568d727da112b75da0e"> 469</a></span>  QAction* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a8e7e4ba7ac10d568d727da112b75da0e">dm_ident_2d_</a>;</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> </div>
<div class="line"><a name="l00473"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a9adee9ecc0322b4d43cf56318c7cdf5b"> 473</a></span>  <a class="code" href="classOpenMS_1_1EnhancedWorkspace.html">EnhancedWorkspace</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a9adee9ecc0322b4d43cf56318c7cdf5b">ws_</a>;</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span> </div>
<div class="line"><a name="l00476"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a3164ba2ec5ebaa2b9743f6d2f37c09e6"> 476</a></span>  <a class="code" href="classOpenMS_1_1EnhancedTabBar.html">EnhancedTabBar</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a3164ba2ec5ebaa2b9743f6d2f37c09e6">tab_bar_</a>;</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span> </div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  QLabel* message_label_;</div>
<div class="line"><a name="l00484"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a3dcea6d5dabb846ad74ec9ade9e854ce"> 484</a></span>  QLabel* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a3dcea6d5dabb846ad74ec9ade9e854ce">mz_label_</a>;</div>
<div class="line"><a name="l00486"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ae56fd00bb242dcd41b6c096d2ab87a4b"> 486</a></span>  QLabel* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ae56fd00bb242dcd41b6c096d2ab87a4b">rt_label_</a>;</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span> </div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span> </div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  <span class="keywordtype">void</span> addRecentFile_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& filename);</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <span class="keywordtype">void</span> updateRecentMenu_();</div>
<div class="line"><a name="l00496"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a2d213378ad7f5fb2aa6e5c7e00c6542f"> 496</a></span>  QStringList <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a2d213378ad7f5fb2aa6e5c7e00c6542f">recent_files_</a>;</div>
<div class="line"><a name="l00498"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a28ea0ef456a6aed8205de4628b9e162d"> 498</a></span>  std::vector<QAction*> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a28ea0ef456a6aed8205de4628b9e162d">recent_actions_</a>;</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span> </div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span> </div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span> </div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <span class="keywordtype">void</span> runTOPPTool_();</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  <span class="keyword">struct</span></div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  {</div>
<div class="line"><a name="l00509"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ad754716e5ea05dfffa1e048774643960"> 509</a></span>  <a class="code" href="classOpenMS_1_1Param.html">Param</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ad754716e5ea05dfffa1e048774643960">param</a>;</div>
<div class="line"><a name="l00510"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ac34c7406fe753dcf78be26200866401a"> 510</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ac34c7406fe753dcf78be26200866401a">tool</a>;</div>
<div class="line"><a name="l00511"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a19a2651887fa4d874edfe6a94b54b2d5"> 511</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a19a2651887fa4d874edfe6a94b54b2d5">in</a>;</div>
<div class="line"><a name="l00512"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ab64766cccc4f8fdf5c87b8bcc9493c4a"> 512</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ab64766cccc4f8fdf5c87b8bcc9493c4a">out</a>;</div>
<div class="line"><a name="l00513"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a4a9fa0e228d53e5f8760fe602edfd53f"> 513</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a4a9fa0e228d53e5f8760fe602edfd53f">file_name</a>;</div>
<div class="line"><a name="l00514"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a70c00fd6b9375860941ae520c4380753"> 514</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a70c00fd6b9375860941ae520c4380753">layer_name</a>;</div>
<div class="line"><a name="l00515"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ad2277dd96639dd7d8fe4c75f4212c993"> 515</a></span>  <a class="code" href="classunsigned_01int.html">UInt</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ad2277dd96639dd7d8fe4c75f4212c993">window_id</a>;</div>
<div class="line"><a name="l00516"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a9376933d312fb4acd2b0d172c9f2b054"> 516</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a9376933d312fb4acd2b0d172c9f2b054">spectrum_id</a>;</div>
<div class="line"><a name="l00517"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a34f478480833f630c4670430e7e562e9"> 517</a></span>  <a class="code" href="classQProcess.html">QProcess</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a34f478480833f630c4670430e7e562e9">process</a>;</div>
<div class="line"><a name="l00518"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a7a3412234a88a268b5194714cc18fdda"> 518</a></span>  QTime <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a7a3412234a88a268b5194714cc18fdda">timer</a>;</div>
