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<HTML>
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<TITLE>ConsensusXMLFile Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html">ConsensusXMLFile</a></li> </ul>
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<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pro-methods">Protected Member Functions</a> |
<a href="#pro-attribs">Protected Attributes</a> |
<a href="classOpenMS_1_1ConsensusXMLFile-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">ConsensusXMLFile Class Reference<div class="ingroups"><a class="el" href="group__FileIO.html">File IO</a></div></div> </div>
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<div class="contents">
<p>This class provides Input functionality for ConsensusMaps and Output functionality for alignments and quantitation.
<a href="classOpenMS_1_1ConsensusXMLFile.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ConsensusXMLFile_8h_source.html">OpenMS/FORMAT/ConsensusXMLFile.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for ConsensusXMLFile:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1ConsensusXMLFile.png" usemap="#ConsensusXMLFile_map" alt=""/>
<map id="ConsensusXMLFile_map" name="ConsensusXMLFile_map">
<area href="classOpenMS_1_1Internal_1_1XMLHandler.html" title="Base class for XML handlers. " alt="XMLHandler" shape="rect" coords="0,56,122,80"/>
<area href="classOpenMS_1_1Internal_1_1XMLFile.html" title="Base class for loading/storing XML files that have a handler derived from XMLHandler. " alt="XMLFile" shape="rect" coords="132,56,254,80"/>
<area href="classOpenMS_1_1ProgressLogger.html" title="Base class for all classes that want to report their progess. " alt="ProgressLogger" shape="rect" coords="264,56,386,80"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ae63d0a5f575fde9fabc86d11e02c1b70"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ae63d0a5f575fde9fabc86d11e02c1b70">ConsensusXMLFile</a> ()</td></tr>
<tr class="memdesc:ae63d0a5f575fde9fabc86d11e02c1b70"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#ae63d0a5f575fde9fabc86d11e02c1b70">More...</a><br/></td></tr>
<tr class="separator:ae63d0a5f575fde9fabc86d11e02c1b70"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5e6afb69cde8c0b4f228bfb6e3314c91"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a5e6afb69cde8c0b4f228bfb6e3314c91">~ConsensusXMLFile</a> ()</td></tr>
<tr class="memdesc:a5e6afb69cde8c0b4f228bfb6e3314c91"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a5e6afb69cde8c0b4f228bfb6e3314c91">More...</a><br/></td></tr>
<tr class="separator:a5e6afb69cde8c0b4f228bfb6e3314c91"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a426f58285a6c7a6b81346bcc4cf58e2a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a426f58285a6c7a6b81346bcc4cf58e2a">load</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &map)</td></tr>
<tr class="memdesc:a426f58285a6c7a6b81346bcc4cf58e2a"><td class="mdescLeft"> </td><td class="mdescRight">Loads a consensus map from file and calls updateRanges. <a href="#a426f58285a6c7a6b81346bcc4cf58e2a">More...</a><br/></td></tr>
<tr class="separator:a426f58285a6c7a6b81346bcc4cf58e2a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af72f4966d65af7a802025d8640a0e570"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#af72f4966d65af7a802025d8640a0e570">store</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &consensus_map)</td></tr>
<tr class="memdesc:af72f4966d65af7a802025d8640a0e570"><td class="mdescLeft"> </td><td class="mdescRight">Stores a consensus map to file. <a href="#af72f4966d65af7a802025d8640a0e570">More...</a><br/></td></tr>
<tr class="separator:af72f4966d65af7a802025d8640a0e570"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a819235ed2844f03df53f4983a7008f28"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a819235ed2844f03df53f4983a7008f28">getOptions</a> ()</td></tr>
<tr class="memdesc:a819235ed2844f03df53f4983a7008f28"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the options for loading/storing. <a href="#a819235ed2844f03df53f4983a7008f28">More...</a><br/></td></tr>
<tr class="separator:a819235ed2844f03df53f4983a7008f28"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a5fa0d33e72b9dc6624eeb42c2ca6955a">getOptions</a> () const </td></tr>
<tr class="memdesc:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the options for loading/storing. <a href="#a5fa0d33e72b9dc6624eeb42c2ca6955a">More...</a><br/></td></tr>
<tr class="separator:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1Internal_1_1XMLHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a></td></tr>
<tr class="memitem:a1f2a4ba30e2b659550286b460e842503 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a1f2a4ba30e2b659550286b460e842503">XMLHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, const <a class="el" href="classOpenMS_1_1String.html">String</a> &version)</td></tr>
<tr class="memdesc:a1f2a4ba30e2b659550286b460e842503 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a1f2a4ba30e2b659550286b460e842503">More...</a><br/></td></tr>
<tr class="separator:a1f2a4ba30e2b659550286b460e842503 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae466820b5ac9b008d33937e7dc7a180b inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ae466820b5ac9b008d33937e7dc7a180b">~XMLHandler</a> ()</td></tr>
<tr class="memdesc:ae466820b5ac9b008d33937e7dc7a180b inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#ae466820b5ac9b008d33937e7dc7a180b">More...</a><br/></td></tr>
<tr class="separator:ae466820b5ac9b008d33937e7dc7a180b inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad20897c5c8bd47f5d4005989bead0e55 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad20897c5c8bd47f5d4005989bead0e55">reset</a> ()</td></tr>
<tr class="memdesc:ad20897c5c8bd47f5d4005989bead0e55 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Release internal memory used for parsing (call. <a href="#ad20897c5c8bd47f5d4005989bead0e55">More...</a><br/></td></tr>
<tr class="separator:ad20897c5c8bd47f5d4005989bead0e55 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8b468975f6696641be7ef3c4de304cf9 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8b468975f6696641be7ef3c4de304cf9">fatalError</a> (<a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> mode, const <a class="el" href="classOpenMS_1_1String.html">String</a> &msg, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> line=0, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> column=0) const </td></tr>
