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<div class="textblock"><code>#include &lt;<a class="el" href="StandardTypes_8h_source.html">OpenMS/KERNEL/StandardTypes.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="CVTerm_8h_source.html">OpenMS/METADATA/CVTerm.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="CVTermList_8h_source.html">OpenMS/METADATA/CVTermList.h</a>&gt;</code><br/>
<code>#include &lt;boost/numeric/conversion/cast.hpp&gt;</code><br/>
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<p><a href="TargetedExperimentHelper_8h_source.html">Go to the source code of this file.</a></p>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html">CV</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html">Peptide::Modification</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a></td></tr>
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<tr class="memitem:namespaceOpenMS"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html">OpenMS</a></td></tr>
<tr class="memdesc:namespaceOpenMS"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main OpenMS namespace. <br/></td></tr>
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<tr class="memitem:namespaceOpenMS_1_1TargetedExperimentHelper"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html">OpenMS::TargetedExperimentHelper</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1TargetedExperimentHelper"><td class="mdescLeft">&#160;</td><td class="mdescRight">This class stores helper structures that are used in multiple classes of the <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> (e.g. <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html" title="This class stores a SRM/MRM transition. ">ReactionMonitoringTransition</a> and <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html" title="This class stores a SRM/MRM transition. ">IncludeExcludeTarget</a>). <br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:ab235a14eca5a54244a08b3e10a180e6f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#ab235a14eca5a54244a08b3e10a180e6f">getAASequence</a> (const Peptide &amp;peptide)</td></tr>
<tr class="memdesc:ab235a14eca5a54244a08b3e10a180e6f"><td class="mdescLeft">&#160;</td><td class="mdescRight">helper function that converts a <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> object to a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object  <a href="#ab235a14eca5a54244a08b3e10a180e6f">More...</a><br/></td></tr>
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<tr class="memitem:af43c41475ceea0dc1fa07f4957c816e7"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#af43c41475ceea0dc1fa07f4957c816e7">setModification</a> (int location, int max_size, String modification, <a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> &amp;aas)</td></tr>
<tr class="memdesc:af43c41475ceea0dc1fa07f4957c816e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">helper function that sets a modifiction on a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object  <a href="#af43c41475ceea0dc1fa07f4957c816e7">More...</a><br/></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5</font></TD>
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