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<a href="Transitions_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Hannes Roest $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Hannes Roest $</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="keyword">namespace </span>OpenSwath</div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;{</div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html">   41</a></span>&#160;  <span class="keyword">struct </span>OPENSWATHALGO_DLLAPI <a class="code" href="structOpenSwath_1_1Peptide.html">Peptide</a></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;  {</div>
<div class="line"><a name="l00043"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#ae5ee906bf451a6150d80754f4068dc58">   43</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="structOpenSwath_1_1Peptide.html#ae5ee906bf451a6150d80754f4068dc58">rt</a>;</div>
<div class="line"><a name="l00044"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#ae8b866d74c9f0b8464b1aee9788c04eb">   44</a></span>&#160;    <span class="keywordtype">int</span> <a class="code" href="structOpenSwath_1_1Peptide.html#ae8b866d74c9f0b8464b1aee9788c04eb">charge</a>;</div>
<div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">   45</a></span>&#160;    std::string <a class="code" href="structOpenSwath_1_1Peptide.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">sequence</a>;</div>
<div class="line"><a name="l00046"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#afd0d68c6d31ff249f3ae8662162663c3">   46</a></span>&#160;    std::string <a class="code" href="structOpenSwath_1_1Peptide.html#afd0d68c6d31ff249f3ae8662162663c3">id</a>;</div>
<div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f">   47</a></span>&#160;    <span class="keywordtype">int</span> <a class="code" href="structOpenSwath_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f">getChargeState</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;      <span class="keywordflow">return</span> charge;</div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;    }</div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;</div>
<div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#a85c560f46e04c844caf5a1677f61e211">   52</a></span>&#160;    std::vector&lt;LightModification&gt; <a class="code" href="structOpenSwath_1_1Peptide.html#a85c560f46e04c844caf5a1677f61e211">modifications</a>;</div>
<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Peptide.html#a156078a225dd305fe94b30f818c21f05">   53</a></span>&#160;    std::vector&lt;LightTransition&gt; <a class="code" href="structOpenSwath_1_1Peptide.html#a156078a225dd305fe94b30f818c21f05">transitions</a>;</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;  };</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div>
<div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Protein.html">   56</a></span>&#160;  <span class="keyword">struct </span>OPENSWATHALGO_DLLAPI <a class="code" href="structOpenSwath_1_1Protein.html">Protein</a></div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;  {</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Protein.html#afd0d68c6d31ff249f3ae8662162663c3">   58</a></span>&#160;    std::string <a class="code" href="structOpenSwath_1_1Protein.html#afd0d68c6d31ff249f3ae8662162663c3">id</a>;</div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Protein.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">   59</a></span>&#160;    std::string <a class="code" href="structOpenSwath_1_1Protein.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">sequence</a>;</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1Protein.html#a7d65b1dcc645645ce5a480c3205ad2a9">   60</a></span>&#160;    std::vector&lt;Peptide&gt; <a class="code" href="structOpenSwath_1_1Protein.html#a7d65b1dcc645645ce5a480c3205ad2a9">peptides</a>;</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;  };</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;</div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1TargetedExperiment.html">   63</a></span>&#160;  <span class="keyword">struct </span>OPENSWATHALGO_DLLAPI <a class="code" href="structOpenSwath_1_1TargetedExperiment.html">TargetedExperiment</a></div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;  {</div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="structOpenSwath_1_1TargetedExperiment.html#a4859a22cc0ef3a90d082ea9518b6ff68">   65</a></span>&#160;    std::vector&lt;Protein&gt; <a class="code" href="structOpenSwath_1_1TargetedExperiment.html#a4859a22cc0ef3a90d082ea9518b6ff68">proteins</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;  };</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;}</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;<span class="preprocessor">#endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H</span></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_a85c560f46e04c844caf5a1677f61e211"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#a85c560f46e04c844caf5a1677f61e211">OpenSwath::Peptide::modifications</a></div><div class="ttdeci">std::vector&lt; LightModification &gt; modifications</div><div class="ttdef"><b>Definition:</b> Transitions.h:52</div></div>