<div class="line"><a name="l00519"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#aa54a57ae048476d840caf6d4d2c47aa3"> 519</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#aa54a57ae048476d840caf6d4d2c47aa3">visible</a>;</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  } topp_;</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span> </div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  <span class="keywordtype">void</span> checkPreferences_();</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span> </div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <span class="keywordtype">void</span> closeEvent(QCloseEvent* event);</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span> </div>
<div class="line"><a name="l00531"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c"> 531</a></span>  <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">LogState</a></div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  {</div>
<div class="line"><a name="l00533"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1"> 533</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">LS_NOTICE</a>, </div>
<div class="line"><a name="l00534"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907"> 534</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907">LS_WARNING</a>, </div>
<div class="line"><a name="l00535"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf"> 535</a></span>  LS_ERROR </div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  };</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  <span class="keywordtype">void</span> showLogMessage_(LogState state, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& heading, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a>& body);</div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span> </div>
<div class="line"><a name="l00541"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ac3eb91f6aacdfb23d36ef8947037d718"> 541</a></span>  QMenu* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ac3eb91f6aacdfb23d36ef8947037d718">add_2d_context_</a>;</div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span> </div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span>  <span class="keywordtype">void</span> showTOPPDialog_(<span class="keywordtype">bool</span> visible);</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span> </div>
<div class="line"><a name="l00548"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#ad7e2bb620199713343abf73d1f56fb78"> 548</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#ad7e2bb620199713343abf73d1f56fb78">current_path_</a>;</div>
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span> </div>
<div class="line"><a name="l00551"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a196052a317551f9d31b3a1dff0dfaaa9"> 551</a></span>  QTabWidget* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a196052a317551f9d31b3a1dff0dfaaa9">views_tabwidget_</a>;</div>
<div class="line"><a name="l00553"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a051b6a92bf9309a79f3d061049129d0d"> 553</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewBehaviorInterface.html">TOPPViewBehaviorInterface</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a051b6a92bf9309a79f3d061049129d0d">view_behavior_</a>;</div>
<div class="line"><a name="l00555"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a8d5b24d6a54c9d9cf44eca207813c30b"> 555</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html">TOPPViewIdentificationViewBehavior</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a8d5b24d6a54c9d9cf44eca207813c30b">identificationview_behavior_</a>;</div>
<div class="line"><a name="l00557"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#abd2d3572dc5e36c44021d68796e50631"> 557</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html">TOPPViewSpectraViewBehavior</a>* <a class="code" href="classOpenMS_1_1TOPPViewBase.html#abd2d3572dc5e36c44021d68796e50631">spectraview_behavior_</a>;</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span> </div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  <span class="comment">// static helper functions</span></div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> containsMS1Scans(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">ExperimentType</a>& exp);</div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span> </div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  <span class="keywordtype">float</span> estimateNoiseFromRandomMS1Scans(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">ExperimentType</a>& exp, <a class="code" href="classunsigned_01int.html">UInt</a> n_scans = 10);</div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span> </div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  <span class="keyword">static</span> <a class="code" href="classunsigned_01int.html">UInt</a> countMS1Zeros(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">ExperimentType</a>& exp);</div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span> </div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> hasPeptideIdentifications(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">ExperimentType</a>& map);</div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span> </div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00575"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewBase.html#a623037882cb2679ffbe4bdc67da31ed6"> 