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<a href="TOPPViewIdentificationViewBehavior_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Timo Sachsenberg$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Timo Sachsenberg $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="SpectrumSettings_8h.html">OpenMS/METADATA/SpectrumSettings.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="LayerData_8h.html">OpenMS/VISUAL/LayerData.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="TOPPViewBehaviorInterface_8h.html">OpenMS/VISUAL/TOPPViewBehaviorInterface.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> {</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keyword">class </span>TOPPViewBase;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html"> 50</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html">TOPPViewIdentificationViewBehavior</a> :</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1TOPPViewBehaviorInterface.html">TOPPViewBehaviorInterface</a></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  {</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  Q_OBJECT</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="comment">//Feature map type</span></div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#aa7a5e927821becd67a3545a8a5ad1f6f"> 57</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1FeatureMap.html">LayerData::FeatureMapType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#aa7a5e927821becd67a3545a8a5ad1f6f">FeatureMapType</a>;</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="comment">//Feature map managed type</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a61f4e5d1d9e5406392401123630a54a1"> 59</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">LayerData::FeatureMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a61f4e5d1d9e5406392401123630a54a1">FeatureMapSharedPtrType</a>;</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="comment">//Consensus feature map type</span></div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7131cd010b1a62bb91f4906ed9d8d070"> 62</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">LayerData::ConsensusMapType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7131cd010b1a62bb91f4906ed9d8d070">ConsensusMapType</a>;</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="comment">//Consensus map managed type</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a58909d1bd31f10639864202b79f6492f"> 64</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">LayerData::ConsensusMapSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a58909d1bd31f10639864202b79f6492f">ConsensusMapSharedPtrType</a>;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> </div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="comment">//Peak map type</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a0da7b99d2cbe1849595d13333c41132d"> 67</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSExperiment.html">LayerData::ExperimentType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a0da7b99d2cbe1849595d13333c41132d">ExperimentType</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="comment">//Main managed data type (experiment)</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a1ae7f709c195f177bf6e0fc9755a81ca"> 69</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">LayerData::ExperimentSharedPtrType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a1ae7f709c195f177bf6e0fc9755a81ca">ExperimentSharedPtrType</a>;</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a5b2d7132d44f448e9ebdeca542d01827"> 71</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">ExperimentType::SpectrumType</a> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a5b2d7132d44f448e9ebdeca542d01827">SpectrumType</a>;</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a44daf8bca1aabff5a057dfb14e6e9720">TOPPViewIdentificationViewBehavior</a>(<a class="code" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a> * parent);</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="keyword">public</span> slots:</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a660cb2a4f1f32c8bc046c9bd70e9a034">showSpectrumAs1D</a>(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">activate1DSpectrum</a>(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">activate1DSpectrum</a>(std::vector<<span class="keywordtype">int</span>, std::allocator<int> > indices);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab41a7f33dcd96c9465e4ec1caf532c85">deactivate1DSpectrum</a>(<span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">activateBehavior</a>();</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab6dc94d84091598fa06ac6fdc723997a">deactivateBehavior</a>();</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab45b87d30b12aec08e443804ec761d1a">setVisibleArea1D</a>(<a class="code" href="classdouble.html">DoubleReal</a> l, <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#aa6e8e201edf24007dc075bfef6e8210c">h</a>);</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7fe77b331367b1eb2b04311f25ef48a4">addPrecursorLabels1D_</a>(<span class="keyword">const</span> std::vector<Precursor> & pcs);</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a6715ad5df2d86c4287f8608be9a02f86">removeTemporaryAnnotations_</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum_index);</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a217c453a1ab4f11be27685e3d9f38fde">addTheoreticalSpectrumLayer_</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> & ph);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a2202560d41bc3ce8d51b52d5b6fb969d">removeTheoreticalSpectrumLayer_</a>();</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a9484b7e630c9f1d8abb3bf4733322239"> 113</a></span>  <a class="code" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a> * <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a9484b7e630c9f1d8abb3bf4733322239">tv_</a>;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#af1640ee25112566041bc61a76d635e0d"> 116</a></span>  std::vector<Annotation1DItem *> <a class="code" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#af1640ee25112566041bc61a76d635e0d">temporary_annotations_</a>;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  };</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> }</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> <span class="preprocessor">#endif // OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H</span></div>
