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<HTML>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
<a href="#pro-methods">Protected Member Functions</a> |
<a href="#pri-types">Private Types</a> |
<a href="#pri-methods">Private Member Functions</a> |
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<div class="title">AccurateMassSearchEngine Class Reference</div> </div>
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<p><code>#include <<a class="el" href="AccurateMassSearchEngine_8h_source.html">OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for AccurateMassSearchEngine:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1AccurateMassSearchEngine.png" usemap="#AccurateMassSearchEngine_map" alt=""/>
<map id="AccurateMassSearchEngine_map" name="AccurateMassSearchEngine_map">
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,174,24"/>
<area href="classOpenMS_1_1ProgressLogger.html" title="Base class for all classes that want to report their progess. " alt="ProgressLogger" shape="rect" coords="184,0,358,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a2827ea0b8c802e5334b5fe7d25524d5b"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a2827ea0b8c802e5334b5fe7d25524d5b">AccurateMassSearchEngine</a> ()</td></tr>
<tr class="memdesc:a2827ea0b8c802e5334b5fe7d25524d5b"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a2827ea0b8c802e5334b5fe7d25524d5b">More...</a><br/></td></tr>
<tr class="separator:a2827ea0b8c802e5334b5fe7d25524d5b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9ea4e7c05805903478778b6b35196135"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a9ea4e7c05805903478778b6b35196135">~AccurateMassSearchEngine</a> ()</td></tr>
<tr class="memdesc:a9ea4e7c05805903478778b6b35196135"><td class="mdescLeft"> </td><td class="mdescRight">Default destructor. <a href="#a9ea4e7c05805903478778b6b35196135">More...</a><br/></td></tr>
<tr class="separator:a9ea4e7c05805903478778b6b35196135"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7a556a94f9208d3e5dc786b59ac6c45b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a7a556a94f9208d3e5dc786b59ac6c45b">queryByMass</a> (const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &, const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &, std::vector< <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a> > &)</td></tr>
<tr class="separator:a7a556a94f9208d3e5dc786b59ac6c45b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a52ae6b377fc211c2f868b610d0af3c87"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a52ae6b377fc211c2f868b610d0af3c87">queryByFeature</a> (const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &, const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &, std::vector< <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a> > &)</td></tr>
<tr class="separator:a52ae6b377fc211c2f868b610d0af3c87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a03fa185bde907c15af53974c9f78ff52"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a03fa185bde907c15af53974c9f78ff52">queryByConsensusFeature</a> (const <a class="el" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> &, const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &, const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &, std::vector< <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a> > &)</td></tr>
<tr class="separator:a03fa185bde907c15af53974c9f78ff52"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3fc2b50ae96345542e487e2d8640d0a5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a3fc2b50ae96345542e487e2d8640d0a5">run</a> (const <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a><> &, <a class="el" href="classOpenMS_1_1MzTab.html">MzTab</a> &)</td></tr>
<tr class="memdesc:a3fc2b50ae96345542e487e2d8640d0a5"><td class="mdescLeft"> </td><td class="mdescRight">main method of <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a> <a href="#a3fc2b50ae96345542e487e2d8640d0a5">More...</a><br/></td></tr>
<tr class="separator:a3fc2b50ae96345542e487e2d8640d0a5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab8d793b67d5d760d207b3881f7e80909"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ab8d793b67d5d760d207b3881f7e80909">run</a> (const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &, <a class="el" href="classOpenMS_1_1MzTab.html">MzTab</a> &)</td></tr>
<tr class="separator:ab8d793b67d5d760d207b3881f7e80909"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a2a106011aec95b2013d7a545f2063d01">More...</a><br/></td></tr>
<tr class="separator:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a19c882d907f90f7f88c7436d82cd2a13">~ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a19c882d907f90f7f88c7436d82cd2a13">More...</a><br/></td></tr>
<tr class="separator:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">setLogType</a> (<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> type) const </td></tr>
<tr class="memdesc:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the progress log that should be used. The default type is NONE! <a href="#acc3538c5284777d8702ccaefeb61e74c">More...</a><br/></td></tr>
<tr class="separator:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a67024cdd5c34ec571baecabd8f783310">getLogType</a> () const </td></tr>
<tr class="memdesc:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Returns the type of progress log being used. <a href="#a67024cdd5c34ec571baecabd8f783310">More...</a><br/></td></tr>
<tr class="separator:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">startProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> begin, <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> end, const <a class="el" href="classOpenMS_1_1String.html">String</a> &label) const </td></tr>