<tr class="memdesc:a8b468975f6696641be7ef3c4de304cf9 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Fatal error handler. Throws a ParseError exception. <a href="#a8b468975f6696641be7ef3c4de304cf9">More...</a><br/></td></tr>
<tr class="separator:a8b468975f6696641be7ef3c4de304cf9 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9d340a52e4146988835f8f1ac9efab07 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a9d340a52e4146988835f8f1ac9efab07">error</a> (<a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> mode, const <a class="el" href="classOpenMS_1_1String.html">String</a> &msg, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> line=0, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> column=0) const </td></tr>
<tr class="memdesc:a9d340a52e4146988835f8f1ac9efab07 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Error handler for recoverable errors. <a href="#a9d340a52e4146988835f8f1ac9efab07">More...</a><br/></td></tr>
<tr class="separator:a9d340a52e4146988835f8f1ac9efab07 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02ac5e91757ddd89078f7a04386b95f1 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a02ac5e91757ddd89078f7a04386b95f1">warning</a> (<a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> mode, const <a class="el" href="classOpenMS_1_1String.html">String</a> &msg, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> line=0, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> column=0) const </td></tr>
<tr class="memdesc:a02ac5e91757ddd89078f7a04386b95f1 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Warning handler. <a href="#a02ac5e91757ddd89078f7a04386b95f1">More...</a><br/></td></tr>
<tr class="separator:a02ac5e91757ddd89078f7a04386b95f1 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac758e589cc142657a0ff748a49038298 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ac758e589cc142657a0ff748a49038298">writeTo</a> (std::ostream &)</td></tr>
<tr class="memdesc:ac758e589cc142657a0ff748a49038298 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Writes the contents to a stream. <a href="#ac758e589cc142657a0ff748a49038298">More...</a><br/></td></tr>
<tr class="separator:ac758e589cc142657a0ff748a49038298 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0bc03d238ded5afdd53da91dbec5a9a4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a0bc03d238ded5afdd53da91dbec5a9a4">errorString</a> ()</td></tr>
<tr class="memdesc:a0bc03d238ded5afdd53da91dbec5a9a4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Returns the last error description. <a href="#a0bc03d238ded5afdd53da91dbec5a9a4">More...</a><br/></td></tr>
<tr class="separator:a0bc03d238ded5afdd53da91dbec5a9a4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a479fa8182f39759e3b6c800419b7fe35 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a479fa8182f39759e3b6c800419b7fe35">fatalError</a> (const xercesc::SAXParseException &exception)</td></tr>
<tr class="separator:a479fa8182f39759e3b6c800419b7fe35 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae4ec481066391f85153ac035f3184178 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ae4ec481066391f85153ac035f3184178">error</a> (const xercesc::SAXParseException &exception)</td></tr>
<tr class="separator:ae4ec481066391f85153ac035f3184178 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af86a807dd4b1ed6f4ba006b9bcd24763 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#af86a807dd4b1ed6f4ba006b9bcd24763">warning</a> (const xercesc::SAXParseException &exception)</td></tr>
<tr class="separator:af86a807dd4b1ed6f4ba006b9bcd24763 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a5288a663fb130ba112c205bd7c556fd4">XMLFile</a> ()</td></tr>
<tr class="memdesc:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a5288a663fb130ba112c205bd7c556fd4">More...</a><br/></td></tr>
<tr class="separator:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ab6a2f018df297124fba778512994282a">XMLFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &schema_location, const <a class="el" href="classOpenMS_1_1String.html">String</a> &version)</td></tr>
<tr class="memdesc:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Constructor that sets the schema location. <a href="#ab6a2f018df297124fba778512994282a">More...</a><br/></td></tr>
<tr class="separator:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ae64064342fc97bdd2008c5a91cd6d9de">~XMLFile</a> ()</td></tr>
<tr class="memdesc:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#ae64064342fc97bdd2008c5a91cd6d9de">More...</a><br/></td></tr>
<tr class="separator:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a2f3216da86d8ced03f1b102a5c2e886c">isValid</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, std::ostream &os=std::cerr)</td></tr>
<tr class="memdesc:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Checks if a file validates against the XML schema. <a href="#a2f3216da86d8ced03f1b102a5c2e886c">More...</a><br/></td></tr>
<tr class="separator:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ae6b3b4b6857bc1987282e2f29611dd41">getVersion</a> () const </td></tr>
<tr class="memdesc:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">return the version of the schema <a href="#ae6b3b4b6857bc1987282e2f29611dd41">More...</a><br/></td></tr>
<tr class="separator:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a2a106011aec95b2013d7a545f2063d01">More...</a><br/></td></tr>
<tr class="separator:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a19c882d907f90f7f88c7436d82cd2a13">~ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a19c882d907f90f7f88c7436d82cd2a13">More...</a><br/></td></tr>
<tr class="separator:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">setLogType</a> (<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> type) const </td></tr>
<tr class="memdesc:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the progress log that should be used. The default type is NONE! <a href="#acc3538c5284777d8702ccaefeb61e74c">More...</a><br/></td></tr>
<tr class="separator:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a67024cdd5c34ec571baecabd8f783310">getLogType</a> () const </td></tr>
<tr class="memdesc:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Returns the type of progress log being used. <a href="#a67024cdd5c34ec571baecabd8f783310">More...</a><br/></td></tr>