<div class="ttc" id="TOPPViewBehaviorInterface_8h_html"><div class="ttname"><a href="TOPPViewBehaviorInterface_8h.html">TOPPViewBehaviorInterface.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a2202560d41bc3ce8d51b52d5b6fb969d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a2202560d41bc3ce8d51b52d5b6fb969d">OpenMS::TOPPViewIdentificationViewBehavior::removeTheoreticalSpectrumLayer_</a></div><div class="ttdeci">void removeTheoreticalSpectrumLayer_()</div><div class="ttdoc">removes all layer with theoretical spectrum generated in identification view </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html">OpenMS::TOPPViewIdentificationViewBehavior</a></div><div class="ttdoc">Behavior of TOPPView in identification mode. </div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a61f4e5d1d9e5406392401123630a54a1"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a61f4e5d1d9e5406392401123630a54a1">OpenMS::TOPPViewIdentificationViewBehavior::FeatureMapSharedPtrType</a></div><div class="ttdeci">LayerData::FeatureMapSharedPtrType FeatureMapSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBase_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBase.html">OpenMS::TOPPViewBase</a></div><div class="ttdoc">Main window of TOPPView tool. </div><div class="ttdef"><b>Definition:</b> TOPPViewBase.h:104</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap</a></div><div class="ttdoc">A container for features. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_ab41a7f33dcd96c9465e4ec1caf532c85"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab41a7f33dcd96c9465e4ec1caf532c85">OpenMS::TOPPViewIdentificationViewBehavior::deactivate1DSpectrum</a></div><div class="ttdeci">virtual void deactivate1DSpectrum(int index)</div><div class="ttdoc">Behavior for deactivate1DSpectrum. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_af1640ee25112566041bc61a76d635e0d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#af1640ee25112566041bc61a76d635e0d">OpenMS::TOPPViewIdentificationViewBehavior::temporary_annotations_</a></div><div class="ttdeci">std::vector< Annotation1DItem * > temporary_annotations_</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_ab6dc94d84091598fa06ac6fdc723997a"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab6dc94d84091598fa06ac6fdc723997a">OpenMS::TOPPViewIdentificationViewBehavior::deactivateBehavior</a></div><div class="ttdeci">virtual void deactivateBehavior()</div><div class="ttdoc">Slot for behavior deactivation. </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a550461e8df23adc47814657d14fa7e4c"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">OpenMS::TOPPViewIdentificationViewBehavior::activate1DSpectrum</a></div><div class="ttdeci">virtual void activate1DSpectrum(int index)</div><div class="ttdoc">Behavior for activate1DSpectrum. </div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a040fdfd93b8da7d83618c0c76fc1d88e"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a040fdfd93b8da7d83618c0c76fc1d88e">OpenMS::LayerData::ExperimentSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ExperimentType > ExperimentSharedPtrType</div><div class="ttdoc">SharedPtr on MSExperiment. </div><div class="ttdef"><b>Definition:</b> LayerData.h:120</div></div>
<div class="ttc" id="LayerData_8h_html"><div class="ttname"><a href="LayerData_8h.html">LayerData.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a44daf8bca1aabff5a057dfb14e6e9720"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a44daf8bca1aabff5a057dfb14e6e9720">OpenMS::TOPPViewIdentificationViewBehavior::TOPPViewIdentificationViewBehavior</a></div><div class="ttdeci">TOPPViewIdentificationViewBehavior(TOPPViewBase *parent)</div><div class="ttdoc">Construct the behaviour with its parent. </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a1ae7f709c195f177bf6e0fc9755a81ca"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a1ae7f709c195f177bf6e0fc9755a81ca">OpenMS::TOPPViewIdentificationViewBehavior::ExperimentSharedPtrType</a></div><div class="ttdeci">LayerData::ExperimentSharedPtrType ExperimentSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_aa7a5e927821becd67a3545a8a5ad1f6f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#aa7a5e927821becd67a3545a8a5ad1f6f">OpenMS::TOPPViewIdentificationViewBehavior::FeatureMapType</a></div><div class="ttdeci">LayerData::FeatureMapType FeatureMapType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:57</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum< PeakType ></a></div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_ab45b87d30b12aec08e443804ec761d1a"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab45b87d30b12aec08e443804ec761d1a">OpenMS::TOPPViewIdentificationViewBehavior::setVisibleArea1D</a></div><div class="ttdeci">void setVisibleArea1D(DoubleReal l, DoubleReal h)</div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html">OpenMS::PeptideHit</a></div><div class="ttdoc">Representation of a peptide hit. </div><div class="ttdef"><b>Definition:</b> PeptideHit.