<tr class="memdesc:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Initializes the progress display. <a href="#af1c45ecd71b5041b70319249e8e73591">More...</a><br/></td></tr>
<tr class="separator:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">setProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> value) const </td></tr>
<tr class="memdesc:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the current progress. <a href="#a8852277abd03220cc7b80d6c1bed6fed">More...</a><br/></td></tr>
<tr class="separator:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">endProgress</a> () const </td></tr>
<tr class="memdesc:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Ends the progress display. <a href="#a1cc1012b0cdaea97f58d571af1ff45de">More...</a><br/></td></tr>
<tr class="separator:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-types"></a>
Private Types</h2></td></tr>
<tr class="memitem:a4c35257e24f4f92978d6b815b311a32d"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< std::vector<br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a4c35257e24f4f92978d6b815b311a32d">QueryResultsTable</a></td></tr>
<tr class="separator:a4c35257e24f4f92978d6b815b311a32d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0ea9b774f60ee47fed8174f7d5491c8f"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0ea9b774f60ee47fed8174f7d5491c8f">MassIDMapping</a></td></tr>
<tr class="memdesc:a0ea9b774f60ee47fed8174f7d5491c8f"><td class="mdescLeft"> </td><td class="mdescRight">private member variables <a href="#a0ea9b774f60ee47fed8174f7d5491c8f">More...</a><br/></td></tr>
<tr class="separator:a0ea9b774f60ee47fed8174f7d5491c8f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad8a2b8f6c919ecfa8384f99add5c9961"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ad8a2b8f6c919ecfa8384f99add5c9961">HMDBPropsMapping</a></td></tr>
<tr class="separator:ad8a2b8f6c919ecfa8384f99add5c9961"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:ae9f420f4f25b27e27ed1e97ea008ed5e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ae9f420f4f25b27e27ed1e97ea008ed5e">parseMappingFile_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &)</td></tr>
<tr class="memdesc:ae9f420f4f25b27e27ed1e97ea008ed5e"><td class="mdescLeft"> </td><td class="mdescRight">private member functions <a href="#ae9f420f4f25b27e27ed1e97ea008ed5e">More...</a><br/></td></tr>
<tr class="separator:ae9f420f4f25b27e27ed1e97ea008ed5e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1abfabf5d0b75efd72bdcf7b6d966792"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a1abfabf5d0b75efd72bdcf7b6d966792">parseStructMappingFile_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &)</td></tr>
<tr class="separator:a1abfabf5d0b75efd72bdcf7b6d966792"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af8c171e55c33f793b3ae0b800f762f62"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#af8c171e55c33f793b3ae0b800f762f62">parseAdductsFile_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &)</td></tr>
<tr class="separator:af8c171e55c33f793b3ae0b800f762f62"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a638b842e76aa60cc9b33e9d616e54fbe"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a638b842e76aa60cc9b33e9d616e54fbe">searchMass_</a> (const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &, std::vector< <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> > &hit_indices)</td></tr>
<tr class="separator:a638b842e76aa60cc9b33e9d616e54fbe"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6a8bd1db1cdeb1d98d58a8836707bfd"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ae6a8bd1db1cdeb1d98d58a8836707bfd">parseAdductString_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &, std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > &)</td></tr>
<tr class="separator:ae6a8bd1db1cdeb1d98d58a8836707bfd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acb0b1381f9198c722ccafda7dee37271"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#acb0b1381f9198c722ccafda7dee37271">computeNeutralMassFromAdduct_</a> (const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &, const <a class="el" href="classOpenMS_1_1String.html">String</a> &, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &)</td></tr>
<tr class="separator:acb0b1381f9198c722ccafda7dee37271"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a29a33d2d3fed1ee6659e0ba2534cf708"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a29a33d2d3fed1ee6659e0ba2534cf708">computeCosineSim_</a> (const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &x, const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &y)</td></tr>
<tr class="separator:a29a33d2d3fed1ee6659e0ba2534cf708"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a80f97ee8c9e285a94c049f7e2dbefdb7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a80f97ee8c9e285a94c049f7e2dbefdb7">computeEuclideanDist_</a> (const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &x, const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &y)</td></tr>
<tr class="separator:a80f97ee8c9e285a94c049f7e2dbefdb7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a135fe36d153f9931904038cad28c6ed6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a135fe36d153f9931904038cad28c6ed6">computeIsotopePatternSimilarity_</a> (const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &, const <a class="el" href="classOpenMS_1_1EmpiricalFormula.html">EmpiricalFormula</a> &)</td></tr>