<tr class="separator:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">startProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> begin, <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> end, const <a class="el" href="classOpenMS_1_1String.html">String</a> &label) const </td></tr>
<tr class="memdesc:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Initializes the progress display. <a href="#af1c45ecd71b5041b70319249e8e73591">More...</a><br/></td></tr>
<tr class="separator:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">setProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> value) const </td></tr>
<tr class="memdesc:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Sets the current progress. <a href="#a8852277abd03220cc7b80d6c1bed6fed">More...</a><br/></td></tr>
<tr class="separator:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">endProgress</a> () const </td></tr>
<tr class="memdesc:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft"> </td><td class="mdescRight">Ends the progress display. <a href="#a1cc1012b0cdaea97f58d571af1ff45de">More...</a><br/></td></tr>
<tr class="separator:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a66e33712cdc523d0d7a516c760933174"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a66e33712cdc523d0d7a516c760933174">endElement</a> (const XMLCh *const , const XMLCh *const , const XMLCh *const qname)</td></tr>
<tr class="memdesc:a66e33712cdc523d0d7a516c760933174"><td class="mdescLeft"> </td><td class="mdescRight">Parsing method for closing tags. <a href="#a66e33712cdc523d0d7a516c760933174">More...</a><br/></td></tr>
<tr class="separator:a66e33712cdc523d0d7a516c760933174"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a40f650be05ac6391244e5aabda5fc682"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a40f650be05ac6391244e5aabda5fc682">startElement</a> (const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)</td></tr>
<tr class="memdesc:a40f650be05ac6391244e5aabda5fc682"><td class="mdescLeft"> </td><td class="mdescRight">Parsing method for opening tags. <a href="#a40f650be05ac6391244e5aabda5fc682">More...</a><br/></td></tr>
<tr class="separator:a40f650be05ac6391244e5aabda5fc682"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad14063bc858ff5ef2f218f9ec3efa1a6"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ad14063bc858ff5ef2f218f9ec3efa1a6">characters</a> (const XMLCh *const chars, const XMLSize_t length)</td></tr>
<tr class="memdesc:ad14063bc858ff5ef2f218f9ec3efa1a6"><td class="mdescLeft"> </td><td class="mdescRight">Parsing method for character data. <a href="#ad14063bc858ff5ef2f218f9ec3efa1a6">More...</a><br/></td></tr>
<tr class="separator:ad14063bc858ff5ef2f218f9ec3efa1a6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8ee6dd3a86aa5551259a1ddc8752e71b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a8ee6dd3a86aa5551259a1ddc8752e71b">writePeptideIdentification_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, std::ostream &os, const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> &id, const <a class="el" href="classOpenMS_1_1String.html">String</a> &tag_name, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> indentation_level)</td></tr>
<tr class="memdesc:a8ee6dd3a86aa5551259a1ddc8752e71b"><td class="mdescLeft"> </td><td class="mdescRight">Writes a peptide identification to a stream (for assigned/unassigned peptide identifications) <a href="#a8ee6dd3a86aa5551259a1ddc8752e71b">More...</a><br/></td></tr>
<tr class="separator:a8ee6dd3a86aa5551259a1ddc8752e71b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1Internal_1_1XMLHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a></td></tr>
<tr class="memitem:afa42ec5acb52289d25d125a69ca28611 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#afa42ec5acb52289d25d125a69ca28611">equal_</a> (const XMLCh *a, const XMLCh *b)</td></tr>
<tr class="memdesc:afa42ec5acb52289d25d125a69ca28611 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Returns if two xerces strings are equal. <a href="#afa42ec5acb52289d25d125a69ca28611">More...</a><br/></td></tr>
<tr class="separator:afa42ec5acb52289d25d125a69ca28611 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2036f384f9e7f1259f0c147d24100a37 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a2036f384f9e7f1259f0c147d24100a37">writeUserParam_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &tag_name, std::ostream &os, const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &meta, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> indent) const </td></tr>
<tr class="memdesc:a2036f384f9e7f1259f0c147d24100a37 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Writes the content of <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> to the file. <a href="#a2036f384f9e7f1259f0c147d24100a37">More...</a><br/></td></tr>
<tr class="separator:a2036f384f9e7f1259f0c147d24100a37 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a666aacffa457b641218b98fa7b47071e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a666aacffa457b641218b98fa7b47071e">asInt_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &in)</td></tr>
<tr class="memdesc:a666aacffa457b641218b98fa7b47071e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> to an integer value. <a href="#a666aacffa457b641218b98fa7b47071e">More...</a><br/></td></tr>
<tr class="separator:a666aacffa457b641218b98fa7b47071e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acce0b8fbe7a5a90972407cc4ec2ae742 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#acce0b8fbe7a5a90972407cc4ec2ae742">asInt_</a> (const XMLCh *in)</td></tr>
<tr class="memdesc:acce0b8fbe7a5a90972407cc4ec2ae742 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a Xerces string to an integer value. <a href="#acce0b8fbe7a5a90972407cc4ec2ae742">More...</a><br/></td></tr>
<tr class="separator:acce0b8fbe7a5a90972407cc4ec2ae742 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8cec7757132342e4d52771f09113378b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8cec7757132342e4d52771f09113378b">asUInt_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &in)</td></tr>
<tr class="memdesc:a8cec7757132342e4d52771f09113378b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> to an unsigned integer value. <a href="#a8cec7757132342e4d52771f09113378b">More...</a><br/></td></tr>
<tr class="separator:a8cec7757132342e4d52771f09113378b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a48e8be8cff3d25b265c4f3b6a1c446b0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a48e8be8cff3d25b265c4f3b6a1c446b0">asDouble_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &in)</td></tr>
