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<a href="XMassFile_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Guillaume Belz$</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Guillaume Belz$</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_FORMAT_XMASSFILE_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_FORMAT_XMASSFILE_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="AcqusHandler_8h.html">OpenMS/FORMAT/HANDLERS/AcqusHandler.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="FidHandler_8h.html">OpenMS/FORMAT/HANDLERS/FidHandler.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ProgressLogger_8h.html">OpenMS/CONCEPT/ProgressLogger.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;{</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1XMassFile.html">   66</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1XMassFile.html">XMassFile</a> :</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;  {</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    <a class="code" href="classOpenMS_1_1XMassFile.html">XMassFile</a>();</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1XMassFile.html">XMassFile</a>();</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">class</span> PeakType&gt;</div>
<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="classOpenMS_1_1XMassFile.html#a865164e026ef00fa12377c1d63613613">   84</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1XMassFile.html#a865164e026ef00fa12377c1d63613613">load</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; filename, <a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum&lt;PeakType&gt;</a> &amp; spectrum)</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    {</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;      <a class="code" href="classOpenMS_1_1Internal_1_1AcqusHandler.html">Internal::AcqusHandler</a> acqus(filename.<a class="code" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">prefix</a>(filename.length() - 3) + <a class="code" href="classOpenMS_1_1String.html">String</a>(<span class="stringliteral">&quot;acqus&quot;</span>));</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;      <a class="code" href="classOpenMS_1_1Internal_1_1FidHandler.html">Internal::FidHandler</a> fid(filename);</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;      <span class="keywordflow">if</span> (!fid)</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;      {</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1FileNotFound.html">Exception::FileNotFound</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__, filename);</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;      }</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;      <span class="comment">//  Delete old spectrum</span></div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1MSSpectrum.html#af072fc84225ae927f7527f208ea86cbd">clear</a>(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;      <span class="comment">//temporary variables</span></div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;      <a class="code" href="classOpenMS_1_1Peak2D.html">PeakType</a> p;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;      <span class="keywordflow">while</span> (spectrum.size() &lt; acqus.getSize())</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      {</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="comment">//fill peak</span></div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;        p.<a class="code" href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">setPosition</a>((<span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1DPosition.html">PeakType::PositionType</a>)acqus.getPosition(fid.getIndex()));</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        p.<a class="code" href="classOpenMS_1_1Peak2D.html#ab875c2479c6cd2a0189e4684bfa4f97d">setIntensity</a>((<span class="keyword">typename</span> <a class="code" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">PeakType::IntensityType</a>)fid.getIntensity());</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        spectrum.push_back(p);</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;      }</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;      fid.close();</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;      <span class="comment">// import metadata</span></div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">setRT</a>(0.0);</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">setMSLevel</a>(1);</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1MSSpectrum.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(<span class="stringliteral">&quot;Xmass analysis file &quot;</span> + acqus.getParam(<span class="stringliteral">&quot;$ID_raw&quot;</span>));</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#a7fd9d42016cc77134a5a518fc0478add">setType</a>(<a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">SpectrumSettings::RAWDATA</a>);</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#afa370200c7cf12d530364dec51830515">setNativeID</a>(<span class="stringliteral">&quot;spectrum=xsd:&quot;</span> + acqus.getParam(<span class="stringliteral">&quot;$ID_raw&quot;</span>).remove(<span class="charliteral">&#39;&lt;&#39;</span>).remove(<span class="charliteral">&#39;&gt;&#39;</span>));</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">setComment</a>(<span class="stringliteral">&quot;no comment&quot;</span>);</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;      <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> instrument_settings;</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;      instrument_settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">setScanMode</a>(<a