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<a href="TargetedExperimentHelper_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Andreas Bertsch $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_ANALYSIS_TARGETED_TARGETEDEXPERIMENTHELPER_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_TARGETED_TARGETEDEXPERIMENTHELPER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="StandardTypes_8h.html">OpenMS/KERNEL/StandardTypes.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="CVTerm_8h.html">OpenMS/METADATA/CVTerm.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="CVTermList_8h.html">OpenMS/METADATA/CVTermList.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <boost/numeric/conversion/cast.hpp></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">namespace </span>TargetedExperimentHelper</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html"> 55</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a> :</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  {</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#ad62d9f30c082718dc2f8a1f186b81e4f"> 58</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a>;</div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#a27eeff90c8601b96e8c11d1468eada08"> 59</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#a27eeff90c8601b96e8c11d1468eada08">instrument_ref</a>;</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aca7cd7aa8928bc47d577c6e77faedebf"> 60</a></span>  std::vector<CVTermList> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aca7cd7aa8928bc47d577c6e77faedebf">validations</a>;</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aae1ab13aa03b2a3c786f8738a6f448e5"> 62</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aae1ab13aa03b2a3c786f8738a6f448e5">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a> & rhs)</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  {</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordflow">if</span> (<span class="keyword">this</span> != &rhs)</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  {</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#a27eeff90c8601b96e8c11d1468eada08">instrument_ref</a> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#a27eeff90c8601b96e8c11d1468eada08">instrument_ref</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aca7cd7aa8928bc47d577c6e77faedebf">validations</a> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aca7cd7aa8928bc47d577c6e77faedebf">validations</a>;</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  }</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  }</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  };</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html"> 76</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html">CV</a></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  {</div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aa18c13e9945fd4e877017f69bdaad1af"> 78</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aa18c13e9945fd4e877017f69bdaad1af">CV</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & new_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & new_fullname, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & new_version, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & new_URI) :</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a76010eef1edc0406cc2375c25d2a433d">id</a>(new_id),</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098">fullname</a>(new_fullname),</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0">version</a>(new_version),</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f">URI</a>(new_URI)</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  {</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  }</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a76010eef1edc0406cc2375c25d2a433d"> 87</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098"> 88</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098">fullname</a>;</div>
<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0"> 89</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0">version</a>;</div>
<div class="line"><a name="l00090"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f"> 90</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f">URI</a>;</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a2018605693c72cc9946330807580722c"> 92</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a2018605693c72cc9946330807580722c">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html">CV</a> & cv)<span class="keyword"> const</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="keywordflow">return</span> <span class="keywordtype">id</span> == cv.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a76010eef1edc0406cc2375c25d2a433d">id</a> &&</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098">fullname</a> == cv.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098">fullname</a> &&</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0">version</a> == cv.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0">version</a> &&</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f">URI</a> == cv.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f">URI</a>;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  }</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  };</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span> </div>
<div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html"> 102</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a> :</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  {</div>
<div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a928c956fd48fac5349a5d34b1e09ee65"> 105</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a928c956fd48fac5349a5d34b1e09ee65">Protein</a>() :</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  {</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  }</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a76010eef1edc0406cc2375c25d2a433d"> 110</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d"> 111</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a208edec3929178af163d811f930511fb"> 113</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a208edec3929178af163d811f930511fb">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a76010eef1edc0406cc2375c25d2a433d">id</a> &&</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a> == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  }</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#ae93fd9f5bc61a9d7b6d9b45ccfb27cfb"> 120</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#ae93fd9f5bc61a9d7b6d9b45ccfb27cfb">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a> & rhs)</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  {</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  {</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a>;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  }</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  }</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  };</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> </div>
<div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html"> 133</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a> :</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  {</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a68ee66e5ca82ec8ba9c2c85326da91cf"> 138</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a68ee66e5ca82ec8ba9c2c85326da91cf">RetentionTime</a>() :</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  {</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  }</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span> </div>
<div class="line"><a name="l00143"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a6a3cc00b5223e2eb652d65c8e87015cc"> 143</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a6a3cc00b5223e2eb652d65c8e87015cc">RetentionTime</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a> & rhs) :</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>(rhs),</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  software_ref(rhs.software_ref)</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  {</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  }</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a4854e82c2bb86ae4dc2ca0d09f8b26d2"> 149</a></span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a4854e82c2bb86ae4dc2ca0d09f8b26d2">~RetentionTime</a>()</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  {</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  }</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#aab3bc2c27daa4d3de4952f50cb97c392"> 153</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a> & <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#aab3bc2c27daa4d3de4952f50cb97c392">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a> & rhs)</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  {</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  {</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  software_ref = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  }</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  }</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00163"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#ac6c3998d62daee33db4a868ca568d418"> 163</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#ac6c3998d62daee33db4a868ca568d418">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  software_ref == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  }</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> </div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a2c4f51281e6fd6b4676ee60517b70694"> 169</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  };</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> </div>