<tr class="memdesc:a48e8be8cff3d25b265c4f3b6a1c446b0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> to a double value. <a href="#a48e8be8cff3d25b265c4f3b6a1c446b0">More...</a><br/></td></tr>
<tr class="separator:a48e8be8cff3d25b265c4f3b6a1c446b0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa6a2e65ba3dc9581e4cb5a719ddace92 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aa6a2e65ba3dc9581e4cb5a719ddace92">asFloat_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &in)</td></tr>
<tr class="memdesc:aa6a2e65ba3dc9581e4cb5a719ddace92 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> to a float value. <a href="#aa6a2e65ba3dc9581e4cb5a719ddace92">More...</a><br/></td></tr>
<tr class="separator:aa6a2e65ba3dc9581e4cb5a719ddace92 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5dc26987442a8a81af7bbd43e2e48f4a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a5dc26987442a8a81af7bbd43e2e48f4a">asBool_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &in)</td></tr>
<tr class="memdesc:a5dc26987442a8a81af7bbd43e2e48f4a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a string to a boolean value. <a href="#a5dc26987442a8a81af7bbd43e2e48f4a">More...</a><br/></td></tr>
<tr class="separator:a5dc26987442a8a81af7bbd43e2e48f4a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae9988608535348608067112395e56562 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DateTime.html">DateTime</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ae9988608535348608067112395e56562">asDateTime_</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> date_string)</td></tr>
<tr class="memdesc:ae9988608535348608067112395e56562 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Conversion of a xs:datetime string to a DataTime value. <a href="#ae9988608535348608067112395e56562">More...</a><br/></td></tr>
<tr class="separator:ae9988608535348608067112395e56562 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9e474cc66784ceba31591381c45a7fda inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a9e474cc66784ceba31591381c45a7fda">attributeAsString_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a9e474cc66784ceba31591381c45a7fda inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a>. <a href="#a9e474cc66784ceba31591381c45a7fda">More...</a><br/></td></tr>
<tr class="separator:a9e474cc66784ceba31591381c45a7fda inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a72fc926d019cece725e2acca29ba6bd7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a72fc926d019cece725e2acca29ba6bd7">attributeAsInt_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a72fc926d019cece725e2acca29ba6bd7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a Int. <a href="#a72fc926d019cece725e2acca29ba6bd7">More...</a><br/></td></tr>
<tr class="separator:a72fc926d019cece725e2acca29ba6bd7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8b86d61a994bea8fc963fb5ba58b53cc inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8b86d61a994bea8fc963fb5ba58b53cc">attributeAsDouble_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a8b86d61a994bea8fc963fb5ba58b53cc inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a DoubleReal. <a href="#a8b86d61a994bea8fc963fb5ba58b53cc">More...</a><br/></td></tr>
<tr class="separator:a8b86d61a994bea8fc963fb5ba58b53cc inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6e998b95ac924dce7c79c389e0c7515a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DoubleList.html">DoubleList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6e998b95ac924dce7c79c389e0c7515a">attributeAsDoubleList_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a6e998b95ac924dce7c79c389e0c7515a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1DoubleList.html" title="DoubleReal list. ">DoubleList</a>. <a href="#a6e998b95ac924dce7c79c389e0c7515a">More...</a><br/></td></tr>
<tr class="separator:a6e998b95ac924dce7c79c389e0c7515a inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc312cc6190151275be5f511d36ca8d4 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1IntList.html">IntList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#abc312cc6190151275be5f511d36ca8d4">attributeAsIntList_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:abc312cc6190151275be5f511d36ca8d4 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to an <a class="el" href="classOpenMS_1_1IntList.html" title="Int list. ">IntList</a>. <a href="#abc312cc6190151275be5f511d36ca8d4">More...</a><br/></td></tr>
<tr class="separator:abc312cc6190151275be5f511d36ca8d4 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa4b445d152e82df2f8c8254d16f6215b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aa4b445d152e82df2f8c8254d16f6215b">attributeAsStringList_</a> (const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:aa4b445d152e82df2f8c8254d16f6215b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to an <a class="el" href="classOpenMS_1_1StringList.html" title="String list. ">StringList</a>. <a href="#aa4b445d152e82df2f8c8254d16f6215b">More...</a><br/></td></tr>
<tr class="separator:aa4b445d152e82df2f8c8254d16f6215b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c08febb7e7f52f2be01217ab2560178 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a7c08febb7e7f52f2be01217ab2560178">optionalAttributeAsString_</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a7c08febb7e7f52f2be01217ab2560178 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> <em>value</em> if the attribute is present. <a href="#a7c08febb7e7f52f2be01217ab2560178">More...</a><br/></td></tr>
<tr class="separator:a7c08febb7e7f52f2be01217ab2560178 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abad7c51846f619044d97dcd4b2dc1a58 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#abad7c51846f619044d97dcd4b2dc1a58">optionalAttributeAsInt_</a> (<a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:abad7c51846f619044d97dcd4b2dc1a58 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the Int <em>value</em> if the attribute is present. <a href="#abad7c51846f619044d97dcd4b2dc1a58">More...</a><br/></td></tr>
<tr class="separator:abad7c51846f619044d97dcd4b2dc1a58 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba139b5879b8b0fe8e67d0630592c092 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aba139b5879b8b0fe8e67d0630592c092">optionalAttributeAsUInt_</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:aba139b5879b8b0fe8e67d0630592c092 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the UInt <em>value</em> if the attribute is present. <a href="#aba139b5879b8b0fe8e67d0630592c092">More...</a><br/></td></tr>