class="code" href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0a16e91cdeda492f0745dc99784570f080">InstrumentSettings::MASSSPECTRUM</a>);</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      instrument_settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">setZoomScan</a>(<span class="keyword">false</span>);</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;      <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.IONIZATION MODE&quot;</span>) == <span class="stringliteral">&quot;LD+&quot;</span>)</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;      {</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        instrument_settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">setPolarity</a>(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">IonSource::POSITIVE</a>);</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;      }</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;      <span class="keywordflow">else</span> <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.IONIZATION MODE&quot;</span>) == <span class="stringliteral">&quot;LD-&quot;</span>)</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;      {</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        instrument_settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">setPolarity</a>(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865">IonSource::NEGATIVE</a>);</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;      }</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      {</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;        instrument_settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">setPolarity</a>(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">IonSource::POLNULL</a>);</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;      }</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#a4d6f80bde5859c412b221b0fc51114ba">setInstrumentSettings</a>(instrument_settings);</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;      <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> acquisition_info;</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;      acquisition_info.<a class="code" href="classOpenMS_1_1AcquisitionInfo.html#a2ba2b43016c198589d743be93ff19072">setMethodOfCombination</a>(<span class="stringliteral">&quot;Sum of &quot;</span> + acqus.getParam(<span class="stringliteral">&quot;$NoSHOTS&quot;</span>) + <span class="stringliteral">&quot; raw spectrum&quot;</span>);</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#ae173bdf1ee2cf333fded899217fda962">setAcquisitionInfo</a>(acquisition_info);</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;      <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> source_file;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;      source_file.<a class="code" href="classOpenMS_1_1SourceFile.html#af0a7eddbacf20c4f4045b671df6b0fe7">setNameOfFile</a>(<span class="stringliteral">&quot;fid&quot;</span>);</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;      source_file.<a class="code" href="classOpenMS_1_1SourceFile.html#a2edd9a092842480801a9738a3a514fb3">setPathToFile</a>(filename.<a class="code" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">prefix</a>(filename.length() - 3));</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;      source_file.<a class="code" href="classOpenMS_1_1SourceFile.html#abd1ddea1c593433ad2c04c560a5e94e6">setFileSize</a>(4.0 * acqus.getSize() / 1024 / 1024);   <span class="comment">// 4 bytes / point</span></div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;      source_file.<a class="code" href="classOpenMS_1_1SourceFile.html#a2d47bfad02d5ce05dcfab38bc1b21400">setFileType</a>(<span class="stringliteral">&quot;Xmass analysis file (fid)&quot;</span>);</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#a8c115a86d9d95ea2b664bd4ba4a45af4">setSourceFile</a>(source_file);</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;      <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> data_processing;</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;      <a class="code" href="classOpenMS_1_1Software.html">Software</a> software;</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;      software.<a class="code" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(<span class="stringliteral">&quot;FlexControl&quot;</span>);</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;      <a class="code" href="classOpenMS_1_1String.html">String</a> fc_ver = acqus.getParam(<span class="stringliteral">&quot;$FCVer&quot;</span>);   <span class="comment">// FlexControlVersion</span></div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;      <span class="keywordflow">if</span> (fc_ver.<a class="code" href="classOpenMS_1_1String.html#ae1870a969417d19a33f225046a66a58d">hasPrefix</a>(<span class="stringliteral">&quot;&lt;flexControl &quot;</span>))</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;      {</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;        fc_ver = fc_ver.<a class="code" href="classOpenMS_1_1String.html#a305141aabee4495bc55a45971af1f05e">suffix</a>(<span class="charliteral">&#39; &#39;</span>);</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;      }</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;      <span class="keywordflow">if</span> (fc_ver.<a class="code" href="classOpenMS_1_1String.html#a7b27eb434fa37a2a0ad4295d483a591b">hasSuffix</a>(<span class="stringliteral">&quot;&gt;&quot;</span>))</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;      {</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        fc_ver = fc_ver.<a class="code" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">prefix</a>(<span class="charliteral">&#39;&gt;&#39;</span>);</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;      }</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;      software.