575</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TOPPViewBase.html#a623037882cb2679ffbe4bdc67da31ed6">CAPTION_3D_SUFFIX_</a>;</div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  }; <span class="comment">//class</span></div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span> </div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span> } <span class="comment">//namespace</span></div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span> </div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span> <span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a70c00fd6b9375860941ae520c4380753"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a70c00fd6b9375860941ae520c4380753">OpenMS::TOPPViewBase::layer_name</a></div><div class="ttdeci">String layer_name</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:514</div></div>
<div class="ttc" id="TOPPViewIdentificationViewBehavior_8h_html"><div class="ttname"><a href="TOPPViewIdentificationViewBehavior_8h.html">TOPPViewIdentificationViewBehavior.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a58909d1bd31f10639864202b79f6492f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a58909d1bd31f10639864202b79f6492f">OpenMS::TOPPViewBase::ConsensusMapSharedPtrType</a></div><div class="ttdeci">LayerData::ConsensusMapSharedPtrType ConsensusMapSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:123</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ae56fd00bb242dcd41b6c096d2ab87a4b"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ae56fd00bb242dcd41b6c096d2ab87a4b">OpenMS::TOPPViewBase::rt_label_</a></div><div class="ttdeci">QLabel * rt_label_</div><div class="ttdoc">RT label for messages in the status bar. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:486</div></div>
<div class="ttc" id="TOPPViewBehaviorInterface_8h_html"><div class="ttname"><a href="TOPPViewBehaviorInterface_8h.html">TOPPViewBehaviorInterface.h</a></div></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a8d5b24d6a54c9d9cf44eca207813c30b"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a8d5b24d6a54c9d9cf44eca207813c30b">OpenMS::TOPPViewBase::identificationview_behavior_</a></div><div class="ttdeci">TOPPViewIdentificationViewBehavior * identificationview_behavior_</div><div class="ttdoc">TOPPView behavior for the identification view. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:555</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a017dc3f5bc12b16c21dd71b48b47753d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a017dc3f5bc12b16c21dd71b48b47753d">OpenMS::TOPPViewBase::filter_dock_widget_</a></div><div class="ttdeci">QDockWidget * filter_dock_widget_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:411</div></div>
<div class="ttc" id="StandardTypes_8h_html"><div class="ttname"><a href="StandardTypes_8h.html">StandardTypes.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a366298b473e85487b29b8a5839b61d93"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a366298b473e85487b29b8a5839b61d93">OpenMS::TOPPViewBase::linkZoom_action_</a></div><div class="ttdeci">QAction * linkZoom_action_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:438</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a443f2a5ada23e63335f88194c06b46d2"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a443f2a5ada23e63335f88194c06b46d2">OpenMS::TOPPViewBase::draw_group_1d_</a></div><div class="ttdeci">QButtonGroup * draw_group_1d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:453</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ae86d3bc3c8cb94c4680ab05015d97024"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ae86d3bc3c8cb94c4680ab05015d97024">OpenMS::TOPPViewBase::tool_bar_1d_</a></div><div class="ttdeci">QToolBar * tool_bar_1d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:452</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html">OpenMS::TOPPViewIdentificationViewBehavior</a></div><div class="ttdoc">Behavior of TOPPView in identification mode. </div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a28ea0ef456a6aed8205de4628b9e162d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a28ea0ef456a6aed8205de4628b9e162d">OpenMS::TOPPViewBase::recent_actions_</a></div><div class="ttdeci">std::vector< QAction * > recent_actions_</div><div class="ttdoc">list of the recently opened files actions (menu entries) </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:498</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="TOPPViewSpectraViewBehavior_8h_html"><div class="ttname"><a href="TOPPViewSpectraViewBehavior_8h.html">TOPPViewSpectraViewBehavior.