<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html"> 172</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a> :</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  {</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> </div>
<div class="line"><a name="l00177"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aca20a707cf7e21040512c429edc78a3d"> 177</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aca20a707cf7e21040512c429edc78a3d">Compound</a>() :</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  {</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  }</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aa6eebaa3b617127f750eb77fdd9db107"> 182</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aa6eebaa3b617127f750eb77fdd9db107">Compound</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a> & rhs) :</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>(rhs),</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  id(rhs.id),</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  rts(rhs.rts)</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  {</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  }</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span> </div>
<div class="line"><a name="l00189"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ac4561b4dc4cd2fae8270175fb182b5df"> 189</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a> & <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ac4561b4dc4cd2fae8270175fb182b5df">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a> & rhs)</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  {</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordflow">if</span> (<span class="keyword">this</span> != &rhs)</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  {</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  rts = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a>;</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  }</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  }</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span> </div>
<div class="line"><a name="l00200"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ab126d4ff8c4dddce407ef6d22b830f02"> 200</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ab126d4ff8c4dddce407ef6d22b830f02">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a76010eef1edc0406cc2375c25d2a433d">id</a> &&</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  rts == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a>;</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  }</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00207"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a76010eef1edc0406cc2375c25d2a433d"> 207</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00208"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a04646756cfb9003cfa0fdbe7bafef165"> 208</a></span>  std::vector<RetentionTime> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a>;</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  };</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> </div>
<div class="line"><a name="l00211"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html"> 211</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> :</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  {</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span> </div>
<div class="line"><a name="l00216"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html"> 216</a></span>  <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html">Modification</a> :</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  {</div>
<div class="line"><a name="l00219"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a36e96373c998fc068aabfa436c6ce8e4"> 219</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a36e96373c998fc068aabfa436c6ce8e4">avg_mass_delta</a>;</div>
<div class="line"><a name="l00220"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a7bbce2c7450610bda61793f7dd12ceed"> 220</a></span>  <span class="keywordtype">int</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a7bbce2c7450610bda61793f7dd12ceed">location</a>;</div>
<div class="line"><a name="l00221"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a71b99cef64e5eb96df9a24b5a600512f"> 221</a></span>  <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a71b99cef64e5eb96df9a24b5a600512f">mono_mass_delta</a>;</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  };</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> </div>
<div class="line"><a name="l00224"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0"> 224</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">Peptide</a>() :</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  {</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  charge_ = -1;</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  peptide_group_label_ = -1;</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span> </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="comment">// we store the actual labels in a static vector which allows us to</span></div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <span class="comment">// store each label only once.</span></div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="keyword">static</span> std::vector<String> * init_peptide_group_labels_ = 0;</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keywordflow">if</span> (init_peptide_group_labels_ == 0)</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  {</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  init_peptide_group_labels_ = <span class="keyword">new</span> std::vector<String>;</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  }</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  peptide_group_labels_ = init_peptide_group_labels_;</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  }</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span> </div>
<div class="line"><a name="l00240"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a"> 240</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a">Peptide</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> & rhs) :</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>(rhs),</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  rts(rhs.rts),</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  id(rhs.id),</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  protein_refs(rhs.protein_refs),</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  evidence(rhs.evidence),</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  sequence(rhs.sequence),</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  mods(rhs.mods),</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  charge_(rhs.charge_),</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  peptide_group_label_(rhs.peptide_group_label_),</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  peptide_group_labels_(rhs.peptide_group_labels_)</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  {</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  }</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6"> 254</a></span>  <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> & <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> & rhs)</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  {</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordflow">if</span> (<span class="keyword">this</span> != &rhs)</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  {</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  rts = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a>;</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  protein_refs = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b">protein_refs</a>;</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  evidence = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a6d12b8955b70824c3983632008b99fe0">evidence</a>;</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  sequence = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a>;</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  mods = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a71db591545de934990079a78b9ae0481">mods</a>;</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  charge_ = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a>;</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  peptide_group_label_ = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499">peptide_group_label_</a>;</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  peptide_group_labels_ = rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db">peptide_group_labels_</a>;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  }</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  }</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span> </div>
