1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236
|
<HTML>
<HEAD>
<TITLE>ConsensusMapNormalizerAlgorithmMedian Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pri-methods">Private Member Functions</a> |
<a href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">ConsensusMapNormalizerAlgorithmMedian Class Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>Algorithms of ConsensusMapNormalizer.
<a href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ConsensusMapNormalizerAlgorithmMedian_8h_source.html">OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h</a>></code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:abbe63ee073ef7f1d7ca3fac09de3e18e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#abbe63ee073ef7f1d7ca3fac09de3e18e">ConsensusMapNormalizerAlgorithmMedian</a> ()</td></tr>
<tr class="memdesc:abbe63ee073ef7f1d7ca3fac09de3e18e"><td class="mdescLeft"> </td><td class="mdescRight">default constructor is not implemented -> private <a href="#abbe63ee073ef7f1d7ca3fac09de3e18e">More...</a><br/></td></tr>
<tr class="separator:abbe63ee073ef7f1d7ca3fac09de3e18e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9e9e76a150c9fed8cc944bccf849bb9c"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#a9e9e76a150c9fed8cc944bccf849bb9c">~ConsensusMapNormalizerAlgorithmMedian</a> ()</td></tr>
<tr class="memdesc:a9e9e76a150c9fed8cc944bccf849bb9c"><td class="mdescLeft"> </td><td class="mdescRight">destructor is not implemented -> private <a href="#a9e9e76a150c9fed8cc944bccf849bb9c">More...</a><br/></td></tr>
<tr class="separator:a9e9e76a150c9fed8cc944bccf849bb9c"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:aba0ea104500ffad7f080d3c48cbac2fe"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#aba0ea104500ffad7f080d3c48cbac2fe">normalizeMaps</a> (<a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &map)</td></tr>
<tr class="memdesc:aba0ea104500ffad7f080d3c48cbac2fe"><td class="mdescLeft"> </td><td class="mdescRight">normalizes the maps of the consensusMap <a href="#aba0ea104500ffad7f080d3c48cbac2fe">More...</a><br/></td></tr>
<tr class="separator:aba0ea104500ffad7f080d3c48cbac2fe"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aef3ea68d497714ffa502074365d4d883"><td class="memItemLeft" align="right" valign="top">static std::vector< <a class="el" href="classdouble.html">double</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#aef3ea68d497714ffa502074365d4d883">computeNormalizationFactors</a> (const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &map)</td></tr>
<tr class="memdesc:aef3ea68d497714ffa502074365d4d883"><td class="mdescLeft"> </td><td class="mdescRight">computes the normalization factors for all maps <a href="#aef3ea68d497714ffa502074365d4d883">More...</a><br/></td></tr>
<tr class="separator:aef3ea68d497714ffa502074365d4d883"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:ae510c9dca5740e4a88a31c16dc9281ac"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#ae510c9dca5740e4a88a31c16dc9281ac">ConsensusMapNormalizerAlgorithmMedian</a> (const <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> &copyin)</td></tr>
<tr class="memdesc:ae510c9dca5740e4a88a31c16dc9281ac"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor is not implemented -> private <a href="#ae510c9dca5740e4a88a31c16dc9281ac">More...</a><br/></td></tr>
<tr class="separator:ae510c9dca5740e4a88a31c16dc9281ac"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a63fd3153408484a5332ad3c4c51b3786"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#a63fd3153408484a5332ad3c4c51b3786">operator=</a> (const <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> &rhs)</td></tr>
<tr class="memdesc:a63fd3153408484a5332ad3c4c51b3786"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator is not implemented -> private <a href="#a63fd3153408484a5332ad3c4c51b3786">More...</a><br/></td></tr>
<tr class="separator:a63fd3153408484a5332ad3c4c51b3786"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Algorithms of ConsensusMapNormalizer. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="ae510c9dca5740e4a88a31c16dc9281ac"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> & </td>
<td class="paramname"><em>copyin</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>copy constructor is not implemented -> private </p>
</div>
</div>
<a class="anchor" id="abbe63ee073ef7f1d7ca3fac09de3e18e"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>default constructor is not implemented -> private </p>
</div>
</div>
<a class="anchor" id="a9e9e76a150c9fed8cc944bccf849bb9c"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>destructor is not implemented -> private </p>
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="aef3ea68d497714ffa502074365d4d883"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static std::vector<<a class="el" href="classdouble.html">double</a>> computeNormalizationFactors </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & </td>
<td class="paramname"><em>map</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>computes the normalization factors for all maps </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">map</td><td><a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> </td></tr>
</table>
</dd>
</dl>
</div>
</div>
<a class="anchor" id="aba0ea104500ffad7f080d3c48cbac2fe"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static void normalizeMaps </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & </td>
<td class="paramname"><em>map</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>normalizes the maps of the consensusMap </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">map</td><td><a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> </td></tr>
</table>
</dd>
</dl>
</div>
</div>
<a class="anchor" id="a63fd3153408484a5332ad3c4c51b3786"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a>& operator= </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>assignment operator is not implemented -> private </p>
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|