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a970069b88e7f72bc7a82753b11895834"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a970069b88e7f72bc7a82753b11895834">OpenMS::TOPPViewBase::dm_hulls_2d_</a></div><div class="ttdeci">QAction * dm_hulls_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:462</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aea31f700a839e0b9fcabbe4e17947c87"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aea31f700a839e0b9fcabbe4e17947c87">OpenMS::TOPPViewBase::tool_bar_2d_ident_</a></div><div class="ttdeci">QToolBar * tool_bar_2d_ident_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:459</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a1ae7f709c195f177bf6e0fc9755a81ca"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a1ae7f709c195f177bf6e0fc9755a81ca">OpenMS::TOPPViewBase::ExperimentSharedPtrType</a></div><div class="ttdeci">LayerData::ExperimentSharedPtrType ExperimentSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:128</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aa54a57ae048476d840caf6d4d2c47aa3"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aa54a57ae048476d840caf6d4d2c47aa3">OpenMS::TOPPViewBase::visible</a></div><div class="ttdeci">bool visible</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:519</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a7131cd010b1a62bb91f4906ed9d8d070"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a7131cd010b1a62bb91f4906ed9d8d070">OpenMS::TOPPViewBase::ConsensusMapType</a></div><div class="ttdeci">LayerData::ConsensusMapType ConsensusMapType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:121</div></div>
<div class="ttc" id="classQTreeWidget_html"><div class="ttname"><a href="classQTreeWidget.html">QTreeWidget</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_abe623c532f0c5d26687fc212887cc69c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#abe623c532f0c5d26687fc212887cc69c">OpenMS::TOPPViewBase::filters_</a></div><div class="ttdeci">QListWidget * filters_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:425</div></div>
<div class="ttc" id="classOpenMS_1_1SpectraViewWidget_html"><div class="ttname"><a href="classOpenMS_1_1SpectraViewWidget.html">OpenMS::SpectraViewWidget</a></div><div class="ttdoc">Hierarchical visualization and selection of spectra. </div><div class="ttdef"><b>Definition:</b> SpectraViewWidget.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a051b6a92bf9309a79f3d061049129d0d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a051b6a92bf9309a79f3d061049129d0d">OpenMS::TOPPViewBase::view_behavior_</a></div><div class="ttdeci">TOPPViewBehaviorInterface * view_behavior_</div><div class="ttdoc">The current TOPPView view behavior. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:553</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html">OpenMS::TOPPViewBase</a></div><div class="ttdoc">Main window of TOPPView tool. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ac34c7406fe753dcf78be26200866401a"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ac34c7406fe753dcf78be26200866401a">OpenMS::TOPPViewBase::tool</a></div><div class="ttdeci">String tool</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:510</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a4a9fa0e228d53e5f8760fe602edfd53f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a4a9fa0e228d53e5f8760fe602edfd53f">OpenMS::TOPPViewBase::file_name</a></div><div class="ttdeci">String file_name</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:513</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a5d3461e2bb6b1e683ce33c65fde5ec2b"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a5d3461e2bb6b1e683ce33c65fde5ec2b">OpenMS::TOPPViewBase::tool_bar_2d_feat_</a></div><div class="ttdeci">QToolBar * tool_bar_2d_feat_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:457</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_ad8ed01ff3ff33333d8e19db4d2818bb6"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#ad8ed01ff3ff33333d8e19db4d2818bb6">OpenMS::LayerData::DataType</a></div><div class="ttdeci">DataType</div><div class="ttdoc">Dataset types. </div><div class="ttdef"><b>Definition:</b> LayerData.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap</a></div><div class="ttdoc">A container for features. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1Spectrum2DWidget_html"><div class="ttname"><a href="classOpenMS_1_1Spectrum2DWidget.html">OpenMS::Spectrum2DWidget</a></div><div class="ttdoc">Widget for 2D-visualization of peak map and feature map data. </div><div class="ttdef"><b>Definition:</b> Spectrum2DWidget.h:61</div></div>
<div class="ttc" id="classQWidget_html"><div class="ttname"><a href="classQWidget.html">QWidget</a></div></div>
<div class="ttc" id="classQListWidget_html"><div class="ttname"><a href="classQListWidget.html">QListWidget</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_acca24850ed62bee2775989634297f356"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#acca24850ed62bee2775989634297f356">OpenMS::TOPPViewBase::tool_bar_2d_cons_</a></div><div class="ttdeci">QToolBar * tool_bar_2d_cons_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:458</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumCanvas_html"><div class="ttname"><a href="classOpenMS_1_1SpectrumCanvas.html">OpenMS::SpectrumCanvas</a></div><div class="ttdoc">Base class for visualization canvas classes. </div><div class="ttdef"><b>Definition:</b> SpectrumCanvas.h:94</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a9c027e7a63023445f066e7e45c6a1f2e"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a9c027e7a63023445f066e7e45c6a1f2e">OpenMS::TOPPViewBase::tool_bar_2d_peak_</a></div><div class="ttdeci">QToolBar * tool_bar_2d_peak_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:456</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aae9f53bab05ca557c8912b904c75e511"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aae9f53bab05ca557c8912b904c75e511">OpenMS::TOPPViewBase::spectra_identification_view_widget_</a></div><div class="ttdeci">SpectraIdentificationViewWidget * spectra_identification_view_widget_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:417</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a9e4df2d1af6490922eacf023a8c550dc"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a9e4df2d1af6490922eacf023a8c550dc">OpenMS::TOPPViewBase::dm_elements_2d_</a></div><div class="ttdeci">QAction * dm_elements_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:467</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a85911b3f843b60895ee1f6b08ee493e6"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a85911b3f843b60895ee1f6b08ee493e6">OpenMS::TOPPViewBase::dm_hull_2d_</a></div><div class="ttdeci">QAction * dm_hull_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:461</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a7a216ea295885fbe63668eb9a1d3a60c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a7a216ea295885fbe63668eb9a1d3a60c">OpenMS::TOPPViewBase::watcher_</a></div><div class="ttdeci">FileWatcher * watcher_</div><div class="ttdoc">Watcher that tracks file changes (in order to update the data in the different views) ...</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:430</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a19a2651887fa4d874edfe6a94b54b2d5"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a19a2651887fa4d874edfe6a94b54b2d5">OpenMS::TOPPViewBase::in</a></div><div class="ttdeci">String in</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:511</div></div>
<div class="ttc" id="DefaultParamHandler_8h_html"><div class="ttname"><a href="DefaultParamHandler_8h.html">DefaultParamHandler.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a5b000202562a833b20e15149a17ee459"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a5b000202562a833b20e15149a17ee459">OpenMS::TOPPViewBase::zoom_together_</a></div><div class="ttdeci">bool zoom_together_</div><div class="ttdoc">Stores whether the individual windows should zoom together (be linked) or not. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:436</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a040fdfd93b8da7d83618c0c76fc1d88e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">OpenMS::LayerData::ExperimentSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ExperimentType > ExperimentSharedPtrType</div><div class="ttdoc">SharedPtr on MSExperiment. </div><div class="ttdef"><b>Definition:</b> LayerData.h:120</div></div>
<div class="ttc" id="classQWorkspace_html"><div class="ttname"><a href="classQWorkspace.html">QWorkspace</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a7a3412234a88a268b5194714cc18fdda"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a7a3412234a88a268b5194714cc18fdda">OpenMS::TOPPViewBase::timer</a></div><div class="ttdeci">QTime timer</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:518</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_af2c67af308d61d1f4e04f3959850d5ba"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#af2c67af308d61d1f4e04f3959850d5ba">OpenMS::TOPPViewBase::layer_dock_widget_</a></div><div class="ttdeci">QDockWidget * layer_dock_widget_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:409</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aa1584dc2753f3cbd3cc0cc3617f6e1d8"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aa1584dc2753f3cbd3cc0cc3617f6e1d8">OpenMS::TOPPViewBase::watcher_msgbox_</a></div><div class="ttdeci">bool watcher_msgbox_</div><div class="ttdoc">Holds the messageboxes for each layer that are currently popped up (to avoid popping them up again...</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:433</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a8e7e4ba7ac10d568d727da112b75da0e"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a8e7e4ba7ac10d568d727da112b75da0e">OpenMS::TOPPViewBase::dm_ident_2d_</a></div><div class="ttdeci">QAction * dm_ident_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:469</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a9376933d312fb4acd2b0d172c9f2b054"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a9376933d312fb4acd2b0d172c9f2b054">OpenMS::TOPPViewBase::spectrum_id</a></div><div class="ttdeci">Size spectrum_id</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:516</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum< PeakType ></a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_af2a85a41b0a09a478227e0250b20bfad"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#af2a85a41b0a09a478227e0250b20bfad">OpenMS::TOPPViewBase::spectra_view_widget_</a></div><div class="ttdeci">SpectraViewWidget * spectra_view_widget_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:416</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a3dcea6d5dabb846ad74ec9ade9e854ce"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a3dcea6d5dabb846ad74ec9ade9e854ce">OpenMS::TOPPViewBase::mz_label_</a></div><div class="ttdeci">QLabel * mz_label_</div><div class="ttdoc">m/z label for messages in the status bar </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:484</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_abd2d3572dc5e36c44021d68796e50631"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#abd2d3572dc5e36c44021d68796e50631">OpenMS::TOPPViewBase::spectraview_behavior_</a></div><div class="ttdeci">TOPPViewSpectraViewBehavior * spectraview_behavior_</div><div class="ttdoc">TOPPView behavior for the spectra view. