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<a href="UniqueIdIndexer_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Chris Bielow $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Clemens Groepl $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_CONCEPT_UNIQUEIDINDEXER_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_CONCEPT_UNIQUEIDINDEXER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="UniqueIdInterface_8h.html">OpenMS/CONCEPT/UniqueIdInterface.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="LogStream_8h.html">OpenMS/CONCEPT/LogStream.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#ifdef _MSC_VER // disable some BOOST warnings that distract from ours</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#   pragma warning( push ) // save warning state</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#   pragma warning( disable : 4396 )</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#include &lt;boost/unordered_map.hpp&gt;</span></div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="preprocessor">#ifdef _MSC_VER</span></div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#   pragma warning( pop )  // restore old warning state</span></div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;</div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;{</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div>
<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">typename</span> RandomAccessContainer&gt;</div>
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html">   63</a></span>&#160;  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a></div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;  {</div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;</div>
<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#ab0a134075f9d5338f41eaa28cb230fb5">   67</a></span>&#160;    <span class="keyword">typedef</span> boost::unordered_map&lt;UInt64, Size&gt; <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#ab0a134075f9d5338f41eaa28cb230fb5">UniqueIdMap</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a></div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#a5f68b1cb766cd028db41f0ccc28e596a">   85</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a5f68b1cb766cd028db41f0ccc28e596a">uniqueIdToIndex</a>(<a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> unique_id)<span class="keyword"> const</span></div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;      <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;      <span class="keywordflow">try</span></div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;      {</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        index = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.at(unique_id);</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>().at(index).getUniqueId() != unique_id)</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        {</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;          <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">&quot;unique_id_to_index_&quot;</span>);</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        }</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;      }</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;      <span class="keywordflow">catch</span> (std::out_of_range &amp;)</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;      {</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordflow">try</span></div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        {</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;          this-&gt;<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">updateUniqueIdToIndex</a>();</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;          index = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.at(unique_id);</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        }</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;        <span class="keywordflow">catch</span> (std::out_of_range &amp;)</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        {</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;          index = -1;   <span class="comment">// which means: invalid</span></div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;        }</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;      }</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;      <span class="keywordflow">return</span> index;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;    }</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    <span class="keywordtype">void</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">  116</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">updateUniqueIdToIndex</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;      <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> num_valid_unique_id = 0;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      <span class="comment">// add or update unique id of existing features</span></div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index = 0; index &lt; <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>().size(); ++index)</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;      {</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;        <a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> unique_id = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].getUniqueId();</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a906c6865045da1b45893822e2a76b9fc">UniqueIdInterface::isValid</a>(unique_id))</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        {</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;          <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>[unique_id] = index;</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;          ++num_valid_unique_id;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        }</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;      }</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;      <span class="comment">// remove invalid or outdated entries</span></div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.erase(<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#adc29c2ff13d900c2f185ee95427fb06caef2863a469df3ea6871d640e3669a2f2">UniqueIdInterface::INVALID</a>);</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;      <span class="keywordflow">for</span> (UniqueIdMap::iterator iter = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.begin(); iter != <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.end(); <span class="comment">/* see loop */</span>)</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;      {</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;        <span class="keywordflow">if</span> (iter-&gt;second &gt;= <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>().size() || <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[iter-&gt;second].getUniqueId() != iter-&gt;first)</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        {</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;          iter = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.erase(iter);</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        }</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        {</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;          ++iter;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;        }</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;      }</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;      <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.size() != num_valid_unique_id)</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;      {</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;        std::stringstream ss;</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;        ss &lt;&lt; <span class="stringliteral">&quot;Duplicate valid unique ids detected!   RandomAccessContainer has size()==&quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>().size();</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;        ss &lt;&lt; <span class="stringliteral">&quot;, num_valid_unique_id==&quot;</span> &lt;&lt; num_valid_unique_id;</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;        ss &lt;&lt; <span class="stringliteral">&quot;, uniqueid_to_index_.size()==&quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.size();</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1Postcondition.html">Exception::Postcondition</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, ss.str());</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;      }</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    }</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a></div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#aadeff4d5c98a90c2b080ccc45a563731">  167</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aadeff4d5c98a90c2b080ccc45a563731">resolveUniqueIdConflicts</a>()</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    {</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;      <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> invalid_uids(0);</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;      <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.clear();</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;      <span class="comment">// add unique id of existing features</span></div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index = 0; index &lt; <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>().size(); ++index)</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;      {</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        <a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> unique_id = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].getUniqueId();</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;        <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a906c6865045da1b45893822e2a76b9fc">UniqueIdInterface::isValid</a>(unique_id))</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;        {</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;          <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].ensureUniqueId();</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;          unique_id = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].getUniqueId();</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        }</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;        <span class="comment">// see if UID already present</span></div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;        <span class="keywordflow">while</span> (<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.find(unique_id) != <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>.end()) <span class="comment">// double entry!