<a class="code" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">setVersion</a>(fc_ver);</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;      software.<a class="code" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">setMetaValue</a>(<span class="stringliteral">&quot;Acquisition method&quot;</span>, <a class="code" href="classOpenMS_1_1DataValue.html">DataValue</a>(acqus.getParam(<span class="stringliteral">&quot;$ACQMETH&quot;</span>).remove(<span class="charliteral">&#39;&lt;&#39;</span>).remove(<span class="charliteral">&#39;&gt;&#39;</span>)));</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;      data_processing.<a class="code" href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">setSoftware</a>(software);</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;      std::set&lt;DataProcessing::ProcessingAction&gt; actions;</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;      actions.insert(<a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1">DataProcessing::SMOOTHING</a>);</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;      actions.insert(<a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267">DataProcessing::BASELINE_REDUCTION</a>);</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;      actions.insert(<a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c">DataProcessing::CALIBRATION</a>);</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;      data_processing.<a class="code" href="classOpenMS_1_1DataProcessing.html#ace28c93a6e52cfa962de6e5f4bad1fc8">setProcessingActions</a>(actions);</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;      data_processing.<a class="code" href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">setCompletionTime</a>(<a class="code" href="classOpenMS_1_1DateTime.html#a27fa24aa34288a3934c3d5a936463973">DateTime::now</a>());</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;      std::vector&lt;DataProcessing&gt; data_processing_vector;</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;      data_processing_vector.push_back(data_processing);</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;      spectrum.<a class="code" href="classOpenMS_1_1SpectrumSettings.html#a7694e9703fec55eec39614bd9ee25e8c">setDataProcessing</a>(data_processing_vector);</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    }</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">class</span> PeakType&gt;</div>
<div class="line"><a name="l00182"></a><span class="lineno"><a class="line" href="classOpenMS_1_1XMassFile.html#a43556a513eaa5395c068a7c9874cc6d1">  182</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1XMassFile.html#a43556a513eaa5395c068a7c9874cc6d1">importExperimentalSettings</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; filename, <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment&lt;PeakType&gt;</a> &amp; exp)</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    {</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;      <a class="code" href="classOpenMS_1_1Internal_1_1AcqusHandler.html">Internal::AcqusHandler</a> acqus(filename.<a class="code" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">prefix</a>(filename.length() - 3) + <a class="code" href="classOpenMS_1_1String.html">String</a>(<span class="stringliteral">&quot;acqus&quot;</span>));</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;      <a class="code" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a> &amp; experimental_settings = exp.<a class="code" href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33">getExperimentalSettings</a>();</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;      <a class="code" href="classOpenMS_1_1Instrument.html">Instrument</a> &amp; instrument = experimental_settings.getInstrument();</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;      instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(acqus.getParam(<span class="stringliteral">&quot;SPECTROMETER/DATASYSTEM&quot;</span>));</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;      instrument.<a class="code" href="classOpenMS_1_1Instrument.html#ad841317da64b0da46a6bea90696d3ec6">setVendor</a>(acqus.getParam(<span class="stringliteral">&quot;ORIGIN&quot;</span>));</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;      instrument.<a class="code" href="classOpenMS_1_1Instrument.html#ab8f1a70c86c25fdc807045303471d72a">setModel</a>(acqus.getParam(<span class="stringliteral">&quot;$InstrID&quot;</span>).remove(<span class="charliteral">&#39;&lt;&#39;</span>).remove(<span class="charliteral">&#39;&gt;&#39;</span>));</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;      std::vector&lt;IonSource&gt; &amp; ionSourceList = instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a80c69c45fa9891b7de1229a3ff53f468">getIonSources</a>();</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;      ionSourceList.clear();</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;      ionSourceList.resize(1);</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;      <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.INLET&quot;</span>) == <span class="stringliteral">&quot;DIRECT&quot;</span>)</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;      {</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        ionSourceList[0].setInletType(<a class="code" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fa1ea328a644e627283a35716a54108248">IonSource::DIRECT</a>);</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;      }</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;      {</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;        ionSourceList[0].setInletType(<a