<div class="line"><a name="l00272"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a4e89a04d22bd2ad152f40424bea32ae4"> 272</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a4e89a04d22bd2ad152f40424bea32ae4">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  rts == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a> &&</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a76010eef1edc0406cc2375c25d2a433d">id</a> &&</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  protein_refs == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b">protein_refs</a> &&</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  evidence == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a6d12b8955b70824c3983632008b99fe0">evidence</a> &&</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  sequence == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a> &&</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  mods == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a71db591545de934990079a78b9ae0481">mods</a> &&</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  charge_ == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a> &&</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  peptide_group_label_ == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499">peptide_group_label_</a> &&</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  peptide_group_labels_ == rhs.<a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db">peptide_group_labels_</a>;</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  }</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa98f6d7f62328c34ff705d618d40a527"> 286</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa98f6d7f62328c34ff705d618d40a527">setChargeState</a>(<span class="keywordtype">int</span> charge)</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  {</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  charge_ = charge;</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  }</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> </div>
<div class="line"><a name="l00291"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f"> 291</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f">getChargeState</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <span class="keywordflow">return</span> charge_;</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  }</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span> </div>
<div class="line"><a name="l00296"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa340d259b540458620879a62e3dbc0df"> 296</a></span>  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa340d259b540458620879a62e3dbc0df">setPeptideGroupLabel</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & label)</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  {</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < peptide_group_labels_->size(); i++)</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  {</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  <span class="keywordflow">if</span> ((*peptide_group_labels_)[i] == label)</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  {</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  peptide_group_label_ = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>)i;</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  }</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  }</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> </div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="comment">// not found, add it to the list</span></div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  peptide_group_label_ = (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>)peptide_group_labels_->size();</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  peptide_group_labels_->push_back(label);</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  }</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span> </div>
<div class="line"><a name="l00312"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a9d2ba3a02210464e0436f63338b83ac2"> 312</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a9d2ba3a02210464e0436f63338b83ac2">getPeptideGroupLabel</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="keywordflow">if</span> (peptide_group_label_ == -1)</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  {</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordflow">return</span> <span class="stringliteral">""</span>;</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  }</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="keywordflow">return</span> (*peptide_group_labels_)[peptide_group_label_];</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> </div>
<div class="line"><a name="l00321"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a236983c133aa3347502fa64718ffe2f0"> 321</a></span>  <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a236983c133aa3347502fa64718ffe2f0">getRetentionTime</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="comment">// some guesstimate which would be the retention time that the user</span></div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="comment">// would like to have...</span></div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordflow">if</span> (rts.empty() || rts[0].getCVTerms()[<span class="stringliteral">"MS:1000896"</span>].empty())</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  {</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1IllegalArgument.html">Exception::IllegalArgument</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__,</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="stringliteral">"No retention time information (CV term 1000896) available"</span>);</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  }</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keywordflow">return</span> rts[0].getCVTerms()[<span class="stringliteral">"MS:1000896"</span>][0].getValue().toString().toDouble();</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  }</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span> </div>
<div class="line"><a name="l00333"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a04646756cfb9003cfa0fdbe7bafef165"> 333</a></span>  std::vector<RetentionTime> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a04646756cfb9003cfa0fdbe7bafef165">rts</a>;</div>
<div class="line"><a name="l00334"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a76010eef1edc0406cc2375c25d2a433d"> 334</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00335"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b"> 335</a></span>  std::vector<String> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b">protein_refs</a>;</div>
<div class="line"><a name="l00336"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a6d12b8955b70824c3983632008b99fe0"> 336</a></span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a6d12b8955b70824c3983632008b99fe0">evidence</a>;</div>
<div class="line"><a name="l00337"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a3d81a52752fe56b49914dbe273521b5d"> 337</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a3d81a52752fe56b49914dbe273521b5d">sequence</a>;</div>
<div class="line"><a name="l00338"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a71db591545de934990079a78b9ae0481"> 338</a></span>  std::vector<Modification> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a71db591545de934990079a78b9ae0481">mods</a>;</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> </div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00341"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ab74c9415a885a26680fbe1e2c304ca51"> 341</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a>;</div>
<div class="line"><a name="l00342"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499"> 342</a></span>  <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499">peptide_group_label_</a>;</div>
<div class="line"><a name="l00343"></a><span class="lineno"><a class="line" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db"> 343</a></span>  std::vector<String> * <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db">peptide_group_labels_</a>;</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  };</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span> </div>
<div class="line"><a name="l00346"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html"> 346</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a> :</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  {</div>
<div class="line"><a name="l00349"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a9e5d42b3d30874c9ffc3bb94608492da"> 349</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a9e5d42b3d30874c9ffc3bb94608492da">Contact</a>() :</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  {</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  }</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span> </div>
<div class="line"><a name="l00354"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a76010eef1edc0406cc2375c25d2a433d"> 354</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00356"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#abf7592c67796addd1626d6b697c86a68"> 356</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#abf7592c67796addd1626d6b697c86a68">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  }</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span> </div>
<div class="line"><a name="l00362"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#af8c373f85becff96a433bdea0126da00"> 362</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#af8c373f85becff96a433bdea0126da00">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a> & rhs)</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  {</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  {</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  }</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  }</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> </div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  };</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> </div>