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:557</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a61f4e5d1d9e5406392401123630a54a1"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a61f4e5d1d9e5406392401123630a54a1">OpenMS::TOPPViewBase::FeatureMapSharedPtrType</a></div><div class="ttdeci">LayerData::FeatureMapSharedPtrType FeatureMapSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:118</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ad2277dd96639dd7d8fe4c75f4212c993"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ad2277dd96639dd7d8fe4c75f4212c993">OpenMS::TOPPViewBase::window_id</a></div><div class="ttdeci">UInt window_id</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:515</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ad754716e5ea05dfffa1e048774643960"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ad754716e5ea05dfffa1e048774643960">OpenMS::TOPPViewBase::param</a></div><div class="ttdeci">Param param</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:509</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a6b7c69812e37a065cbb1a36f7679198f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a6b7c69812e37a065cbb1a36f7679198f">OpenMS::TOPPViewBase::group_label_2d_</a></div><div class="ttdeci">QActionGroup * group_label_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:464</div></div>
<div class="ttc" id="classOpenMS_1_1Spectrum1DWidget_html"><div class="ttname"><a href="classOpenMS_1_1Spectrum1DWidget.html">OpenMS::Spectrum1DWidget</a></div><div class="ttdoc">Widget for visualization of several spectra. </div><div class="ttdef"><b>Definition:</b> Spectrum1DWidget.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a92a35eff69acaaa04fef5bba6bae9fc1"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">OpenMS::LayerData::ConsensusMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ConsensusMap > ConsensusMapSharedPtrType</div><div class="ttdoc">SharedPtr on consensus features. </div><div class="ttdef"><b>Definition:</b> LayerData.h:114</div></div>
<div class="ttc" id="FileWatcher_8h_html"><div class="ttname"><a href="FileWatcher_8h.html">FileWatcher.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumWidget_html"><div class="ttname"><a href="classOpenMS_1_1SpectrumWidget.html">OpenMS::SpectrumWidget</a></div><div class="ttdoc">Base class for spectrum widgets. </div><div class="ttdef"><b>Definition:</b> SpectrumWidget.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907">OpenMS::TOPPViewBase::LS_WARNING</a></div><div class="ttdoc">Warning. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:534</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a196052a317551f9d31b3a1dff0dfaaa9"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a196052a317551f9d31b3a1dff0dfaaa9">OpenMS::TOPPViewBase::views_tabwidget_</a></div><div class="ttdeci">QTabWidget * views_tabwidget_</div><div class="ttdoc">Tabwidget that hold the different views on the loaded data. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:551</div></div>
<div class="ttc" id="classOpenMS_1_1DBConnection_html"><div class="ttname"><a href="classOpenMS_1_1DBConnection.html">OpenMS::DBConnection</a></div><div class="ttdoc">A class for connecting to a SQL database. </div><div class="ttdef"><b>Definition:</b> DBConnection.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a623037882cb2679ffbe4bdc67da31ed6"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a623037882cb2679ffbe4bdc67da31ed6">OpenMS::TOPPViewBase::CAPTION_3D_SUFFIX_</a></div><div class="ttdeci">static const String CAPTION_3D_SUFFIX_</div><div class="ttdoc">Suffix appended to caption of tabs when layer is shown in 3D. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:575</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_af7f622f316bc14466000ee9230fba7b2"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">OpenMS::LayerData::FeatureMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< FeatureMap<> > FeatureMapSharedPtrType</div><div class="ttdoc">SharedPtr on feature map. </div><div class="ttdef"><b>Definition:</b> LayerData.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1Spectrum3DWidget_html"><div class="ttname"><a href="classOpenMS_1_1Spectrum3DWidget.html">OpenMS::Spectrum3DWidget</a></div><div class="ttdoc">Widget for 3D-visualization of map data. </div><div class="ttdef"><b>Definition:</b> Spectrum3DWidget.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ab64766cccc4f8fdf5c87b8bcc9493c4a"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ab64766cccc4f8fdf5c87b8bcc9493c4a">OpenMS::TOPPViewBase::out</a></div><div class="ttdeci">String out</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:512</div></div>
<div class="ttc" id="classOpenMS_1_1Param_html"><div class="ttname"><a href="classOpenMS_1_1Param.html">OpenMS::Param</a></div><div class="ttdoc">Management and storage of parameters / INI files. </div><div class="ttdef"><b>Definition:</b> Param.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewSpectraViewBehavior_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html">OpenMS::TOPPViewSpectraViewBehavior</a></div><div class="ttdoc">Behavior of TOPPView in spectra view mode. </div><div class="ttdef"><b>Definition:</b> TOPPViewSpectraViewBehavior.h:50</div></div>