<div class="ttc" id="structOpenSwath_1_1Protein_html_a7d65b1dcc645645ce5a480c3205ad2a9"><div class="ttname"><a href="structOpenSwath_1_1Protein.html#a7d65b1dcc645645ce5a480c3205ad2a9">OpenSwath::Protein::peptides</a></div><div class="ttdeci">std::vector&lt; Peptide &gt; peptides</div><div class="ttdef"><b>Definition:</b> Transitions.h:60</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html">OpenSwath::Peptide</a></div><div class="ttdef"><b>Definition:</b> Transitions.h:41</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_ae5ee906bf451a6150d80754f4068dc58"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#ae5ee906bf451a6150d80754f4068dc58">OpenSwath::Peptide::rt</a></div><div class="ttdeci">double rt</div><div class="ttdef"><b>Definition:</b> Transitions.h:43</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_a156078a225dd305fe94b30f818c21f05"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#a156078a225dd305fe94b30f818c21f05">OpenSwath::Peptide::transitions</a></div><div class="ttdeci">std::vector&lt; LightTransition &gt; transitions</div><div class="ttdef"><b>Definition:</b> Transitions.h:53</div></div>
<div class="ttc" id="structOpenSwath_1_1TargetedExperiment_html_a4859a22cc0ef3a90d082ea9518b6ff68"><div class="ttname"><a href="structOpenSwath_1_1TargetedExperiment.html#a4859a22cc0ef3a90d082ea9518b6ff68">OpenSwath::TargetedExperiment::proteins</a></div><div class="ttdeci">std::vector&lt; Protein &gt; proteins</div><div class="ttdef"><b>Definition:</b> Transitions.h:65</div></div>
<div class="ttc" id="structOpenSwath_1_1Protein_html_a9a2b94a2b0e3195ef7ea3a13187c17b9"><div class="ttname"><a href="structOpenSwath_1_1Protein.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">OpenSwath::Protein::sequence</a></div><div class="ttdeci">std::string sequence</div><div class="ttdef"><b>Definition:</b> Transitions.h:59</div></div>
<div class="ttc" id="structOpenSwath_1_1Protein_html"><div class="ttname"><a href="structOpenSwath_1_1Protein.html">OpenSwath::Protein</a></div><div class="ttdef"><b>Definition:</b> Transitions.h:56</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_a49ce0caa2ae22c1439eaf0fd861bf37f"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#a49ce0caa2ae22c1439eaf0fd861bf37f">OpenSwath::Peptide::getChargeState</a></div><div class="ttdeci">int getChargeState() const </div><div class="ttdef"><b>Definition:</b> Transitions.h:47</div></div>
<div class="ttc" id="structOpenSwath_1_1Protein_html_afd0d68c6d31ff249f3ae8662162663c3"><div class="ttname"><a href="structOpenSwath_1_1Protein.html#afd0d68c6d31ff249f3ae8662162663c3">OpenSwath::Protein::id</a></div><div class="ttdeci">std::string id</div><div class="ttdef"><b>Definition:</b> Transitions.h:58</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_afd0d68c6d31ff249f3ae8662162663c3"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#afd0d68c6d31ff249f3ae8662162663c3">OpenSwath::Peptide::id</a></div><div class="ttdeci">std::string id</div><div class="ttdef"><b>Definition:</b> Transitions.h:46</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_a9a2b94a2b0e3195ef7ea3a13187c17b9"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#a9a2b94a2b0e3195ef7ea3a13187c17b9">OpenSwath::Peptide::sequence</a></div><div class="ttdeci">std::string sequence</div><div class="ttdef"><b>Definition:</b> Transitions.h:45</div></div>
<div class="ttc" id="structOpenSwath_1_1Peptide_html_ae8b866d74c9f0b8464b1aee9788c04eb"><div class="ttname"><a href="structOpenSwath_1_1Peptide.html#ae8b866d74c9f0b8464b1aee9788c04eb">OpenSwath::Peptide::charge</a></div><div class="ttdeci">int charge</div><div class="ttdef"><b>Definition:</b> Transitions.h:44</div></div>
<div class="ttc" id="structOpenSwath_1_1TargetedExperiment_html"><div class="ttname"><a href="structOpenSwath_1_1TargetedExperiment.html">OpenSwath::TargetedExperiment</a></div><div class="ttdef"><b>Definition:</b> Transitions.h:63</div></div>
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