<div class="line"><a name="l00374"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html"> 374</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a> :</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  {</div>
<div class="line"><a name="l00377"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a98332941d8b2d7e3a5febea17ab7dd5a"> 377</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a98332941d8b2d7e3a5febea17ab7dd5a">Publication</a>() :</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  {</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  }</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> </div>
<div class="line"><a name="l00382"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a76010eef1edc0406cc2375c25d2a433d"> 382</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> </div>
<div class="line"><a name="l00384"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#ad3c09aacc2042771060ab50e07b538a4"> 384</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#ad3c09aacc2042771060ab50e07b538a4">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  }</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span> </div>
<div class="line"><a name="l00390"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a938d06692bc115f5bacd962e5289f5e5"> 390</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a938d06692bc115f5bacd962e5289f5e5">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a> & rhs)</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  {</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  {</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  }</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  }</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span> </div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  };</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span> </div>
<div class="line"><a name="l00402"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html"> 402</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a> :</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  {</div>
<div class="line"><a name="l00405"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#af24aea89eec21b1caba7216b01bcb018"> 405</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#af24aea89eec21b1caba7216b01bcb018">Instrument</a>() :</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  {</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  }</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span> </div>
<div class="line"><a name="l00410"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a76010eef1edc0406cc2375c25d2a433d"> 410</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> </div>
<div class="line"><a name="l00412"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#ad69b04cd580062139c3fd7b5e20c0fb6"> 412</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#ad69b04cd580062139c3fd7b5e20c0fb6">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <span class="keywordtype">id</span> == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  }</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span> </div>
<div class="line"><a name="l00418"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a787735ecd19a0bf3bbf44d43e2c39074"> 418</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a787735ecd19a0bf3bbf44d43e2c39074">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a> & rhs)</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  {</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  {</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="keywordtype">id</span> = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a76010eef1edc0406cc2375c25d2a433d">id</a>;</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  }</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  }</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> </div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  };</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> </div>
<div class="line"><a name="l00430"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html"> 430</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a> :</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  {</div>
<div class="line"><a name="l00433"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a70840f97211401de3f953effbf4a3756"> 433</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a70840f97211401de3f953effbf4a3756">Prediction</a>() :</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  {</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  }</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span> </div>
<div class="line"><a name="l00438"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a2c4f51281e6fd6b4676ee60517b70694"> 438</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00439"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ad62d9f30c082718dc2f8a1f186b81e4f"> 439</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a>;</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span> </div>
<div class="line"><a name="l00441"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ae3d1ea61709eff1c28c1c047f86b96c4"> 441</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ae3d1ea61709eff1c28c1c047f86b96c4">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  contact_ref == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a> &&</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  software_ref == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  }</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span> </div>
<div class="line"><a name="l00448"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a869bc9f780826b244b0f3413f1282e26"> 448</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a869bc9f780826b244b0f3413f1282e26">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a> & rhs)</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  {</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  {</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  software_ref = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a2c4f51281e6fd6b4676ee60517b70694">software_ref</a>;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  contact_ref = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ad62d9f30c082718dc2f8a1f186b81e4f">contact_ref</a>;</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  }</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  }</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span> </div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  };</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span> </div>
<div class="line"><a name="l00461"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html"> 461</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a> :</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a></div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  {</div>
<div class="line"><a name="l00464"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a231a5673a2ce1794570d0720f4d0273b"> 464</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a231a5673a2ce1794570d0720f4d0273b">TraMLProduct</a>() :</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a>()</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  {</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  charge_ = -1;</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  }</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span> </div>
<div class="line"><a name="l00470"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a79c5549f8d32d981c23bad4d0e519c0c"> 470</a></span>  <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a79c5549f8d32d981c23bad4d0e519c0c">operator==</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a> & rhs)<span class="keyword"> const</span></div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keywordflow">return</span> <a class="code" href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">CVTermList::operator==</a>(rhs) &&</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  charge_ == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a> &&</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  configuration_list_ == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab0f85401a09a1f12f35c3de1d5029c92">configuration_list_</a> &&</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  interpretation_list_ == rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a3c4eb8f305518c097185c42e75aec3db">interpretation_list_</a>;</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  }</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span> </div>
<div class="line"><a name="l00478"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#acba38cc72dab0b645b478cdeb28d5533"> 478</a></span>  <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#acba38cc72dab0b645b478cdeb28d5533">operator=</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a> & rhs)</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  {</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  <span class="keywordflow">if</span> (&rhs != <span class="keyword">this</span>)</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  {</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  <a class="code" href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">CVTermList::operator=</a>(rhs);</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  charge_ = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a>;</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  configuration_list_ = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab0f85401a09a1f12f35c3de1d5029c92">configuration_list_</a>;</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  interpretation_list_ = rhs.<a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a3c4eb8f305518c097185c42e75aec3db">interpretation_list_</a>;</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  }</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  }</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span> </div>