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_a92a35eff69acaaa04fef5bba6bae9fc1"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#a92a35eff69acaaa04fef5bba6bae9fc1">OpenMS::LayerData::ConsensusMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< ConsensusMap > ConsensusMapSharedPtrType</div><div class="ttdoc">SharedPtr on consensus features. </div><div class="ttdef"><b>Definition:</b> LayerData.h:114</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a660cb2a4f1f32c8bc046c9bd70e9a034"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a660cb2a4f1f32c8bc046c9bd70e9a034">OpenMS::TOPPViewIdentificationViewBehavior::showSpectrumAs1D</a></div><div class="ttdeci">virtual void showSpectrumAs1D(int index)</div><div class="ttdoc">Behavior for showSpectraumAs1D. </div></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_aa6e8e201edf24007dc075bfef6e8210c"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#aa6e8e201edf24007dc075bfef6e8210c">OpenMS::Constants::h</a></div><div class="ttdeci">const double h</div></div>
<div class="ttc" id="classOpenMS_1_1LayerData_html_af7f622f316bc14466000ee9230fba7b2"><div class="ttname"><a href="classOpenMS_1_1LayerData.html#af7f622f316bc14466000ee9230fba7b2">OpenMS::LayerData::FeatureMapSharedPtrType</a></div><div class="ttdeci">boost::shared_ptr< FeatureMap<> > FeatureMapSharedPtrType</div><div class="ttdoc">SharedPtr on feature map. </div><div class="ttdef"><b>Definition:</b> LayerData.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a217c453a1ab4f11be27685e3d9f38fde"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a217c453a1ab4f11be27685e3d9f38fde">OpenMS::TOPPViewIdentificationViewBehavior::addTheoreticalSpectrumLayer_</a></div><div class="ttdeci">void addTheoreticalSpectrumLayer_(const PeptideHit &ph)</div><div class="ttdoc">Adds a theoretical spectrum as set from the preferences dialog for the peptide hit. </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a5b2d7132d44f448e9ebdeca542d01827"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a5b2d7132d44f448e9ebdeca542d01827">OpenMS::TOPPViewIdentificationViewBehavior::SpectrumType</a></div><div class="ttdeci">ExperimentType::SpectrumType SpectrumType</div><div class="ttdoc">Peak spectrum type. </div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:71</div></div>
<div class="ttc" id="SpectrumSettings_8h_html"><div class="ttname"><a href="SpectrumSettings_8h.html">SpectrumSettings.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a7131cd010b1a62bb91f4906ed9d8d070"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7131cd010b1a62bb91f4906ed9d8d070">OpenMS::TOPPViewIdentificationViewBehavior::ConsensusMapType</a></div><div class="ttdeci">LayerData::ConsensusMapType ConsensusMapType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:62</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewBehaviorInterface_html"><div class="ttname"><a href="classOpenMS_1_1TOPPViewBehaviorInterface.html">OpenMS::TOPPViewBehaviorInterface</a></div><div class="ttdoc">Interface class to model different behaviors of TOPPView. </div><div class="ttdef"><b>Definition:</b> TOPPViewBehaviorInterface.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a8d1a9183b4f49dfa1afa2879836a40d3"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">OpenMS::TOPPViewIdentificationViewBehavior::activateBehavior</a></div><div class="ttdeci">virtual void activateBehavior()</div><div class="ttdoc">Slot for behavior activation. </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a58909d1bd31f10639864202b79f6492f"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a58909d1bd31f10639864202b79f6492f">OpenMS::TOPPViewIdentificationViewBehavior::ConsensusMapSharedPtrType</a></div><div class="ttdeci">LayerData::ConsensusMapSharedPtrType ConsensusMapSharedPtrType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a9484b7e630c9f1d8abb3bf4733322239"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a9484b7e630c9f1d8abb3bf4733322239">OpenMS::TOPPViewIdentificationViewBehavior::tv_</a></div><div class="ttdeci">TOPPViewBase * tv_</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:113</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a0da7b99d2cbe1849595d13333c41132d"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a0da7b99d2cbe1849595d13333c41132d">OpenMS::TOPPViewIdentificationViewBehavior::ExperimentType</a></div><div class="ttdeci">LayerData::ExperimentType ExperimentType</div><div class="ttdef"><b>Definition:</b> TOPPViewIdentificationViewBehavior.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a7fe77b331367b1eb2b04311f25ef48a4"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7fe77b331367b1eb2b04311f25ef48a4">OpenMS::TOPPViewIdentificationViewBehavior::addPrecursorLabels1D_</a></div><div class="ttdeci">void addPrecursorLabels1D_(const std::vector< Precursor > &pcs)</div><div class="ttdoc">Adds labels for the provided precursors to the 1D spectrum. </div></div>
<div class="ttc" id="classOpenMS_1_1TOPPViewIdentificationViewBehavior_html_a6715ad5df2d86c4287f8608be9a02f86"><div class="ttname"><a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a6715ad5df2d86c4287f8608be9a02f86">OpenMS::TOPPViewIdentificationViewBehavior::removeTemporaryAnnotations_</a></div><div class="ttdeci">void removeTemporaryAnnotations_(Size spectrum_index)</div><div class="ttdoc">Removes the precursor labels for from the specified 1D spectrum. </div></div>
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