<tr class="separator:aba139b5879b8b0fe8e67d0630592c092 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a958ee97861f22f49d562abce6e258aa1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a958ee97861f22f49d562abce6e258aa1">optionalAttributeAsDouble_</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a958ee97861f22f49d562abce6e258aa1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the DoubleReal <em>value</em> if the attribute is present. <a href="#a958ee97861f22f49d562abce6e258aa1">More...</a><br/></td></tr>
<tr class="separator:a958ee97861f22f49d562abce6e258aa1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a50fb629d6e3a9db12a5858916616edfa inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a50fb629d6e3a9db12a5858916616edfa">optionalAttributeAsDoubleList_</a> (<a class="el" href="classOpenMS_1_1DoubleList.html">DoubleList</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a50fb629d6e3a9db12a5858916616edfa inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1DoubleList.html" title="DoubleReal list. ">DoubleList</a> <em>value</em> if the attribute is present. <a href="#a50fb629d6e3a9db12a5858916616edfa">More...</a><br/></td></tr>
<tr class="separator:a50fb629d6e3a9db12a5858916616edfa inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a05c8ac2143fb0e36774bd0973326c4f1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a05c8ac2143fb0e36774bd0973326c4f1">optionalAttributeAsStringList_</a> (<a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:a05c8ac2143fb0e36774bd0973326c4f1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1StringList.html" title="String list. ">StringList</a> <em>value</em> if the attribute is present. <a href="#a05c8ac2143fb0e36774bd0973326c4f1">More...</a><br/></td></tr>
<tr class="separator:a05c8ac2143fb0e36774bd0973326c4f1 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab39e3f1ff99a6e677b0c918266645673 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ab39e3f1ff99a6e677b0c918266645673">optionalAttributeAsIntList_</a> (<a class="el" href="classOpenMS_1_1IntList.html">IntList</a> &value, const xercesc::Attributes &a, const char *name) const </td></tr>
<tr class="memdesc:ab39e3f1ff99a6e677b0c918266645673 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1IntList.html" title="Int list. ">IntList</a> <em>value</em> if the attribute is present. <a href="#ab39e3f1ff99a6e677b0c918266645673">More...</a><br/></td></tr>
<tr class="separator:ab39e3f1ff99a6e677b0c918266645673 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad63dfd11e1161067d1634f7b92bee573 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad63dfd11e1161067d1634f7b92bee573">attributeAsString_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:ad63dfd11e1161067d1634f7b92bee573 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a>. <a href="#ad63dfd11e1161067d1634f7b92bee573">More...</a><br/></td></tr>
<tr class="separator:ad63dfd11e1161067d1634f7b92bee573 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1c6de5bf11e4cb7ec9aa007da5c163f inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#af1c6de5bf11e4cb7ec9aa007da5c163f">attributeAsInt_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:af1c6de5bf11e4cb7ec9aa007da5c163f inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a Int. <a href="#af1c6de5bf11e4cb7ec9aa007da5c163f">More...</a><br/></td></tr>
<tr class="separator:af1c6de5bf11e4cb7ec9aa007da5c163f inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1b66b54ff53c138638bebea5bea36cf9 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a1b66b54ff53c138638bebea5bea36cf9">attributeAsDouble_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a1b66b54ff53c138638bebea5bea36cf9 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a DoubleReal. <a href="#a1b66b54ff53c138638bebea5bea36cf9">More...</a><br/></td></tr>
<tr class="separator:a1b66b54ff53c138638bebea5bea36cf9 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a54f3fb485e059c3cb16afc2235635fc0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DoubleList.html">DoubleList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a54f3fb485e059c3cb16afc2235635fc0">attributeAsDoubleList_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a54f3fb485e059c3cb16afc2235635fc0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1DoubleList.html" title="DoubleReal list. ">DoubleList</a>. <a href="#a54f3fb485e059c3cb16afc2235635fc0">More...</a><br/></td></tr>
<tr class="separator:a54f3fb485e059c3cb16afc2235635fc0 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5dc4ddd6685eb948019e1537d6fe9034 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1IntList.html">IntList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a5dc4ddd6685eb948019e1537d6fe9034">attributeAsIntList_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a5dc4ddd6685eb948019e1537d6fe9034 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1IntList.html" title="Int list. ">IntList</a>. <a href="#a5dc4ddd6685eb948019e1537d6fe9034">More...</a><br/></td></tr>
<tr class="separator:a5dc4ddd6685eb948019e1537d6fe9034 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac65e3edffffcaee33d18d735b8295661 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ac65e3edffffcaee33d18d735b8295661">attributeAsStringList_</a> (const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:ac65e3edffffcaee33d18d735b8295661 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Converts an attribute to a <a class="el" href="classOpenMS_1_1StringList.html" title="String list. ">StringList</a>. <a href="#ac65e3edffffcaee33d18d735b8295661">More...</a><br/></td></tr>
<tr class="separator:ac65e3edffffcaee33d18d735b8295661 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8faacc5e743fd40965b5088409b2c22b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8faacc5e743fd40965b5088409b2c22b">optionalAttributeAsString_</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a8faacc5e743fd40965b5088409b2c22b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> <em>value</em> if the attribute is present. <a href="#a8faacc5e743fd40965b5088409b2c22b">More...</a><br/></td></tr>