<div class="line"><a name="l00490"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#aa98f6d7f62328c34ff705d618d40a527"> 490</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#aa98f6d7f62328c34ff705d618d40a527">setChargeState</a>(<span class="keywordtype">int</span> charge)</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  {</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  charge_ = charge;</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  }</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span> </div>
<div class="line"><a name="l00495"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a49ce0caa2ae22c1439eaf0fd861bf37f"> 495</a></span>  <span class="keywordtype">int</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a49ce0caa2ae22c1439eaf0fd861bf37f">getChargeState</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <span class="keywordflow">return</span> charge_;</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  }</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span> </div>
<div class="line"><a name="l00500"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#accd9011e6bbb074e36e5d4fdaaeaaa54"> 500</a></span>  <span class="keyword">const</span> std::vector<Configuration> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#accd9011e6bbb074e36e5d4fdaaeaaa54">getConfigurationList</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  <span class="keywordflow">return</span> configuration_list_;</div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  }</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span> </div>
<div class="line"><a name="l00505"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a8917b2af9acc35d3776531949dcafd37"> 505</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a8917b2af9acc35d3776531949dcafd37">addConfiguration</a>(<span class="keyword">const</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a> configuration)</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  {</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  <span class="keywordflow">return</span> configuration_list_.push_back(configuration);</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  }</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span> </div>
<div class="line"><a name="l00510"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a801719fb539d7e84a7435dc2dcffc2e2"> 510</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a801719fb539d7e84a7435dc2dcffc2e2">replaceCVTerms</a>(<a class="code" href="classOpenMS_1_1Map.html">Map</a><<a class="code" href="classOpenMS_1_1String.html">String</a>, std::vector<CVTerm> > & cv_terms)</div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  {</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  cv_terms_ = cv_terms;</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  }</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span> </div>
<div class="line"><a name="l00515"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a69a30ce0de17f4c64f61acb14ed2dada"> 515</a></span>  <span class="keyword">const</span> std::vector<CVTermList> & <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a69a30ce0de17f4c64f61acb14ed2dada">getInterpretationList</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">return</span> interpretation_list_;</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  }</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a name="l00520"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#abc303192a66dafadb680dd673921b59c"> 520</a></span>  <span class="keywordtype">void</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#abc303192a66dafadb680dd673921b59c">addInterpretation</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1CVTermList.html">CVTermList</a> interpretation)</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  {</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  <span class="keywordflow">return</span> interpretation_list_.push_back(interpretation);</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  }</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span> </div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00526"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab74c9415a885a26680fbe1e2c304ca51"> 526</a></span>  <span class="keywordtype">int</span> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab74c9415a885a26680fbe1e2c304ca51">charge_</a>;</div>
<div class="line"><a name="l00527"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab0f85401a09a1f12f35c3de1d5029c92"> 527</a></span>  std::vector<Configuration> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab0f85401a09a1f12f35c3de1d5029c92">configuration_list_</a>;</div>
<div class="line"><a name="l00528"></a><span class="lineno"><a class="line" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a3c4eb8f305518c097185c42e75aec3db"> 528</a></span>  std::vector<CVTermList> <a class="code" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a3c4eb8f305518c097185c42e75aec3db">interpretation_list_</a>;</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span> </div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  };</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span> </div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> <a class="code" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#ab235a14eca5a54244a08b3e10a180e6f">getAASequence</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a>& peptide);</div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> </div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#af43c41475ceea0dc1fa07f4957c816e7">setModification</a>(<span class="keywordtype">int</span> location, <span class="keywordtype">int</span> max_size, <a class="code" href="classOpenMS_1_1String.html">String</a> modification, <a class="code" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> & aas);</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span> </div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  }</div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span> </div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span> <span class="preprocessor">#endif // OPENMS_ANALYSIS_TARGETED_TARGETEDEXPERIMENTHELPER_H</span></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a8917b2af9acc35d3776531949dcafd37"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a8917b2af9acc35d3776531949dcafd37">OpenMS::TargetedExperimentHelper::TraMLProduct::addConfiguration</a></div><div class="ttdeci">void addConfiguration(const Configuration configuration)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:505</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_ad680a5cf07955d6cb2c377af9938a36a"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ad680a5cf07955d6cb2c377af9938a36a">OpenMS::TargetedExperimentHelper::Peptide::Peptide</a></div><div class="ttdeci">Peptide(const Peptide &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:240</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Contact_html_abf7592c67796addd1626d6b697c86a68"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#abf7592c67796addd1626d6b697c86a68">OpenMS::TargetedExperimentHelper::Contact::operator==</a></div><div class="ttdeci">bool operator==(const Contact &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:356</div></div>
<div class="ttc" id="CVTermList_8h_html"><div class="ttname"><a href="CVTermList_8h.html">CVTermList.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_a4854e82c2bb86ae4dc2ca0d09f8b26d2"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a4854e82c2bb86ae4dc2ca0d09f8b26d2">OpenMS::TargetedExperimentHelper::RetentionTime::~RetentionTime</a></div><div class="ttdeci">virtual ~RetentionTime()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:149</div></div>
<div class="ttc" id="StandardTypes_8h_html"><div class="ttname"><a href="StandardTypes_8h.html">StandardTypes.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a6d12b8955b70824c3983632008b99fe0"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a6d12b8955b70824c3983632008b99fe0">OpenMS::TargetedExperimentHelper::Peptide::evidence</a></div><div class="ttdeci">CVTermList evidence</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:336</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html_ae93fd9f5bc61a9d7b6d9b45ccfb27cfb"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#ae93fd9f5bc61a9d7b6d9b45ccfb27cfb">OpenMS::TargetedExperimentHelper::Protein::operator=</a></div><div class="ttdeci">Protein & operator=(const Protein &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:120</div></div>