<div class="ttc" id="SpectraIdentificationViewWidget_8h_html"><div class="ttname"><a href="SpectraIdentificationViewWidget_8h.html">SpectraIdentificationViewWidget.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a76a5712e890e5c24fb148a9a221b674e"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a76a5712e890e5c24fb148a9a221b674e">OpenMS::TOPPViewBase::intensity_button_group_</a></div><div class="ttdeci">QButtonGroup * intensity_button_group_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:449</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aceb6f7383425404eb264912994d2845e"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aceb6f7383425404eb264912994d2845e">OpenMS::TOPPViewBase::dm_unassigned_2d_</a></div><div class="ttdeci">QToolButton * dm_unassigned_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:465</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ac95bf715314bd478482ad36021db3e7c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ac95bf715314bd478482ad36021db3e7c">OpenMS::TOPPViewBase::tool_bar_</a></div><div class="ttdeci">QToolBar * tool_bar_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:446</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">OpenMS::TOPPViewBase::LS_NOTICE</a></div><div class="ttdoc">Notice. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:533</div></div>
<div class="ttc" id="classOpenMS_1_1StringList_html"><div class="ttname"><a href="classOpenMS_1_1StringList.html">OpenMS::StringList</a></div><div class="ttdoc">String list. </div><div class="ttdef"><b>Definition:</b> StringList.h:56</div></div>
<div class="ttc" id="classQMainWindow_html"><div class="ttname"><a href="classQMainWindow.html">QMainWindow</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a2d213378ad7f5fb2aa6e5c7e00c6542f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a2d213378ad7f5fb2aa6e5c7e00c6542f">OpenMS::TOPPViewBase::recent_files_</a></div><div class="ttdeci">QStringList recent_files_</div><div class="ttdoc">list of the recently opened files </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:496</div></div>
<div class="ttc" id="classOpenMS_1_1SpectraIdentificationViewWidget_html"><div class="ttname"><a href="classOpenMS_1_1SpectraIdentificationViewWidget.html">OpenMS::SpectraIdentificationViewWidget</a></div><div class="ttdoc">Tabular visualization / selection of identified specra. </div><div class="ttdef"><b>Definition:</b> SpectraIdentificationViewWidget.h:53</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1EnhancedWorkspace_html"><div class="ttname"><a href="classOpenMS_1_1EnhancedWorkspace.html">OpenMS::EnhancedWorkspace</a></div><div class="ttdef"><b>Definition:</b> EnhancedWorkspace.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBehaviorInterface_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBehaviorInterface.html">OpenMS::TOPPViewBehaviorInterface</a></div><div class="ttdoc">Interface class to model different behaviors of TOPPView. </div><div class="ttdef"><b>Definition:</b> TOPPViewBehaviorInterface.h:47</div></div>
<div class="ttc" id="classQLineEdit_html"><div class="ttname"><a href="classQLineEdit.html">QLineEdit</a></div></div>
<div class="ttc" id="SpectrumCanvas_8h_html"><div class="ttname"><a href="SpectrumCanvas_8h.html">SpectrumCanvas.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a25fc0d0af7fa6b9118e460ff06bbd36c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">OpenMS::TOPPViewBase::LogState</a></div><div class="ttdeci">LogState</div><div class="ttdoc">Log message states. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:531</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a1677bf5b0d92653ce88e642a2347429c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a1677bf5b0d92653ce88e642a2347429c">OpenMS::TOPPViewBase::views_dockwidget_</a></div><div class="ttdeci">QDockWidget * views_dockwidget_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:410</div></div>
<div class="ttc" id="classOpenMS_1_1EnhancedTabBarWidgetInterface_html"><div class="ttname"><a href="classOpenMS_1_1EnhancedTabBarWidgetInterface.html">OpenMS::EnhancedTabBarWidgetInterface</a></div><div class="ttdoc">Widgets that are placed into an EnhancedTabBar must implement this interface. </div><div class="ttdef"><b>Definition:</b> EnhancedTabBarWidgetInterface.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_aa7a5e927821becd67a3545a8a5ad1f6f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#aa7a5e927821becd67a3545a8a5ad1f6f">OpenMS::TOPPViewBase::FeatureMapType</a></div><div class="ttdeci">LayerData::FeatureMapType FeatureMapType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a127d69d25a07771a5d75ad5fbfd9c4c8"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a127d69d25a07771a5d75ad5fbfd9c4c8">OpenMS::TOPPViewBase::log_</a></div><div class="ttdeci">QTextEdit * log_</div><div class="ttdoc">Log output window. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:441</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ac66f8525af1184339d19d3de32486b0a"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ac66f8525af1184339d19d3de32486b0a">OpenMS::TOPPViewBase::layer_manager_</a></div><div class="ttdeci">QListWidget * layer_manager_</div><div class="ttdoc">Layer management widget. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:421</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a76aef0524145f15bd72818eeb466799d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a76aef0524145f15bd72818eeb466799d">OpenMS::TOPPViewBase::group_unassigned_2d_</a></div><div class="ttdeci">QActionGroup * group_unassigned_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:466</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a9adee9ecc0322b4d43cf56318c7cdf5b"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a9adee9ecc0322b4d43cf56318c7cdf5b">OpenMS::TOPPViewBase::ws_</a></div><div class="ttdeci">EnhancedWorkspace * ws_</div><div class="ttdoc">Main workspace. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:473</div></div>
