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<HTML>
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<TITLE>AverageLinkage Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="classOpenMS_1_1AverageLinkage-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">AverageLinkage Class Reference<div class="ingroups"><a class="el" href="group__SpectraClustering.html">Clustering</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p><a class="el" href="classOpenMS_1_1AverageLinkage.html" title="AverageLinkage ClusterMethod. ">AverageLinkage</a> ClusterMethod.
<a href="classOpenMS_1_1AverageLinkage.html#details">More...</a></p>
<p><code>#include <<a class="el" href="AverageLinkage_8h_source.html">OpenMS/COMPARISON/CLUSTERING/AverageLinkage.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for AverageLinkage:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1AverageLinkage.png" usemap="#AverageLinkage_map" alt=""/>
<map id="AverageLinkage_map" name="AverageLinkage_map">
<area href="classOpenMS_1_1ClusterFunctor.html" title="Base class for cluster functors. " alt="ClusterFunctor" shape="rect" coords="0,0,105,24"/>
<area href="classOpenMS_1_1ProgressLogger.html" title="Base class for all classes that want to report their progess. " alt="ProgressLogger" shape="rect" coords="115,0,220,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:aa086a85b5f21137545f4d65f939a153e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#aa086a85b5f21137545f4d65f939a153e">AverageLinkage</a> ()</td></tr>
<tr class="memdesc:aa086a85b5f21137545f4d65f939a153e"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#aa086a85b5f21137545f4d65f939a153e">More...</a><br/></td></tr>
<tr class="separator:aa086a85b5f21137545f4d65f939a153e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a677e8896b8d9d757a6265674f44be6bc"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#a677e8896b8d9d757a6265674f44be6bc">AverageLinkage</a> (const <a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a> &source)</td></tr>
<tr class="memdesc:a677e8896b8d9d757a6265674f44be6bc"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a677e8896b8d9d757a6265674f44be6bc">More...</a><br/></td></tr>
<tr class="separator:a677e8896b8d9d757a6265674f44be6bc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adafef975b05f199d7a1af407c89acdbc"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#adafef975b05f199d7a1af407c89acdbc">~AverageLinkage</a> ()</td></tr>
<tr class="memdesc:adafef975b05f199d7a1af407c89acdbc"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#adafef975b05f199d7a1af407c89acdbc">More...</a><br/></td></tr>
<tr class="separator:adafef975b05f199d7a1af407c89acdbc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af4e6a9fdbb1188fa1c9bbf176c619e3f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#af4e6a9fdbb1188fa1c9bbf176c619e3f">operator=</a> (const <a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a> &source)</td></tr>
<tr class="memdesc:af4e6a9fdbb1188fa1c9bbf176c619e3f"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#af4e6a9fdbb1188fa1c9bbf176c619e3f">More...</a><br/></td></tr>
<tr class="separator:af4e6a9fdbb1188fa1c9bbf176c619e3f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7acf823d809b7d2056caed7c6783ba95"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#a7acf823d809b7d2056caed7c6783ba95">operator()</a> (<a class="el" href="classOpenMS_1_1DistanceMatrix.html">DistanceMatrix</a>< <a class="el" href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">Real</a> > &original_distance, std::vector< <a class="el" href="classOpenMS_1_1BinaryTreeNode.html">BinaryTreeNode</a> > &cluster_tree, const <a class="el" href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">Real</a> threshold=1) const </td></tr>
<tr class="memdesc:a7acf823d809b7d2056caed7c6783ba95"><td class="mdescLeft"> </td><td class="mdescRight">clusters the indices according to their respective element distances <a href="#a7acf823d809b7d2056caed7c6783ba95">More...</a><br/></td></tr>
<tr class="separator:a7acf823d809b7d2056caed7c6783ba95"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ClusterFunctor"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ClusterFunctor')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a></td></tr>
<tr class="memitem:af2422628fd52348a0f64d0f5a2df9975 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html#af2422628fd52348a0f64d0f5a2df9975">ClusterFunctor</a> ()</td></tr>
<tr class="memdesc:af2422628fd52348a0f64d0f5a2df9975 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#af2422628fd52348a0f64d0f5a2df9975">More...</a><br/></td></tr>
<tr class="separator:af2422628fd52348a0f64d0f5a2df9975 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1b126f049b60a895a02769ae246be3d3 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html#a1b126f049b60a895a02769ae246be3d3">ClusterFunctor</a> (const <a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a> &source)</td></tr>
<tr class="memdesc:a1b126f049b60a895a02769ae246be3d3 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a1b126f049b60a895a02769ae246be3d3">More...</a><br/></td></tr>
<tr class="separator:a1b126f049b60a895a02769ae246be3d3 inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1deb8d4beff7b61fea04ef6bc372759b inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html#a1deb8d4beff7b61fea04ef6bc372759b">~ClusterFunctor</a> ()</td></tr>
<tr class="memdesc:a1deb8d4beff7b61fea04ef6bc372759b inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a1deb8d4beff7b61fea04ef6bc372759b">More...</a><br/></td></tr>
<tr class="separator:a1deb8d4beff7b61fea04ef6bc372759b inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7bd743ed3bb05541320a9443b469693f inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html#a7bd743ed3bb05541320a9443b469693f">operator=</a> (const <a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a> &source)</td></tr>
<tr class="memdesc:a7bd743ed3bb05541320a9443b469693f inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a7bd743ed3bb05541320a9443b469693f">More...</a><br/></td></tr>
<tr class="separator:a7bd743ed3bb05541320a9443b469693f inherit pub_methods_classOpenMS_1_1ClusterFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a2a106011aec95b2013d7a545f2063d01">More...</a><br/></td></tr>
<tr class="separator:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a19c882d907f90f7f88c7436d82cd2a13">~ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a19c882d907f90f7f88c7436d82cd2a13">More...</a><br/></td></tr>
<tr class="separator:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">setLogType</a> (<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> type) const </td></tr>
<tr class="memdesc:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the progress log that should be used. The default type is NONE! <a href="#acc3538c5284777d8702ccaefeb61e74c">More...</a><br/></td></tr>