<div class="ttc" id="classOpenMS_1_1CVTermList_html"><div class="ttname"><a href="classOpenMS_1_1CVTermList.html">OpenMS::CVTermList</a></div><div class="ttdoc">Representation of controlled vocabulary term list. </div><div class="ttdef"><b>Definition:</b> CVTermList.h:54</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_aa98f6d7f62328c34ff705d618d40a527"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#aa98f6d7f62328c34ff705d618d40a527">OpenMS::TargetedExperimentHelper::TraMLProduct::setChargeState</a></div><div class="ttdeci">void setChargeState(int charge)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:490</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_ac4561b4dc4cd2fae8270175fb182b5df"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ac4561b4dc4cd2fae8270175fb182b5df">OpenMS::TargetedExperimentHelper::Compound::operator=</a></div><div class="ttdeci">Compound & operator=(const Compound &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:189</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration_html_aae1ab13aa03b2a3c786f8738a6f448e5"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aae1ab13aa03b2a3c786f8738a6f448e5">OpenMS::TargetedExperimentHelper::Configuration::operator=</a></div><div class="ttdeci">Configuration & operator=(const Configuration &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:62</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification_html_a7bbce2c7450610bda61793f7dd12ceed"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a7bbce2c7450610bda61793f7dd12ceed">OpenMS::TargetedExperimentHelper::Peptide::Modification::location</a></div><div class="ttdeci">int location</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:220</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Contact_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Contact::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:354</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_aefe191136f8809d91a05836765908d0f"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aefe191136f8809d91a05836765908d0f">OpenMS::TargetedExperimentHelper::CV::URI</a></div><div class="ttdeci">String URI</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:90</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_accd9011e6bbb074e36e5d4fdaaeaaa54"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#accd9011e6bbb074e36e5d4fdaaeaaa54">OpenMS::TargetedExperimentHelper::TraMLProduct::getConfigurationList</a></div><div class="ttdeci">const std::vector< Configuration > & getConfigurationList() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:500</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Publication_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">OpenMS::TargetedExperimentHelper::Publication</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:374</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_aca20a707cf7e21040512c429edc78a3d"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aca20a707cf7e21040512c429edc78a3d">OpenMS::TargetedExperimentHelper::Compound::Compound</a></div><div class="ttdeci">Compound()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:177</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration_html_a27eeff90c8601b96e8c11d1468eada08"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#a27eeff90c8601b96e8c11d1468eada08">OpenMS::TargetedExperimentHelper::Configuration::instrument_ref</a></div><div class="ttdeci">String instrument_ref</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:59</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html_a2c4f51281e6fd6b4676ee60517b70694"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a2c4f51281e6fd6b4676ee60517b70694">OpenMS::TargetedExperimentHelper::Prediction::software_ref</a></div><div class="ttdeci">String software_ref</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:438</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_acba38cc72dab0b645b478cdeb28d5533"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#acba38cc72dab0b645b478cdeb28d5533">OpenMS::TargetedExperimentHelper::TraMLProduct::operator=</a></div><div class="ttdeci">TraMLProduct & operator=(const TraMLProduct &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:478</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a3c4eb8f305518c097185c42e75aec3db"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a3c4eb8f305518c097185c42e75aec3db">OpenMS::TargetedExperimentHelper::TraMLProduct::interpretation_list_</a></div><div class="ttdeci">std::vector< CVTermList > interpretation_list_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:528</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html_a869bc9f780826b244b0f3413f1282e26"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a869bc9f780826b244b0f3413f1282e26">OpenMS::TargetedExperimentHelper::Prediction::operator=</a></div><div class="ttdeci">Prediction & operator=(const Prediction &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:448</div></div>
<div class="ttc" id="namespaceOpenMS_1_1TargetedExperimentHelper_html_ab235a14eca5a54244a08b3e10a180e6f"><div class="ttname"><a href="namespaceOpenMS_1_1TargetedExperimentHelper.html#ab235a14eca5a54244a08b3e10a180e6f">OpenMS::TargetedExperimentHelper::getAASequence</a></div><div class="ttdeci">OpenMS::AASequence getAASequence(const Peptide &peptide)</div><div class="ttdoc">helper function that converts a Peptide object to a AASequence object </div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a9d2ba3a02210464e0436f63338b83ac2"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a9d2ba3a02210464e0436f63338b83ac2">OpenMS::TargetedExperimentHelper::Peptide::getPeptideGroupLabel</a></div><div class="ttdeci">String getPeptideGroupLabel() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:312</div></div>
<div class="ttc" id="classOpenMS_1_1AASequence_html"><div class="ttname"><a href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a></div><div class="ttdoc">Representation of a peptide/protein sequence. </div><div class="ttdef"><b>Definition:</b> AASequence.h:84</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_a5fcd9aee21d8ff3e48cd161e42d25098"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a5fcd9aee21d8ff3e48cd161e42d25098">OpenMS::TargetedExperimentHelper::CV::fullname</a></div><div class="ttdeci">String fullname</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:88</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_af3d98c49f2fc25f60fc4156aa5b01df6"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#af3d98c49f2fc25f60fc4156aa5b01df6">OpenMS::TargetedExperimentHelper::Peptide::operator=</a></div><div class="ttdeci">Peptide & operator=(const Peptide &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:254</div></div>
<div class="ttc" id="classOpenMS_1_1CVTermList_html_aa510cd8682de2c4178a25483b7d2cd5d"><div class="ttname"><a href="classOpenMS_1_1CVTermList.html#aa510cd8682de2c4178a25483b7d2cd5d">OpenMS::CVTermList::operator=</a></div><div class="ttdeci">CVTermList & operator=(const CVTermList &rhs)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument_html_ad69b04cd580062139c3fd7b5e20c0fb6"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#ad69b04cd580062139c3fd7b5e20c0fb6">OpenMS::TargetedExperimentHelper::Instrument::operator==</a></div><div class="ttdeci">bool operator==(const Instrument &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:412</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Contact_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">OpenMS::TargetedExperimentHelper::Contact</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:346</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a7d911367a452ea5ebf0d0191fdff15db"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db">OpenMS::TargetedExperimentHelper::Peptide::peptide_group_labels_</a></div><div class="ttdeci">std::vector< String > * peptide_group_labels_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:343</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Contact_html_af8c373f85becff96a433bdea0126da00"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#af8c373f85becff96a433bdea0126da00">OpenMS::TargetedExperimentHelper::Contact::operator=</a></div><div class="ttdeci">Contact & operator=(const Contact &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:362</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_abc303192a66dafadb680dd673921b59c"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#abc303192a66dafadb680dd673921b59c">OpenMS::TargetedExperimentHelper::TraMLProduct::addInterpretation</a></div><div class="ttdeci">void addInterpretation(const CVTermList interpretation)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:520</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a231a5673a2ce1794570d0720f4d0273b"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a231a5673a2ce1794570d0720f4d0273b">OpenMS::TargetedExperimentHelper::TraMLProduct::TraMLProduct</a></div><div class="ttdeci">TraMLProduct()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:464</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_aa18c13e9945fd4e877017f69bdaad1af"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aa18c13e9945fd4e877017f69bdaad1af">OpenMS::TargetedExperimentHelper::CV::CV</a></div><div class="ttdeci">CV(const String &new_id, const String &new_fullname, const String &new_version, const String &new_URI)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:78</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a49ce0caa2ae22c1439eaf0fd861bf37f"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f">OpenMS::TargetedExperimentHelper::Peptide::getChargeState</a></div><div class="ttdeci">int getChargeState() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:291</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_ab0f85401a09a1f12f35c3de1d5029c92"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab0f85401a09a1f12f35c3de1d5029c92">OpenMS::TargetedExperimentHelper::TraMLProduct::configuration_list_</a></div><div