class="code" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fae8d599a14534ec7be2a6e24b599b91bd">IonSource::INLETNULL</a>);</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;        ionSourceList[0].setIonizationMethod(<a class="code" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4af44dbf64796c3c09b804546061c39258">IonSource::MALDI</a>);</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;      }</div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;      <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.IONIZATION MODE&quot;</span>) == <span class="stringliteral">&quot;LD+&quot;</span>)</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;      {</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;        ionSourceList[0].setPolarity(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">IonSource::POSITIVE</a>);</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;      }</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;      <span class="keywordflow">else</span> <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.IONIZATION MODE&quot;</span>) == <span class="stringliteral">&quot;LD-&quot;</span>)</div>
<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;      {</div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;        ionSourceList[0].setPolarity(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865">IonSource::NEGATIVE</a>);</div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;      }</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;      {</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;        ionSourceList[0].setPolarity(<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">IonSource::POLNULL</a>);</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;      }</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;      ionSourceList[0].setMetaValue(<span class="stringliteral">&quot;MALDI target reference&quot;</span>, <a class="code" href="classOpenMS_1_1DataValue.html">DataValue</a>(acqus.getParam(<span class="stringliteral">&quot;$TgIDS&quot;</span>).remove(<span class="charliteral">&#39;&lt;&#39;</span>).remove(<span class="charliteral">&#39;&gt;&#39;</span>)));</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;      ionSourceList[0].setOrder(0);</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;      std::vector&lt;MassAnalyzer&gt; &amp; massAnalyzerList = instrument.<a class="code" href="classOpenMS_1_1Instrument.html#af3feca15695c5ad09a91b35d43559e57">getMassAnalyzers</a>();</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;      massAnalyzerList.clear();</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;      massAnalyzerList.resize(1);</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;      <span class="keywordflow">if</span> (acqus.getParam(<span class="stringliteral">&quot;.SPECTROMETER TYPE&quot;</span>) == <span class="stringliteral">&quot;TOF&quot;</span>)</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;      {</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;        massAnalyzerList[0].setType(<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3ac18e0fdb830eeb3a7f657a75000744db">MassAnalyzer::TOF</a>);</div>
<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;      }</div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;      {</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;        massAnalyzerList[0].setType(<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3a39869181b0414af3507c53e260851151">MassAnalyzer::ANALYZERNULL</a>);</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;      }</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;</div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;      <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> date;</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;      date.<a class="code" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">set</a>(acqus.getParam(<span class="stringliteral">&quot;$AQ_DATE&quot;</span>).remove(<span class="charliteral">&#39;&lt;&#39;</span>).remove(<span class="charliteral">&#39;&gt;&#39;</span>));</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;      experimental_settings.setDateTime(date);</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    }</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">typename</span> SpectrumType&gt;</div>
<div class="line"><a name="l00243"></a><span class="lineno"><a class="line" href="classOpenMS_1_1XMassFile.html#a79101323d46a867becad4539db9446b5">  243</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1XMassFile.html#a79101323d46a867becad4539db9446b5">store</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; <span class="comment">/*filename*/</span>, <span class="keyword">const</span> SpectrumType &amp; <span class="comment">/*spectrum*/</span>)</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;    {</div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;      <span class="keywordflow">throw</span> <a class="code" href="classOpenMS_1_1Exception_1_1NotImplemented.html">Exception::NotImplemented</a>(__FILE__, __LINE__, __PRETTY_FUNCTION__);</div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;    }</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;</div>
<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;  };</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;<span class="preprocessor">#endif // OPENMS_FORMAT_XMASSFILE_H</span></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html">OpenMS::DataProcessing</a></div><div class="ttdoc">Descripton of the applied preprocessing steps. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoInterface_html_a135a7e818125b31198a8a65d9ac7a3d1"><div class="ttname"><a href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">OpenMS::MetaInfoInterface::setMetaValue</a></div><div class="ttdeci">void setMetaValue(const String &amp;name, const DataValue &amp;value)</div><div class="ttdoc">sets the DataValue corresponding to a name </div></div>