<tr class="separator:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a67024cdd5c34ec571baecabd8f783310">getLogType</a> () const </td></tr>
<tr class="memdesc:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Returns the type of progress log being used. <a href="#a67024cdd5c34ec571baecabd8f783310">More...</a><br/></td></tr>
<tr class="separator:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">startProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> begin, <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> end, const <a class="el" href="classOpenMS_1_1String.html">String</a> &label) const </td></tr>
<tr class="memdesc:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Initializes the progress display. <a href="#af1c45ecd71b5041b70319249e8e73591">More...</a><br/></td></tr>
<tr class="separator:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">setProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> value) const </td></tr>
<tr class="memdesc:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the current progress. <a href="#a8852277abd03220cc7b80d6c1bed6fed">More...</a><br/></td></tr>
<tr class="separator:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">endProgress</a> () const </td></tr>
<tr class="memdesc:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Ends the progress display. <a href="#a1cc1012b0cdaea97f58d571af1ff45de">More...</a><br/></td></tr>
<tr class="separator:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:accf0cc572a2a0730ff6c50c776232cbf"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#accf0cc572a2a0730ff6c50c776232cbf">create</a> ()</td></tr>
<tr class="memdesc:accf0cc572a2a0730ff6c50c776232cbf"><td class="mdescLeft"> </td><td class="mdescRight">creates a new instance of a <a class="el" href="classOpenMS_1_1AverageLinkage.html" title="AverageLinkage ClusterMethod. ">AverageLinkage</a> object <a href="#accf0cc572a2a0730ff6c50c776232cbf">More...</a><br/></td></tr>
<tr class="separator:accf0cc572a2a0730ff6c50c776232cbf"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="memdesc:af73fd15708e50e77665070023a09cc87"><td class="mdescLeft"> </td><td class="mdescRight">get the identifier for this object <a href="#af73fd15708e50e77665070023a09cc87">More...</a><br/></td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1ClusterFunctor"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1ClusterFunctor')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1ClusterFunctor"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1ClusterFunctor"><td class="mdescLeft"> </td><td class="mdescRight">registers all derived products <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
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<tr class="memitem:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> { <a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca3ab34dd50405af2d5a62627d572f7860">CMD</a>,
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<tr class="memitem:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">QProgressDialog * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a76072b3919abcf01141ba68da8a001fd">dlg_</a></td></tr>
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<tr class="memitem:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a94eb3ef5ef94b83eb348dd00a2b53119">recursion_depth_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p><a class="el" href="classOpenMS_1_1AverageLinkage.html" title="AverageLinkage ClusterMethod. ">AverageLinkage</a> ClusterMethod. </p>
<p>The details of the method can be found in: Backhaus, Erichson, Plinke, Weiber Multivariate Analysemethoden, Springer 2000 and Ellen M. Voorhees: Implementing agglomerative hierarchic clustering algorithms for use in document retrieval. Inf. Process. Manage. 22(6): 465-476 (1986) </p>
<dl class="section see"><dt>See Also</dt><dd><a class="el" href="classOpenMS_1_1ClusterFunctor.html" title="Base class for cluster functors. ">ClusterFunctor</a> </dd></dl>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<p>default constructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a> </td>
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<p>copy constructor </p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a> </td>
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<p>destructor </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<p>creates a new instance of a <a class="el" href="classOpenMS_1_1AverageLinkage.html" title="AverageLinkage ClusterMethod. ">AverageLinkage</a> object </p>
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<p>get the identifier for this object </p>
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<td class="memname">void operator() </td>
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<p>clusters the indices according to their respective element distances </p>
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<tr><td class="paramname">original_distance</td><td>DistanceMatrix<Real> containing the distances of the elements to be clustered, will be changed during clustering process, make sure to have a copy or be able to redo </td></tr>
<tr><td class="paramname">cluster_tree</td><td>vector< BinaryTreeNode >, represents the clustering, each node contains the next merged clusters (not element indices) and their distance, strict order is kept: left_child < right_child </td></tr>
<tr><td class="paramname">threshold</td><td>Real value, the minimal distance from which on cluster merging is considered unrealistic. By default set to 1, i.e. complete clustering until only one cluster remains </td></tr>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1ClusterFunctor_1_1InsufficientInput.html" title="Exception thrown if not enough data (<2) is used. ">ClusterFunctor::InsufficientInput</a></td><td>thrown if input is <2 The clustering method is average linkage, where the updated distances after merging two clusters are each the average distances between the elements of their clusters. After <code>theshold</code> is exceeded, <code>cluster_tree</code> is filled with dummy clusteringsteps (children: (0,1), distance: -1) to the root. </td></tr>
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<dl class="section see"><dt>See Also</dt><dd><a class="el" href="classOpenMS_1_1ClusterFunctor.html" title="Base class for cluster functors. ">ClusterFunctor</a> , <a class="el" href="classOpenMS_1_1BinaryTreeNode.html" title="Elements of a binary tree used to represent a hierarchical clustering process. ">BinaryTreeNode</a> </dd></dl>
<p>Implements <a class="el" href="classOpenMS_1_1ClusterFunctor.html#a762295d1d68d2e4a1d6b1fe717f5bece">ClusterFunctor</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a>& operator= </td>
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<p>assignment operator </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:28 using doxygen 1.8.5</font></TD>
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