class="ttdeci">std::vector< Configuration > configuration_list_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:527</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_aab3bc2c27daa4d3de4952f50cb97c392"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#aab3bc2c27daa4d3de4952f50cb97c392">OpenMS::TargetedExperimentHelper::RetentionTime::operator=</a></div><div class="ttdeci">RetentionTime & operator=(const RetentionTime &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:153</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a04646756cfb9003cfa0fdbe7bafef165"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a04646756cfb9003cfa0fdbe7bafef165">OpenMS::TargetedExperimentHelper::Peptide::rts</a></div><div class="ttdeci">std::vector< RetentionTime > rts</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:333</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_a04646756cfb9003cfa0fdbe7bafef165"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a04646756cfb9003cfa0fdbe7bafef165">OpenMS::TargetedExperimentHelper::Compound::rts</a></div><div class="ttdeci">std::vector< RetentionTime > rts</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:208</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a2a1148f0758cc3243a132589714555b0"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">OpenMS::TargetedExperimentHelper::Peptide::Peptide</a></div><div class="ttdeci">Peptide()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:224</div></div>
<div class="ttc" id="namespaceOpenMS_1_1TargetedExperimentHelper_html_af43c41475ceea0dc1fa07f4957c816e7"><div class="ttname"><a href="namespaceOpenMS_1_1TargetedExperimentHelper.html#af43c41475ceea0dc1fa07f4957c816e7">OpenMS::TargetedExperimentHelper::setModification</a></div><div class="ttdeci">void setModification(int location, int max_size, String modification, OpenMS::AASequence &aas)</div><div class="ttdoc">helper function that sets a modifiction on a AASequence object </div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html_a928c956fd48fac5349a5d34b1e09ee65"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a928c956fd48fac5349a5d34b1e09ee65">OpenMS::TargetedExperimentHelper::Protein::Protein</a></div><div class="ttdeci">Protein()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:105</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1IllegalArgument_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1IllegalArgument.html">OpenMS::Exception::IllegalArgument</a></div><div class="ttdoc">A method or algorithm argument contains illegal values. </div><div class="ttdef"><b>Definition:</b> Exception.h:634</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_ab74c9415a885a26680fbe1e2c304ca51"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#ab74c9415a885a26680fbe1e2c304ca51">OpenMS::TargetedExperimentHelper::Peptide::charge_</a></div><div class="ttdeci">int charge_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:341</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html_a208edec3929178af163d811f930511fb"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a208edec3929178af163d811f930511fb">OpenMS::TargetedExperimentHelper::Protein::operator==</a></div><div class="ttdeci">bool operator==(const Protein &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:113</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">OpenMS::TargetedExperimentHelper::Configuration</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:55</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration_html_aca7cd7aa8928bc47d577c6e77faedebf"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#aca7cd7aa8928bc47d577c6e77faedebf">OpenMS::TargetedExperimentHelper::Configuration::validations</a></div><div class="ttdeci">std::vector< CVTermList > validations</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Peptide::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:334</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">OpenMS::TargetedExperimentHelper::TraMLProduct</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:461</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument_html_af24aea89eec21b1caba7216b01bcb018"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#af24aea89eec21b1caba7216b01bcb018">OpenMS::TargetedExperimentHelper::Instrument::Instrument</a></div><div class="ttdeci">Instrument()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:405</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a801719fb539d7e84a7435dc2dcffc2e2"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a801719fb539d7e84a7435dc2dcffc2e2">OpenMS::TargetedExperimentHelper::TraMLProduct::replaceCVTerms</a></div><div class="ttdeci">void replaceCVTerms(Map< String, std::vector< CVTerm > > &cv_terms)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:510</div></div>
<div class="ttc" id="classOpenMS_1_1CVTermList_html_a209fd2d7911a2433bd62307539137c4e"><div class="ttname"><a href="classOpenMS_1_1CVTermList.html#a209fd2d7911a2433bd62307539137c4e">OpenMS::CVTermList::operator==</a></div><div class="ttdeci">bool operator==(const CVTermList &cv_term_list) const </div><div class="ttdoc">equality operator </div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument_html_a787735ecd19a0bf3bbf44d43e2c39074"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a787735ecd19a0bf3bbf44d43e2c39074">OpenMS::TargetedExperimentHelper::Instrument::operator=</a></div><div class="ttdeci">Instrument & operator=(const Instrument &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:418</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a1e481b16e0d9e15e23b44c5f9d5cd499"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499">OpenMS::TargetedExperimentHelper::Peptide::peptide_group_label_</a></div><div class="ttdeci">Int peptide_group_label_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:342</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::CV::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:87</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html_ad62d9f30c082718dc2f8a1f186b81e4f"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ad62d9f30c082718dc2f8a1f186b81e4f">OpenMS::TargetedExperimentHelper::Prediction::contact_ref</a></div><div class="ttdeci">String contact_ref</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:439</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Publication_html_a938d06692bc115f5bacd962e5289f5e5"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a938d06692bc115f5bacd962e5289f5e5">OpenMS::TargetedExperimentHelper::Publication::operator=</a></div><div class="ttdeci">Publication & operator=(const Publication &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:390</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html_a3d81a52752fe56b49914dbe273521b5d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a3d81a52752fe56b49914dbe273521b5d">OpenMS::TargetedExperimentHelper::Protein::sequence</a></div><div class="ttdeci">String sequence</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_a68ee66e5ca82ec8ba9c2c85326da91cf"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a68ee66e5ca82ec8ba9c2c85326da91cf">OpenMS::TargetedExperimentHelper::RetentionTime::RetentionTime</a></div><div class="ttdeci">RetentionTime()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:138</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_ac6c3998d62daee33db4a868ca568d418"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#ac6c3998d62daee33db4a868ca568d418">OpenMS::TargetedExperimentHelper::RetentionTime::operator==</a></div><div class="ttdeci">bool operator==(const RetentionTime &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:163</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">OpenMS::TargetedExperimentHelper::Compound</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:172</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a71db591545de934990079a78b9ae0481"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a71db591545de934990079a78b9ae0481">OpenMS::TargetedExperimentHelper::Peptide::mods</a></div><div class="ttdeci">std::vector< Modification > mods</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:338</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a740a58e746765ad598b60eeab9124b8b"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b">OpenMS::TargetedExperimentHelper::Peptide::protein_refs</a></div><div class="ttdeci">std::vector< String > protein_refs</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:335</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_aa98f6d7f62328c34ff705d618d40a527"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa98f6d7f62328c34ff705d618d40a527">OpenMS::TargetedExperimentHelper::Peptide::setChargeState</a></div><div class="ttdeci">void setChargeState(int charge)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:286</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Publication_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Publication::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:382</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html_a70840f97211401de3f953effbf4a3756"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a70840f97211401de3f953effbf4a3756">OpenMS::TargetedExperimentHelper::Prediction::Prediction</a></div><div class="ttdeci">Prediction()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:433</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html">OpenMS::TargetedExperimentHelper::CV</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:76</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_aa340d259b540458620879a62e3dbc0df"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa340d259b540458620879a62e3dbc0df">OpenMS::TargetedExperimentHelper::Peptide::setPeptideGroupLabel</a></div><div class="ttdeci">void setPeptideGroupLabel(const String &label)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:296</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a3d81a52752fe56b49914dbe273521b5d"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a3d81a52752fe56b49914dbe273521b5d">OpenMS::TargetedExperimentHelper::Peptide::sequence</a></div><div class="ttdeci">String sequence</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:337</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html">OpenMS::TargetedExperimentHelper::Peptide::Modification</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:216</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_a2018605693c72cc9946330807580722c"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a2018605693c72cc9946330807580722c">OpenMS::TargetedExperimentHelper::CV::operator==</a></div><div class="ttdeci">bool operator==(const CV &cv) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:92</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Protein::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:110</div></div>