<div class="ttc" id="classOpenMS_1_1DefaultParamHandler_html"><div class="ttname"><a href="classOpenMS_1_1DefaultParamHandler.html">OpenMS::DefaultParamHandler</a></div><div class="ttdoc">A base class for all classes handling default parameters. </div><div class="ttdef"><b>Definition:</b> DefaultParamHandler.h:90</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ad7e2bb620199713343abf73d1f56fb78"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ad7e2bb620199713343abf73d1f56fb78">OpenMS::TOPPViewBase::current_path_</a></div><div class="ttdeci">String current_path_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:548</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a3164ba2ec5ebaa2b9743f6d2f37c09e6"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a3164ba2ec5ebaa2b9743f6d2f37c09e6">OpenMS::TOPPViewBase::tab_bar_</a></div><div class="ttdeci">EnhancedTabBar * tab_bar_</div><div class="ttdoc">Tab bar. The address of the corresponding window to a tab is stored as an int in tabData() ...</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:476</div></div>
<div class="ttc" id="classOpenMS_1_1FileWatcher_html"><div class="ttname"><a href="classOpenMS_1_1FileWatcher.html">OpenMS::FileWatcher</a></div><div class="ttdoc">Watcher that monitors file changes. </div><div class="ttdef"><b>Definition:</b> FileWatcher.h:66</div></div>
<div class="ttc" id="SpectraViewWidget_8h_html"><div class="ttname"><a href="SpectraViewWidget_8h.html">SpectraViewWidget.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a43f7661c6feb07a89f1e2046420f984d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a43f7661c6feb07a89f1e2046420f984d">OpenMS::TOPPViewBase::filters_check_box_</a></div><div class="ttdeci">QCheckBox * filters_check_box_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:426</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ac3eb91f6aacdfb23d36ef8947037d718"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ac3eb91f6aacdfb23d36ef8947037d718">OpenMS::TOPPViewBase::add_2d_context_</a></div><div class="ttdeci">QMenu * add_2d_context_</div><div class="ttdoc">Additional context menu for 2D layers. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:541</div></div>
<div class="ttc" id="classQProcess_html"><div class="ttname"><a href="classQProcess.html">QProcess</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a3f7689ee425242f14e0b94bd48008c9d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a3f7689ee425242f14e0b94bd48008c9d">OpenMS::TOPPViewBase::dm_label_2d_</a></div><div class="ttdeci">QToolButton * dm_label_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:463</div></div>
<div class="ttc" id="classQTextEdit_html"><div class="ttname"><a href="classQTextEdit.html">QTextEdit</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a708627433d665c8aeadf7d7cbcb98223"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a708627433d665c8aeadf7d7cbcb98223">OpenMS::TOPPViewBase::dm_precursors_2d_</a></div><div class="ttdeci">QAction * dm_precursors_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:460</div></div>
<div class="ttc" id="SpectrumWidget_8h_html"><div class="ttname"><a href="SpectrumWidget_8h.html">SpectrumWidget.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a34f478480833f630c4670430e7e562e9"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a34f478480833f630c4670430e7e562e9">OpenMS::TOPPViewBase::process</a></div><div class="ttdeci">QProcess * process</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:517</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html"><div class="ttname"><a href="classOpenMS_1_1LayerData.html">OpenMS::LayerData</a></div><div class="ttdoc">Class that stores the data for one layer. </div><div class="ttdef"><b>Definition:</b> LayerData.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a0da7b99d2cbe1849595d13333c41132d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a0da7b99d2cbe1849595d13333c41132d">OpenMS::TOPPViewBase::ExperimentType</a></div><div class="ttdeci">LayerData::ExperimentType ExperimentType</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:126</div></div>
<div class="ttc" id="classOpenMS_1_1EnhancedTabBar_html"><div class="ttname"><a href="classOpenMS_1_1EnhancedTabBar.html">OpenMS::EnhancedTabBar</a></div><div class="ttdoc">Convenience tab bar implementation. </div><div class="ttdef"><b>Definition:</b> EnhancedTabBar.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_ab2df52d724fe0b69ff3e491f323d405c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#ab2df52d724fe0b69ff3e491f323d405c">OpenMS::TOPPViewBase::projections_2d_</a></div><div class="ttdeci">QAction * projections_2d_</div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:468</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html_a5b2d7132d44f448e9ebdeca542d01827"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html#a5b2d7132d44f448e9ebdeca542d01827">OpenMS::TOPPViewBase::SpectrumType</a></div><div class="ttdeci">ExperimentType::SpectrumType SpectrumType</div><div class="ttdoc">Peak spectrum type. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:130</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:22 using doxygen 1.8.5</font></TD>
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