</span></div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        {</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;          <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].setUniqueId();</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;          unique_id = <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()[index].getUniqueId();</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;          ++invalid_uids;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;        }</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>[unique_id] = index;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;      }</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;      <span class="keywordflow">return</span> invalid_uids;</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    }</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;    <span class="keywordtype">void</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#aea463f31c206ea88fbc82a37174b287a">  201</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aea463f31c206ea88fbc82a37174b287a">swap</a>(<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a> &amp; rhs)</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;    {</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;      std::swap(<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>, rhs.<a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>);</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;    }</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    <span class="keyword">const</span> RandomAccessContainer &amp;</div>
<div class="line"><a name="l00214"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">  214</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">getBase_</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;<span class="keyword">    </span>{</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">static_cast&lt;</span><span class="keyword">const </span>RandomAccessContainer *<span class="keyword">&gt;</span>(<span class="keyword">this</span>);</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    }</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;    RandomAccessContainer &amp;</div>
<div class="line"><a name="l00224"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#a9bff7b1f3266265d39149b689e776748">  224</a></span>&#160;    <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#a9bff7b1f3266265d39149b689e776748">getBase_</a>()</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    {</div>
<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;      <span class="keywordflow">return</span> *<span class="keyword">static_cast&lt;</span>RandomAccessContainer *<span class="keyword">&gt;</span>(<span class="keyword">this</span>);</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;    }</div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;</div>
<div class="line"><a name="l00233"></a><span class="lineno"><a class="line" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">  233</a></span>&#160;    <span class="keyword">mutable</span> <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#ab0a134075f9d5338f41eaa28cb230fb5">UniqueIdMap</a> <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">uniqueid_to_index_</a>;</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;  };</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;} <span class="comment">//namespace OpenMS</span></div>
<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;<span class="preprocessor">#endif // OPENMS_CONCEPT_UNIQUEIDINDEXER_H</span></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_a9bff7b1f3266265d39149b689e776748"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#a9bff7b1f3266265d39149b689e776748">OpenMS::UniqueIdIndexer::getBase_</a></div><div class="ttdeci">RandomAccessContainer &amp; getBase_()</div><div class="ttdoc">A little helper to get access to the base (!) class RandomAccessContainer. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:224</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_a16b744907d96a8f9ac2be2da8092fd28"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#a16b744907d96a8f9ac2be2da8092fd28">OpenMS::UniqueIdIndexer::getBase_</a></div><div class="ttdeci">const RandomAccessContainer &amp; getBase_() const </div><div class="ttdoc">A little helper to get access to the base (!) class RandomAccessContainer. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:214</div></div>
<div class="ttc" id="UniqueIdInterface_8h_html"><div class="ttname"><a href="UniqueIdInterface_8h.html">UniqueIdInterface.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_adc29c2ff13d900c2f185ee95427fb06caef2863a469df3ea6871d640e3669a2f2"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#adc29c2ff13d900c2f185ee95427fb06caef2863a469df3ea6871d640e3669a2f2">OpenMS::UniqueIdInterface::INVALID</a></div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_a906c6865045da1b45893822e2a76b9fc"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#a906c6865045da1b45893822e2a76b9fc">OpenMS::UniqueIdInterface::isValid</a></div><div class="ttdeci">static bool isValid(UInt64 unique_id)</div><div class="ttdoc">Returns true if the unique_id is valid, false otherwise. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_aadeff4d5c98a90c2b080ccc45a563731"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#aadeff4d5c98a90c2b080ccc45a563731">OpenMS::UniqueIdIndexer::resolveUniqueIdConflicts</a></div><div class="ttdeci">Size resolveUniqueIdConflicts()</div><div class="ttdoc">Assign new UID&amp;#39;s to doubly occurring UID&amp;#39;s. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_a025daa49d78f1a6e015c31c1bc198c31"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#a025daa49d78f1a6e015c31c1bc198c31">OpenMS::UniqueIdIndexer::updateUniqueIdToIndex</a></div><div class="ttdeci">void updateUniqueIdToIndex() const </div><div class="ttdoc">Updates the hash map from unique id to index. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:116</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_a5f68b1cb766cd028db41f0ccc28e596a"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#a5f68b1cb766cd028db41f0ccc28e596a">OpenMS::UniqueIdIndexer::uniqueIdToIndex</a></div><div class="ttdeci">Size uniqueIdToIndex(UInt64 unique_id) const </div><div class="ttdoc">Returns the index of the feature with the given unique id, or Size(-1) if none exists in this random ...</div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:85</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html">OpenMS::UniqueIdIndexer</a></div><div class="ttdoc">A base class for random access containers for classes derived from UniqueIdInterface that adds functi...</div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:63</div></div>
<div class="ttc" id="group__Concept_html_ga5162db95dc78bdf2e3a71d73bec703e9"><div class="ttname"><a href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">OpenMS::UInt64</a></div><div class="ttdeci">OPENMS_UINT64_TYPE UInt64</div><div class="ttdoc">Unsigned integer type (64bit) </div><div class="ttdef"><b>Definition:</b> Types.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_aea463f31c206ea88fbc82a37174b287a"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#aea463f31c206ea88fbc82a37174b287a">OpenMS::UniqueIdIndexer::swap</a></div><div class="ttdeci">void swap(UniqueIdIndexer &amp;rhs)</div><div class="ttdoc">Swap. </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:201</div></div>
<div class="ttc" id="LogStream_8h_html"><div class="ttname"><a href="LogStream_8h.html">LogStream.h</a></div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1Postcondition_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1Postcondition.html">OpenMS::Exception::Postcondition</a></div><div class="ttdoc">Postcondition failed exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:181</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_ab0a134075f9d5338f41eaa28cb230fb5"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#ab0a134075f9d5338f41eaa28cb230fb5">OpenMS::UniqueIdIndexer::UniqueIdMap</a></div><div class="ttdeci">boost::unordered_map&lt; UInt64, Size &gt; UniqueIdMap</div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:67</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html_aa6774e41aa399644bd8767d062ae9ed2"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html#aa6774e41aa399644bd8767d062ae9ed2">OpenMS::UniqueIdIndexer::uniqueid_to_index_</a></div><div class="ttdeci">UniqueIdMap uniqueid_to_index_</div><div class="ttdoc">hash map from unique id to index of features </div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:233</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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