<div class="ttc" id="CVTerm_8h_html"><div class="ttname"><a href="CVTerm_8h.html">CVTerm.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a49ce0caa2ae22c1439eaf0fd861bf37f"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a49ce0caa2ae22c1439eaf0fd861bf37f">OpenMS::TargetedExperimentHelper::TraMLProduct::getChargeState</a></div><div class="ttdeci">int getChargeState() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:495</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Publication_html_ad3c09aacc2042771060ab50e07b538a4"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#ad3c09aacc2042771060ab50e07b538a4">OpenMS::TargetedExperimentHelper::Publication::operator==</a></div><div class="ttdeci">bool operator==(const Publication &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:384</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_a6a3cc00b5223e2eb652d65c8e87015cc"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a6a3cc00b5223e2eb652d65c8e87015cc">OpenMS::TargetedExperimentHelper::RetentionTime::RetentionTime</a></div><div class="ttdeci">RetentionTime(const RetentionTime &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:143</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">OpenMS::TargetedExperimentHelper::Instrument</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:402</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Compound::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:207</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">OpenMS::TargetedExperimentHelper::RetentionTime</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:133</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument_html_a76010eef1edc0406cc2375c25d2a433d"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html#a76010eef1edc0406cc2375c25d2a433d">OpenMS::TargetedExperimentHelper::Instrument::id</a></div><div class="ttdeci">String id</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:410</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">OpenMS::TargetedExperimentHelper::Prediction</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:430</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Protein_html"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">OpenMS::TargetedExperimentHelper::Protein</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:102</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration_html_ad62d9f30c082718dc2f8a1f186b81e4f"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html#ad62d9f30c082718dc2f8a1f186b81e4f">OpenMS::TargetedExperimentHelper::Configuration::contact_ref</a></div><div class="ttdeci">String contact_ref</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_ab126d4ff8c4dddce407ef6d22b830f02"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#ab126d4ff8c4dddce407ef6d22b830f02">OpenMS::TargetedExperimentHelper::Compound::operator==</a></div><div class="ttdeci">bool operator==(const Compound &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:200</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification_html_a71b99cef64e5eb96df9a24b5a600512f"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a71b99cef64e5eb96df9a24b5a600512f">OpenMS::TargetedExperimentHelper::Peptide::Modification::mono_mass_delta</a></div><div class="ttdeci">DoubleReal mono_mass_delta</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:221</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification_html_a36e96373c998fc068aabfa436c6ce8e4"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a36e96373c998fc068aabfa436c6ce8e4">OpenMS::TargetedExperimentHelper::Peptide::Modification::avg_mass_delta</a></div><div class="ttdeci">DoubleReal avg_mass_delta</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:219</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime_html_a2c4f51281e6fd6b4676ee60517b70694"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html#a2c4f51281e6fd6b4676ee60517b70694">OpenMS::TargetedExperimentHelper::RetentionTime::software_ref</a></div><div class="ttdeci">String software_ref</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:169</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction_html_ae3d1ea61709eff1c28c1c047f86b96c4"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#ae3d1ea61709eff1c28c1c047f86b96c4">OpenMS::TargetedExperimentHelper::Prediction::operator==</a></div><div class="ttdeci">bool operator==(const Prediction &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:441</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a236983c133aa3347502fa64718ffe2f0"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a236983c133aa3347502fa64718ffe2f0">OpenMS::TargetedExperimentHelper::Peptide::getRetentionTime</a></div><div class="ttdeci">double getRetentionTime() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:321</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Compound_html_aa6eebaa3b617127f750eb77fdd9db107"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aa6eebaa3b617127f750eb77fdd9db107">OpenMS::TargetedExperimentHelper::Compound::Compound</a></div><div class="ttdeci">Compound(const Compound &rhs)</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map</a></div><div class="ttdoc">Map class based on the STL map (containing serveral convenience functions) </div><div class="ttdef"><b>Definition:</b> Map.h:50</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Publication_html_a98332941d8b2d7e3a5febea17ab7dd5a"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a98332941d8b2d7e3a5febea17ab7dd5a">OpenMS::TargetedExperimentHelper::Publication::Publication</a></div><div class="ttdeci">Publication()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:377</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1CV_html_a647cd1252795280f192c7eefbde080e0"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#a647cd1252795280f192c7eefbde080e0">OpenMS::TargetedExperimentHelper::CV::version</a></div><div class="ttdeci">String version</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:89</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a79c5549f8d32d981c23bad4d0e519c0c"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a79c5549f8d32d981c23bad4d0e519c0c">OpenMS::TargetedExperimentHelper::TraMLProduct::operator==</a></div><div class="ttdeci">bool operator==(const TraMLProduct &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:470</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html_a4e89a04d22bd2ad152f40424bea32ae4"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a4e89a04d22bd2ad152f40424bea32ae4">OpenMS::TargetedExperimentHelper::Peptide::operator==</a></div><div class="ttdeci">bool operator==(const Peptide &rhs) const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:272</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_ab74c9415a885a26680fbe1e2c304ca51"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#ab74c9415a885a26680fbe1e2c304ca51">OpenMS::TargetedExperimentHelper::TraMLProduct::charge_</a></div><div class="ttdeci">int charge_</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:526</div></div>
<div class="ttc" id="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide_html"><div class="ttname"><a href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">OpenMS::TargetedExperimentHelper::Peptide</a></div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:211</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1Contact_html_a9e5d42b3d30874c9ffc3bb94608492da"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a9e5d42b3d30874c9ffc3bb94608492da">OpenMS::TargetedExperimentHelper::Contact::Contact</a></div><div class="ttdeci">Contact()</div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:349</div></div>
<div class="ttc" id="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct_html_a69a30ce0de17f4c64f61acb14ed2dada"><div class="ttname"><a href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a69a30ce0de17f4c64f61acb14ed2dada">OpenMS::TargetedExperimentHelper::TraMLProduct::getInterpretationList</a></div><div class="ttdeci">const std::vector< CVTermList > & getInterpretationList() const </div><div class="ttdef"><b>Definition:</b> TargetedExperimentHelper.h:515</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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