<tr class="separator:a135fe36d153f9931904038cad28c6ed6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0dbd13efebee912cee683dc404f676c2"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0dbd13efebee912cee683dc404f676c2">exportMzTab_</a> (const <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a4c35257e24f4f92978d6b815b311a32d">QueryResultsTable</a> &, <a class="el" href="classOpenMS_1_1MzTab.html">MzTab</a> &)</td></tr>
<tr class="separator:a0dbd13efebee912cee683dc404f676c2"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:afe99d4c7cbd3d01d7dbe5e479a701875"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#afe99d4c7cbd3d01d7dbe5e479a701875">masskey_table_</a></td></tr>
<tr class="separator:afe99d4c7cbd3d01d7dbe5e479a701875"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5267618896691cded2d25bd8481cded9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0ea9b774f60ee47fed8174f7d5491c8f">MassIDMapping</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a5267618896691cded2d25bd8481cded9">mass_id_mapping_</a></td></tr>
<tr class="separator:a5267618896691cded2d25bd8481cded9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a687ecbf0c9380eb74722080d693ec1d5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ad8a2b8f6c919ecfa8384f99add5c9961">HMDBPropsMapping</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a687ecbf0c9380eb74722080d693ec1d5">hmdb_properties_mapping_</a></td></tr>
<tr class="separator:a687ecbf0c9380eb74722080d693ec1d5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4e3d4a43a637e171265056bc84dafe93"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a4e3d4a43a637e171265056bc84dafe93">mass_formula_mapping_</a></td></tr>
<tr class="separator:a4e3d4a43a637e171265056bc84dafe93"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae9358d568dcb0ed5cd24526b3b2d9b03"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ae9358d568dcb0ed5cd24526b3b2d9b03">mass_error_value_</a></td></tr>
<tr class="memdesc:ae9358d568dcb0ed5cd24526b3b2d9b03"><td class="mdescLeft"> </td><td class="mdescRight">parameter stuff <a href="#ae9358d568dcb0ed5cd24526b3b2d9b03">More...</a><br/></td></tr>
<tr class="separator:ae9358d568dcb0ed5cd24526b3b2d9b03"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a29bfbe901bae7c6be67b2e24379b496f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a29bfbe901bae7c6be67b2e24379b496f">mass_error_unit_</a></td></tr>
<tr class="separator:a29bfbe901bae7c6be67b2e24379b496f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a821d118c7235be8599fa1d557cf1797b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a821d118c7235be8599fa1d557cf1797b">ion_mode_</a></td></tr>
<tr class="separator:a821d118c7235be8599fa1d557cf1797b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4ea9113b5d51d4ec5af87482ebad921a"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a4ea9113b5d51d4ec5af87482ebad921a">iso_similarity_</a></td></tr>
<tr class="separator:a4ea9113b5d51d4ec5af87482ebad921a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0f782943339fac9357fefc22c3807cdc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0f782943339fac9357fefc22c3807cdc">pos_adducts_fname_</a></td></tr>
<tr class="separator:a0f782943339fac9357fefc22c3807cdc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a66fcd6bcab16652adbe85fbba967c873"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a66fcd6bcab16652adbe85fbba967c873">neg_adducts_fname_</a></td></tr>
<tr class="separator:a66fcd6bcab16652adbe85fbba967c873"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a59e4ea79f4771e4b3fb342bc84711d48"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a59e4ea79f4771e4b3fb342bc84711d48">pos_adducts_</a></td></tr>
<tr class="separator:a59e4ea79f4771e4b3fb342bc84711d48"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab6ac6c5e4ca61b6a1de22eeeb4f9395e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ab6ac6c5e4ca61b6a1de22eeeb4f9395e">neg_adducts_</a></td></tr>
<tr class="separator:ab6ac6c5e4ca61b6a1de22eeeb4f9395e"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> { <a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca3ab34dd50405af2d5a62627d572f7860">CMD</a>,
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca73c6901c7c648a6a735770bc038bb26a">GUI</a>,
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87cac157bdf0b85a40d2619cbc8bc1ae5fe2">NONE</a>
}</td></tr>
<tr class="memdesc:af67907baa897e9fb84df0cb89795b87c"><td class="mdescLeft"> </td><td class="mdescRight">Possible log types. <a href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">More...</a><br/></td></tr>
<tr class="separator:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a7c691d7de2a43bc5606e96cb15da3641">type_</a></td></tr>
<tr class="separator:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a56589612e0e4164bf80c3918a087d05a">begin_</a></td></tr>
<tr class="separator:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a0c749bf4e621699b7a5c45ae22c2fa90">end_</a></td></tr>
<tr class="separator:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#aec57b26e143202dc119a41592e075932">value_</a></td></tr>
<tr class="separator:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">QProgressDialog * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a76072b3919abcf01141ba68da8a001fd">dlg_</a></td></tr>
<tr class="separator:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6d9750520313ea7f843d7a49cb2e9e5f inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StopWatch.html">StopWatch</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a6d9750520313ea7f843d7a49cb2e9e5f">stop_watch_</a></td></tr>
<tr class="separator:a6d9750520313ea7f843d7a49cb2e9e5f inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">time_t </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a79bacf60c4109d7517590441c7f85f9c">last_invoke_</a></td></tr>