<div class="ttc" id="classOpenMS_1_1XMassFile_html_a865164e026ef00fa12377c1d63613613"><div class="ttname"><a href="classOpenMS_1_1XMassFile.html#a865164e026ef00fa12377c1d63613613">OpenMS::XMassFile::load</a></div><div class="ttdeci">void load(const String &amp;filename, MSSpectrum&lt; PeakType &gt; &amp;spectrum)</div><div class="ttdoc">Loads a spectrum from a XMass file. </div><div class="ttdef"><b>Definition:</b> XMassFile.h:84</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html"><div class="ttname"><a href="classOpenMS_1_1Instrument.html">OpenMS::Instrument</a></div><div class="ttdoc">Description of a MS instrument. </div><div class="ttdef"><b>Definition:</b> Instrument.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_a4a8c5b2adc05e9ff96a007385bfe9b47"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">OpenMS::Peak2D::IntensityType</a></div><div class="ttdeci">Real IntensityType</div><div class="ttdoc">Intensity type. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ae173bdf1ee2cf333fded899217fda962"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ae173bdf1ee2cf333fded899217fda962">OpenMS::SpectrumSettings::setAcquisitionInfo</a></div><div class="ttdeci">void setAcquisitionInfo(const AcquisitionInfo &amp;acquisition_info)</div><div class="ttdoc">sets the acquisition info </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html">OpenMS::InstrumentSettings</a></div><div class="ttdoc">Description of the settings a MS Instrument was run with. </div><div class="ttdef"><b>Definition:</b> InstrumentSettings.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a80c69c45fa9891b7de1229a3ff53f468"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a80c69c45fa9891b7de1229a3ff53f468">OpenMS::Instrument::getIonSources</a></div><div class="ttdeci">const std::vector&lt; IonSource &gt; &amp; getIonSources() const </div><div class="ttdoc">returns a const reference to the ion source list </div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html">OpenMS::Peak2D</a></div><div class="ttdoc">A 2-dimensional raw data point or peak. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a08b8f804d8602840858ce2d533db675fae8d599a14534ec7be2a6e24b599b91bd"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fae8d599a14534ec7be2a6e24b599b91bd">OpenMS::IonSource::INLETNULL</a></div><div class="ttdoc">Unknown. </div><div class="ttdef"><b>Definition:</b> IonSource.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a71de61b67afb629b55d610f58bebb554"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">OpenMS::InstrumentSettings::setZoomScan</a></div><div class="ttdeci">void setZoomScan(bool zoom_scan)</div><div class="ttdoc">sets if this scan is a zoom (enhanced resolution) scan </div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html_afb2353cf7399e53aa4b59ce122c6fc49"><div class="ttname"><a href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">OpenMS::DateTime::set</a></div><div class="ttdeci">void set(UInt month, UInt day, UInt year, UInt hour, UInt minute, UInt second)</div><div class="ttdoc">sets data from six integers </div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a4d6f80bde5859c412b221b0fc51114ba"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a4d6f80bde5859c412b221b0fc51114ba">OpenMS::SpectrumSettings::setInstrumentSettings</a></div><div class="ttdeci">void setInstrumentSettings(const InstrumentSettings &amp;instrument_settings)</div><div class="ttdoc">sets the instrument settings of the current spectrum </div></div>
<div class="ttc" id="classOpenMS_1_1AcquisitionInfo_html"><div class="ttname"><a href="classOpenMS_1_1AcquisitionInfo.html">OpenMS::AcquisitionInfo</a></div><div class="ttdoc">Description of the combination of raw data to a single spectrum. </div><div class="ttdef"><b>Definition:</b> AcquisitionInfo.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1String_html_a7b27eb434fa37a2a0ad4295d483a591b"><div class="ttname"><a href="classOpenMS_1_1String.html#a7b27eb434fa37a2a0ad4295d483a591b">OpenMS::String::hasSuffix</a></div><div class="ttdeci">bool hasSuffix(const String &amp;string) const </div><div class="ttdoc">true if String ends with string, false otherwise </div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_ad841317da64b0da46a6bea90696d3ec6"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#ad841317da64b0da46a6bea90696d3ec6">OpenMS::Instrument::setVendor</a></div><div class="ttdeci">void setVendor(const String &amp;vendor)</div><div class="ttdoc">sets the instrument vendor </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865">OpenMS::IonSource::NEGATIVE</a></div><div class="ttdoc">Negative polarity. </div><div class="ttdef"><b>Definition:</b> IonSource.h:144</div></div>
<div class="ttc" id="ProgressLogger_8h_html"><div class="ttname"><a href="ProgressLogger_8h.html">ProgressLogger.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_af3feca15695c5ad09a91b35d43559e57"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#af3feca15695c5ad09a91b35d43559e57">OpenMS::Instrument::getMassAnalyzers</a></div><div class="ttdeci">const std::vector&lt; MassAnalyzer &gt; &amp; getMassAnalyzers() const </div><div class="ttdoc">returns a const reference to the mass analyer list </div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html_a2d47bfad02d5ce05dcfab38bc1b21400"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html#a2d47bfad02d5ce05dcfab38bc1b21400">OpenMS::SourceFile::setFileType</a></div><div class="ttdeci">void setFileType(const String &amp;file_type)</div><div class="ttdoc">sets the file type </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_ae5412841952d50bcec24df4868e86e67"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">OpenMS::InstrumentSettings::setScanMode</a></div><div class="ttdeci">void setScanMode(ScanMode scan_mode)</div><div class="ttdoc">sets the scan mode </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">OpenMS::IonSource::POSITIVE</a></div><div class="ttdoc">Positive polarity. </div><div class="ttdef"><b>Definition:</b> IonSource.h:143</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a2116f9b1dde8ba3aef4a07e6f2a970a7"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">OpenMS::SpectrumSettings::setComment</a></div><div class="ttdeci">void setComment(const String &amp;comment)</div><div class="ttdoc">sets the free-text comment </div></div>