<tr class="separator:a8faacc5e743fd40965b5088409b2c22b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2e667f2db91d4711dc89e63d61fbc42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a2e667f2db91d4711dc89e63d61fbc42d">optionalAttributeAsInt_</a> (<a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a2e667f2db91d4711dc89e63d61fbc42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the Int <em>value</em> if the attribute is present. <a href="#a2e667f2db91d4711dc89e63d61fbc42d">More...</a><br/></td></tr>
<tr class="separator:a2e667f2db91d4711dc89e63d61fbc42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1216a9eaddc5ea6a5aec32a2f63f42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#af1216a9eaddc5ea6a5aec32a2f63f42d">optionalAttributeAsUInt_</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:af1216a9eaddc5ea6a5aec32a2f63f42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the UInt <em>value</em> if the attribute is present. <a href="#af1216a9eaddc5ea6a5aec32a2f63f42d">More...</a><br/></td></tr>
<tr class="separator:af1216a9eaddc5ea6a5aec32a2f63f42d inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc6bb4fc8db1bf5653be91ad6ffa92d7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#acc6bb4fc8db1bf5653be91ad6ffa92d7">optionalAttributeAsDouble_</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:acc6bb4fc8db1bf5653be91ad6ffa92d7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the DoubleReal <em>value</em> if the attribute is present. <a href="#acc6bb4fc8db1bf5653be91ad6ffa92d7">More...</a><br/></td></tr>
<tr class="separator:acc6bb4fc8db1bf5653be91ad6ffa92d7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2363e021cb7d1b71e437f3e0e90160de inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a2363e021cb7d1b71e437f3e0e90160de">optionalAttributeAsDoubleList_</a> (<a class="el" href="classOpenMS_1_1DoubleList.html">DoubleList</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a2363e021cb7d1b71e437f3e0e90160de inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1DoubleList.html" title="DoubleReal list. ">DoubleList</a> <em>value</em> if the attribute is present. <a href="#a2363e021cb7d1b71e437f3e0e90160de">More...</a><br/></td></tr>
<tr class="separator:a2363e021cb7d1b71e437f3e0e90160de inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a54465788da22f2da8b11a237e470a27e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a54465788da22f2da8b11a237e470a27e">optionalAttributeAsIntList_</a> (<a class="el" href="classOpenMS_1_1IntList.html">IntList</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:a54465788da22f2da8b11a237e470a27e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1IntList.html" title="Int list. ">IntList</a> <em>value</em> if the attribute is present. <a href="#a54465788da22f2da8b11a237e470a27e">More...</a><br/></td></tr>
<tr class="separator:a54465788da22f2da8b11a237e470a27e inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1084b998ce1559ff34c1febcd8193fb inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#af1084b998ce1559ff34c1febcd8193fb">optionalAttributeAsStringList_</a> (<a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &value, const xercesc::Attributes &a, const XMLCh *name) const </td></tr>
<tr class="memdesc:af1084b998ce1559ff34c1febcd8193fb inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assigns the attribute content to the <a class="el" href="classOpenMS_1_1StringList.html" title="String list. ">StringList</a> <em>value</em> if the attribute is present. <a href="#af1084b998ce1559ff34c1febcd8193fb">More...</a><br/></td></tr>
<tr class="separator:af1084b998ce1559ff34c1febcd8193fb inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab42b06789e80b05f0b754201cb1deccc inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ab42b06789e80b05f0b754201cb1deccc">cvStringToEnum_</a> (const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> section, const <a class="el" href="classOpenMS_1_1String.html">String</a> &term, const char *message, const <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> result_on_error=0)</td></tr>
<tr class="separator:ab42b06789e80b05f0b754201cb1deccc inherit pro_methods_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ab08cc6e67bde4d478045ece950deb32b">parse_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a> *handler)</td></tr>
<tr class="memdesc:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Parses the XML file given by <code>filename</code> using the handler given by <code>handler</code>. <a href="#ab08cc6e67bde4d478045ece950deb32b">More...</a><br/></td></tr>
<tr class="separator:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#aa99a8fa1726ecc3b865167eea1c17db7">save_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a> *handler) const </td></tr>
<tr class="memdesc:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Stores the contents of the XML handler given by <code>handler</code> in the file given by <code>filename</code>. <a href="#aa99a8fa1726ecc3b865167eea1c17db7">More...</a><br/></td></tr>
<tr class="separator:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a97478c2a7b5ed960dae2ac5da0c03045 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a97478c2a7b5ed960dae2ac5da0c03045">enforceEncoding_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &encoding)</td></tr>
<tr class="separator:a97478c2a7b5ed960dae2ac5da0c03045 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a654a0b5941d937e303c64bc9e732baec"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a654a0b5941d937e303c64bc9e732baec">options_</a></td></tr>
<tr class="memdesc:a654a0b5941d937e303c64bc9e732baec"><td class="mdescLeft"> </td><td class="mdescRight">Options that can be set. <a href="#a654a0b5941d937e303c64bc9e732baec">More...</a><br/></td></tr>
<tr class="separator:a654a0b5941d937e303c64bc9e732baec"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a23a7355f9a0e61f3990a763f0fa7c528"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a23a7355f9a0e61f3990a763f0fa7c528">last_meta_</a></td></tr>
<tr class="memdesc:a23a7355f9a0e61f3990a763f0fa7c528"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to last read object as a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a>, or null. <a href="#a23a7355f9a0e61f3990a763f0fa7c528">More...</a><br/></td></tr>
<tr class="separator:a23a7355f9a0e61f3990a763f0fa7c528"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5e548fc9726de1f64e315fa215f4de19"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProteinIdentification.html">ProteinIdentification</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a5e548fc9726de1f64e315fa215f4de19">prot_id_</a></td></tr>