<tr class="separator:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_static_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_static_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Static Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a94eb3ef5ef94b83eb348dd00a2b53119">recursion_depth_</a></td></tr>
<tr class="separator:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<h2 class="groupheader">Member Typedef Documentation</h2>
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<td class="memname">typedef std::map<<a class="el" href="classOpenMS_1_1String.html">String</a>, std::vector<<a class="el" href="classOpenMS_1_1String.html">String</a>> > <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ad8a2b8f6c919ecfa8384f99add5c9961">HMDBPropsMapping</a></td>
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</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
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</div><div class="memdoc">
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<td class="memname">typedef std::vector<std::vector<<a class="el" href="classOpenMS_1_1String.html">String</a>> > <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0ea9b774f60ee47fed8174f7d5491c8f">MassIDMapping</a></td>
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<p>private member variables </p>
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<td class="memname">typedef std::vector<std::vector<<a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a>> > <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a4c35257e24f4f92978d6b815b311a32d">QueryResultsTable</a></td>
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a> </td>
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<p>Default constructor. </p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a> </td>
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<p>Default destructor. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> computeCosineSim_ </td>
<td>(</td>
<td class="paramtype">const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > & </td>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> computeEuclideanDist_ </td>
<td>(</td>
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<td class="paramtype">const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > & </td>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> computeIsotopePatternSimilarity_ </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> & </td>
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<td class="memname">void computeNeutralMassFromAdduct_ </td>
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<td class="memname">void exportMzTab_ </td>
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<td class="memname">void parseAdductsFile_ </td>
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<td class="memname">void parseMappingFile_ </td>
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<p>private member functions </p>
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<td class="memname">void parseStructMappingFile_ </td>
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<td class="memname">void queryByConsensusFeature </td>
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<td class="paramtype">const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> & </td>
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<td class="memname">void queryByFeature </td>
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<td class="paramtype">const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> & </td>
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<td class="memname">void queryByMass </td>
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<td class="memname">void run </td>
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<p>main method of <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a> </p>
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<td class="memname">void run </td>
<td>(</td>
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<td class="memname">void searchMass_ </td>
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<td class="memname">virtual void updateMembers_ </td>
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<p>This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. </p>
<p>Also call it at the end of the derived classes' copy constructor and assignment operator.</p>
<p>The default implementation is empty. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">DefaultParamHandler</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ad8a2b8f6c919ecfa8384f99add5c9961">HMDBPropsMapping</a> hmdb_properties_mapping_</td>
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<td class="memname">bool iso_similarity_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> mass_error_unit_</td>
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<p>parameter stuff </p>
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<td class="memname">std::vector<<a class="el" href="classOpenMS_1_1String.html">String</a>> mass_formula_mapping_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0ea9b774f60ee47fed8174f7d5491c8f">MassIDMapping</a> mass_id_mapping_</td>
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<td class="memname">std::vector<<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>> masskey_table_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> neg_adducts_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> neg_adducts_fname_</td>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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