<div class="ttc" id="FidHandler_8h_html"><div class="ttname"><a href="FidHandler_8h.html">FidHandler.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_ace28c93a6e52cfa962de6e5f4bad1fc8"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#ace28c93a6e52cfa962de6e5f4bad1fc8">OpenMS::DataProcessing::setProcessingActions</a></div><div class="ttdeci">void setProcessingActions(const std::set&lt; ProcessingAction &gt; &amp;actions)</div><div class="ttdoc">sets the description of the applied processing </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a205c68b92698410dc6142632417ae0c8"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">OpenMS::InstrumentSettings::setPolarity</a></div><div class="ttdeci">void setPolarity(IonSource::Polarity polarity)</div><div class="ttdoc">sets the polarity </div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a77d37f2e1c12e8bd33ea0e660a89e927"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a77d37f2e1c12e8bd33ea0e660a89e927">OpenMS::Instrument::setName</a></div><div class="ttdeci">void setName(const String &amp;name)</div><div class="ttdoc">sets the name of the instrument </div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267">OpenMS::DataProcessing::BASELINE_REDUCTION</a></div><div class="ttdoc">Baseline reduction. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html">OpenMS::SourceFile</a></div><div class="ttdoc">Description of a file location, used to store the origin of (meta) data. </div><div class="ttdef"><b>Definition:</b> SourceFile.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_a77d37f2e1c12e8bd33ea0e660a89e927"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#a77d37f2e1c12e8bd33ea0e660a89e927">OpenMS::MSSpectrum::setName</a></div><div class="ttdeci">void setName(const String &amp;name)</div><div class="ttdoc">Sets the name. </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:249</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">OpenMS::SpectrumSettings::RAWDATA</a></div><div class="ttdoc">Raw data (also called profile data) </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1FileNotFound_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1FileNotFound.html">OpenMS::Exception::FileNotFound</a></div><div class="ttdoc">File not found exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:524</div></div>
<div class="ttc" id="classOpenMS_1_1Software_html"><div class="ttname"><a href="classOpenMS_1_1Software.html">OpenMS::Software</a></div><div class="ttdoc">Description of the software used for processing. </div><div class="ttdef"><b>Definition:</b> Software.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1XMassFile_html"><div class="ttname"><a href="classOpenMS_1_1XMassFile.html">OpenMS::XMassFile</a></div><div class="ttdoc">File adapter for &amp;#39;XMass Analysis (fid)&amp;#39; files. </div><div class="ttdef"><b>Definition:</b> XMassFile.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_ab875c2479c6cd2a0189e4684bfa4f97d"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#ab875c2479c6cd2a0189e4684bfa4f97d">OpenMS::Peak2D::setIntensity</a></div><div class="ttdeci">void setIntensity(IntensityType intensity)</div><div class="ttdoc">Non-mutable access to the data point intensity (height) </div><div class="ttdef"><b>Definition:</b> Peak2D.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1DataValue_html"><div class="ttname"><a href="classOpenMS_1_1DataValue.html">OpenMS::DataValue</a></div><div class="ttdoc">Class to hold strings, numeric values, lists of strings and lists of numeric values. </div><div class="ttdef"><b>Definition:</b> DataValue.h:57</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a134230547dd6de10b20f6904d9422ec3ac18e0fdb830eeb3a7f657a75000744db"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3ac18e0fdb830eeb3a7f657a75000744db">OpenMS::MassAnalyzer::TOF</a></div><div class="ttdoc">Time-of-flight. </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a134230547dd6de10b20f6904d9422ec3a39869181b0414af3507c53e260851151"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3a39869181b0414af3507c53e260851151">OpenMS::MassAnalyzer::ANALYZERNULL</a></div><div class="ttdoc">Unknown. </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_a1429c5f03fd5bf24ca23b2666cd30422"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">OpenMS::DataProcessing::setCompletionTime</a></div><div class="ttdeci">void setCompletionTime(const DateTime &amp;completion_time)</div><div class="ttdoc">sets the time of completition taking a DateTime object </div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum&lt; PeakType &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1FidHandler_html"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1FidHandler.html">OpenMS::Internal::FidHandler</a></div><div class="ttdoc">Read-only fid File handler for XMass Analysis. </div><div class="ttdef"><b>Definition:</b> FidHandler.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1DPosition_html"><div class="ttname"><a href="classOpenMS_1_1DPosition.html">OpenMS::DPosition&lt; 2 &gt;</a></div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c">OpenMS::DataProcessing::CALIBRATION</a></div><div class="ttdoc">Calibration of m/z positions. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a97a188fab675068e314d4058d9bb5c33"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33">OpenMS::MSExperiment::getExperimentalSettings</a></div><div class="ttdeci">const ExperimentalSettings &amp; getExperimentalSettings() const </div><div class="ttdoc">returns the meta information of this experiment (const access) </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:664</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_a8ff34073a7ed3fabe3f5deff96c0282e"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">OpenMS::DataProcessing::setSoftware</a></div><div class="ttdeci">void setSoftware(const Software &amp;software)</div><div class="ttdoc">sets the software used for processing </div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_a24f081fe74bbbf773533ad19e96d8358"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">OpenMS::MSSpectrum::setMSLevel</a></div><div class="ttdeci">void setMSLevel(UInt ms_level)</div><div class="ttdoc">Sets the MS level. </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:237</div></div>
<div class="ttc" id="AcqusHandler_8h_html"><div class="ttname"><a href="AcqusHandler_8h.html">AcqusHandler.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_abbdecccbbcf763c6c5eae3b7c3cb915e"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">OpenMS::Peak2D::setPosition</a></div><div class="ttdeci">void setPosition(const PositionType &amp;position)</div><div class="ttdoc">Mutable access to the position. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:185</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_af072fc84225ae927f7527f208ea86cbd"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#af072fc84225ae927f7527f208ea86cbd">OpenMS::MSSpectrum::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data)</div><div class="ttdoc">Clears all data and meta data. </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:605</div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html_af0a7eddbacf20c4f4045b671df6b0fe7"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html#af0a7eddbacf20c4f4045b671df6b0fe7">OpenMS::SourceFile::setNameOfFile</a></div><div class="ttdeci">void setNameOfFile(const String &amp;name_of_file)</div><div class="ttdoc">sets the file name </div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_af9810188aa685015e084d147d439aa8a"><div class="ttname"><a href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">OpenMS::Software::setVersion</a></div><div class="ttdeci">void setVersion(const String &amp;version)</div><div class="ttdoc">sets the software version </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a8c115a86d9d95ea2b664bd4ba4a45af4"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a8c115a86d9d95ea2b664bd4ba4a45af4">OpenMS::SpectrumSettings::setSourceFile</a></div><div class="ttdeci">void setSourceFile(const SourceFile &amp;source_file)</div><div class="ttdoc">sets the source file </div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a7fd9d42016cc77134a5a518fc0478add"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a7fd9d42016cc77134a5a518fc0478add">OpenMS::SpectrumSettings::setType</a></div><div class="ttdeci">void setType(SpectrumType type)</div><div class="ttdoc">sets the spectrum type </div></div>
<div class="ttc" id="classOpenMS_1_1XMassFile_html_a79101323d46a867becad4539db9446b5"><div class="ttname"><a href="classOpenMS_1_1XMassFile.html#a79101323d46a867becad4539db9446b5">OpenMS::XMassFile::store</a></div><div class="ttdeci">void store(const String &amp;, const SpectrumType &amp;)</div><div class="ttdoc">Stores a spectrum in a XMass file (not avaible) </div><div class="ttdef"><b>Definition:</b> XMassFile.h:243</div></div>
<div class="ttc" id="classOpenMS_1_1AcquisitionInfo_html_a2ba2b43016c198589d743be93ff19072"><div class="ttname"><a href="classOpenMS_1_1AcquisitionInfo.html#a2ba2b43016c198589d743be93ff19072">OpenMS::AcquisitionInfo::setMethodOfCombination</a></div><div class="ttdeci">void setMethodOfCombination(const String &amp;method_of_combination)</div><div class="ttdoc">sets the method of combination </div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html_abd1ddea1c593433ad2c04c560a5e94e6"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html#abd1ddea1c593433ad2c04c560a5e94e6">OpenMS::SourceFile::setFileSize</a></div><div class="ttdeci">void setFileSize(Real file_size)</div><div class="ttdoc">sets the file size in MB </div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1">OpenMS::DataProcessing::SMOOTHING</a></div><div class="ttdoc">Smoothing of the signal to reduce noise. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1MSSpectrum_html_aac8c50f318154e9e5b7b01aee806e17f"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">OpenMS::MSSpectrum::setRT</a></div><div class="ttdeci">void setRT(DoubleReal rt)</div><div class="ttdoc">Sets the absolute retention time (is seconds) </div><div class="ttdef"><b>Definition:</b> MSSpectrum.h:221</div></div>