<tr class="memdesc:a5e548fc9726de1f64e315fa215f4de19"><td class="mdescLeft"> </td><td class="mdescRight">Temporary protein <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>. <a href="#a5e548fc9726de1f64e315fa215f4de19">More...</a><br/></td></tr>
<tr class="separator:a5e548fc9726de1f64e315fa215f4de19"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab59916b51e0840799c0a78ed04d7f859"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ab59916b51e0840799c0a78ed04d7f859">pep_id_</a></td></tr>
<tr class="memdesc:ab59916b51e0840799c0a78ed04d7f859"><td class="mdescLeft"> </td><td class="mdescRight">Temporary peptide <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>. <a href="#ab59916b51e0840799c0a78ed04d7f859">More...</a><br/></td></tr>
<tr class="separator:ab59916b51e0840799c0a78ed04d7f859"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a855d1cd159f5a8295c3d6be4327a1542"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a855d1cd159f5a8295c3d6be4327a1542">prot_hit_</a></td></tr>
<tr class="memdesc:a855d1cd159f5a8295c3d6be4327a1542"><td class="mdescLeft"> </td><td class="mdescRight">Temporary protein hit. <a href="#a855d1cd159f5a8295c3d6be4327a1542">More...</a><br/></td></tr>
<tr class="separator:a855d1cd159f5a8295c3d6be4327a1542"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a963bc7db375d58bd099601271cc7a011"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a963bc7db375d58bd099601271cc7a011">pep_hit_</a></td></tr>
<tr class="memdesc:a963bc7db375d58bd099601271cc7a011"><td class="mdescLeft"> </td><td class="mdescRight">Temporary peptide hit. <a href="#a963bc7db375d58bd099601271cc7a011">More...</a><br/></td></tr>
<tr class="separator:a963bc7db375d58bd099601271cc7a011"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad23fa42c762a035786d56a07e2f1ea16"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ad23fa42c762a035786d56a07e2f1ea16">proteinid_to_accession_</a></td></tr>
<tr class="memdesc:ad23fa42c762a035786d56a07e2f1ea16"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from protein id to accession. <a href="#ad23fa42c762a035786d56a07e2f1ea16">More...</a><br/></td></tr>
<tr class="separator:ad23fa42c762a035786d56a07e2f1ea16"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a15e5e3bc144b437972738bf1d168b741"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a15e5e3bc144b437972738bf1d168b741">accession_to_id_</a></td></tr>
<tr class="memdesc:a15e5e3bc144b437972738bf1d168b741"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from search identifier concatenated with protein accession to id. <a href="#a15e5e3bc144b437972738bf1d168b741">More...</a><br/></td></tr>
<tr class="separator:a15e5e3bc144b437972738bf1d168b741"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a65fe117944045e89e6add20e3f7ba912"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a65fe117944045e89e6add20e3f7ba912">identifier_id_</a></td></tr>
<tr class="memdesc:a65fe117944045e89e6add20e3f7ba912"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from identification run identifier to file xs:id (for linking peptide identifications to the corresponding run) <a href="#a65fe117944045e89e6add20e3f7ba912">More...</a><br/></td></tr>
<tr class="separator:a65fe117944045e89e6add20e3f7ba912"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3b0075b28e6591f39fafa2720002c5d6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a3b0075b28e6591f39fafa2720002c5d6">id_identifier_</a></td></tr>
<tr class="memdesc:a3b0075b28e6591f39fafa2720002c5d6"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from file xs:id to identification run identifier (for linking peptide identifications to the corresponding run) <a href="#a3b0075b28e6591f39fafa2720002c5d6">More...</a><br/></td></tr>
<tr class="separator:a3b0075b28e6591f39fafa2720002c5d6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a22cfe808d1f3b2c6b9f97ccde38e6ec4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html">ProteinIdentification::SearchParameters</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a22cfe808d1f3b2c6b9f97ccde38e6ec4">search_param_</a></td></tr>
<tr class="memdesc:a22cfe808d1f3b2c6b9f97ccde38e6ec4"><td class="mdescLeft"> </td><td class="mdescRight">Temporary search parameters file. <a href="#a22cfe808d1f3b2c6b9f97ccde38e6ec4">More...</a><br/></td></tr>
<tr class="separator:a22cfe808d1f3b2c6b9f97ccde38e6ec4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8e17f7a3517f0ea0f31fd4c9d7608e3c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a8e17f7a3517f0ea0f31fd4c9d7608e3c">progress_</a></td></tr>
<tr class="separator:a8e17f7a3517f0ea0f31fd4c9d7608e3c"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader">Temporary variables for parsing</div></td></tr>
<tr class="memitem:a98696316ca504aafbaa7eb2f2c062df6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a98696316ca504aafbaa7eb2f2c062df6">consensus_map_</a></td></tr>
<tr class="separator:a98696316ca504aafbaa7eb2f2c062df6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a65b28df44922cbdc28bcc48bf71afc66"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a65b28df44922cbdc28bcc48bf71afc66">act_cons_element_</a></td></tr>
<tr class="separator:a65b28df44922cbdc28bcc48bf71afc66"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a590ed25661a837bfedb38402e2c50b47"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< 2 > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a590ed25661a837bfedb38402e2c50b47">pos_</a></td></tr>
<tr class="separator:a590ed25661a837bfedb38402e2c50b47"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a05fe9910cacd8b17b3c6ac120135a6fc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a05fe9910cacd8b17b3c6ac120135a6fc">it_</a></td></tr>
<tr class="separator:a05fe9910cacd8b17b3c6ac120135a6fc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a></td></tr>
<tr class="memitem:a51b11736a292f64a76f20729bb699879 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a51b11736a292f64a76f20729bb699879">error_message_</a></td></tr>
<tr class="memdesc:a51b11736a292f64a76f20729bb699879 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Error message of the last error. <a href="#a51b11736a292f64a76f20729bb699879">More...</a><br/></td></tr>
<tr class="separator:a51b11736a292f64a76f20729bb699879 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a45e9455fa6290f5c2d1f179902bae53a inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a45e9455fa6290f5c2d1f179902bae53a">file_</a></td></tr>