<div class="ttc" id="classOpenMS_1_1String_html_a3b68228d65702a6a614e8e4226d25b8d"><div class="ttname"><a href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">OpenMS::String::prefix</a></div><div class="ttdeci">String prefix(SizeType length) const </div><div class="ttdoc">returns the prefix of length length </div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_a7694e9703fec55eec39614bd9ee25e8c"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#a7694e9703fec55eec39614bd9ee25e8c">OpenMS::SpectrumSettings::setDataProcessing</a></div><div class="ttdeci">void setDataProcessing(const std::vector&lt; DataProcessing &gt; &amp;data_processing)</div><div class="ttdoc">sets the description of the applied processing </div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html"><div class="ttname"><a href="classOpenMS_1_1DateTime.html">OpenMS::DateTime</a></div><div class="ttdoc">DateTime Class. </div><div class="ttdef"><b>Definition:</b> DateTime.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1ProgressLogger_html"><div class="ttname"><a href="classOpenMS_1_1ProgressLogger.html">OpenMS::ProgressLogger</a></div><div class="ttdoc">Base class for all classes that want to report their progess. </div><div class="ttdef"><b>Definition:</b> ProgressLogger.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_afa370200c7cf12d530364dec51830515"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#afa370200c7cf12d530364dec51830515">OpenMS::SpectrumSettings::setNativeID</a></div><div class="ttdeci">void setNativeID(const String &amp;native_id)</div><div class="ttdoc">sets the native identifier for the spectrum, used by the acquisition software. </div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1AcqusHandler_html"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1AcqusHandler.html">OpenMS::Internal::AcqusHandler</a></div><div class="ttdoc">Read-only acqus File handler for XMass Analysis. </div><div class="ttdef"><b>Definition:</b> AcqusHandler.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_af9e3bb003dab9b2cf00854a1eb3b01f0a16e91cdeda492f0745dc99784570f080"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0a16e91cdeda492f0745dc99784570f080">OpenMS::InstrumentSettings::MASSSPECTRUM</a></div><div class="ttdoc">general spectrum type </div><div class="ttdef"><b>Definition:</b> InstrumentSettings.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1XMassFile_html_a43556a513eaa5395c068a7c9874cc6d1"><div class="ttname"><a href="classOpenMS_1_1XMassFile.html#a43556a513eaa5395c068a7c9874cc6d1">OpenMS::XMassFile::importExperimentalSettings</a></div><div class="ttdeci">void importExperimentalSettings(const String &amp;filename, MSExperiment&lt; PeakType &gt; &amp;exp)</div><div class="ttdoc">Import settings from a XMass file. </div><div class="ttdef"><b>Definition:</b> XMassFile.h:182</div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html_a27fa24aa34288a3934c3d5a936463973"><div class="ttname"><a href="classOpenMS_1_1DateTime.html#a27fa24aa34288a3934c3d5a936463973">OpenMS::DateTime::now</a></div><div class="ttdeci">static DateTime now()</div><div class="ttdoc">Returns the current date and time. </div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_a77d37f2e1c12e8bd33ea0e660a89e927"><div class="ttname"><a href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">OpenMS::Software::setName</a></div><div class="ttdeci">void setName(const String &amp;name)</div><div class="ttdoc">sets the name of the software </div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_ab8f1a70c86c25fdc807045303471d72a"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#ab8f1a70c86c25fdc807045303471d72a">OpenMS::Instrument::setModel</a></div><div class="ttdeci">void setModel(const String &amp;model)</div><div class="ttdoc">sets the instrument model </div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html_a2edd9a092842480801a9738a3a514fb3"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html#a2edd9a092842480801a9738a3a514fb3">OpenMS::SourceFile::setPathToFile</a></div><div class="ttdeci">void setPathToFile(const String &amp;path_path_to_file)</div><div class="ttdoc">sets the file path </div></div>
<div class="ttc" id="classOpenMS_1_1String_html_a305141aabee4495bc55a45971af1f05e"><div class="ttname"><a href="classOpenMS_1_1String.html#a305141aabee4495bc55a45971af1f05e">OpenMS::String::suffix</a></div><div class="ttdeci">String suffix(SizeType length) const </div><div class="ttdoc">returns the suffix of length length </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_aa1f350d16338b42e2384db2e5aa4a3f4af44dbf64796c3c09b804546061c39258"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4af44dbf64796c3c09b804546061c39258">OpenMS::IonSource::MALDI</a></div><div class="ttdoc">Matrix-assisted laser desorption ionization. </div><div class="ttdef"><b>Definition:</b> IonSource.h:107</div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1NotImplemented_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1NotImplemented.html">OpenMS::Exception::NotImplemented</a></div><div class="ttdoc">Not implemented exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:437</div></div>
<div class="ttc" id="classOpenMS_1_1ExperimentalSettings_html"><div class="ttname"><a href="classOpenMS_1_1ExperimentalSettings.html">OpenMS::ExperimentalSettings</a></div><div class="ttdoc">Description of the experimental settings. </div><div class="ttdef"><b>Definition:</b> ExperimentalSettings.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">OpenMS::IonSource::POLNULL</a></div><div class="ttdoc">Unknown. </div><div class="ttdef"><b>Definition:</b> IonSource.h:142</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a08b8f804d8602840858ce2d533db675fa1ea328a644e627283a35716a54108248"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fa1ea328a644e627283a35716a54108248">OpenMS::IonSource::DIRECT</a></div><div class="ttdoc">Direct. </div><div class="ttdef"><b>Definition:</b> IonSource.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1String_html_ae1870a969417d19a33f225046a66a58d"><div class="ttname"><a href="classOpenMS_1_1String.html#ae1870a969417d19a33f225046a66a58d">OpenMS::String::hasPrefix</a></div><div class="ttdeci">bool hasPrefix(const String &amp;string) const </div><div class="ttdoc">true if String begins with string, false otherwise </div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5</font></TD>
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