<tr class="memdesc:a45e9455fa6290f5c2d1f179902bae53a inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> name. <a href="#a45e9455fa6290f5c2d1f179902bae53a">More...</a><br/></td></tr>
<tr class="separator:a45e9455fa6290f5c2d1f179902bae53a inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4e87a8f69bbc06cd56776556dc1680ed inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a4e87a8f69bbc06cd56776556dc1680ed">version_</a></td></tr>
<tr class="memdesc:a4e87a8f69bbc06cd56776556dc1680ed inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Schema version. <a href="#a4e87a8f69bbc06cd56776556dc1680ed">More...</a><br/></td></tr>
<tr class="separator:a4e87a8f69bbc06cd56776556dc1680ed inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9baa4a46e0c6855a03e6263782e3fe8c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html">StringManager</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a9baa4a46e0c6855a03e6263782e3fe8c">sm_</a></td></tr>
<tr class="memdesc:a9baa4a46e0c6855a03e6263782e3fe8c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Helper class for string conversion. <a href="#a9baa4a46e0c6855a03e6263782e3fe8c">More...</a><br/></td></tr>
<tr class="separator:a9baa4a46e0c6855a03e6263782e3fe8c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11019255364568a4576df012500da50c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a11019255364568a4576df012500da50c">open_tags_</a></td></tr>
<tr class="memdesc:a11019255364568a4576df012500da50c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Stack of open XML tags. <a href="#a11019255364568a4576df012500da50c">More...</a><br/></td></tr>
<tr class="separator:a11019255364568a4576df012500da50c inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6476bfc5285236c19e7f731e43d05cdd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">std::vector< std::vector<br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1String.html">String</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6476bfc5285236c19e7f731e43d05cdd">cv_terms_</a></td></tr>
<tr class="memdesc:a6476bfc5285236c19e7f731e43d05cdd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="mdescLeft"> </td><td class="mdescRight">Array of CV term lists (one sublist denotes one term and it's children) <a href="#a6476bfc5285236c19e7f731e43d05cdd">More...</a><br/></td></tr>
<tr class="separator:a6476bfc5285236c19e7f731e43d05cdd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#aea8dd5b28e6057c3e2b3f296966431c3">schema_location_</a></td></tr>
<tr class="memdesc:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">XML schema file location. <a href="#aea8dd5b28e6057c3e2b3f296966431c3">More...</a><br/></td></tr>
<tr class="separator:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a5a33231ac1616a429e6533af15231951">schema_version_</a></td></tr>
<tr class="memdesc:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Version string. <a href="#a5a33231ac1616a429e6533af15231951">More...</a><br/></td></tr>
<tr class="separator:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a6b0159bfc4bc3062d47825cccfeec9cd">enforced_encoding_</a></td></tr>
<tr class="memdesc:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Encoding string that replaces the encoding (system dependend or specified in the XML). Disabled if empty. Used as a workaround for XTandem output xml. <a href="#a6b0159bfc4bc3062d47825cccfeec9cd">More...</a><br/></td></tr>
<tr class="separator:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a7c691d7de2a43bc5606e96cb15da3641">type_</a></td></tr>
<tr class="separator:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a56589612e0e4164bf80c3918a087d05a">begin_</a></td></tr>
<tr class="separator:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a0c749bf4e621699b7a5c45ae22c2fa90">end_</a></td></tr>
<tr class="separator:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#aec57b26e143202dc119a41592e075932">value_</a></td></tr>
<tr class="separator:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">QProgressDialog * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a76072b3919abcf01141ba68da8a001fd">dlg_</a></td></tr>
<tr class="separator:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6d9750520313ea7f843d7a49cb2e9e5f inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StopWatch.html">StopWatch</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a6d9750520313ea7f843d7a49cb2e9e5f">stop_watch_</a></td></tr>
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<tr class="memitem:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">time_t </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a79bacf60c4109d7517590441c7f85f9c">last_invoke_</a></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1Internal_1_1XMLHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1Internal_1_1XMLHandler')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a></td></tr>
<tr class="memitem:a6cc566e3bbfdcb8a5a9d85941238cef5 inherit pub_types_classOpenMS_1_1Internal_1_1XMLHandler"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">ActionMode</a> { <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5a972dbcdf74cff71e20bdcfb53be9c391">LOAD</a>,
<a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5afeb01cb4572ba190cd7932e49446c480">STORE</a>
}</td></tr>
<tr class="memdesc:a6cc566e3bbfdcb8a5a9d85941238cef5"><td class="mdescLeft"> </td><td class="mdescRight">Action to set the current mode (for error messages) <a href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">More...</a><br/></td></tr>
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<tr class="memitem:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> { <a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca3ab34dd50405af2d5a62627d572f7860">CMD</a>,
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca73c6901c7c648a6a735770bc038bb26a">GUI</a>,
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87cac157bdf0b85a40d2619cbc8bc1ae5fe2">NONE</a>
}</td></tr>
<tr class="memdesc:af67907baa897e9fb84df0cb89795b87c"><td class="mdescLeft"> </td><td class="mdescRight">Possible log types. <a href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">More...</a><br/></td></tr>
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<tr class="memitem:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a94eb3ef5ef94b83eb348dd00a2b53119">recursion_depth_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>This class provides Input functionality for ConsensusMaps and Output functionality for alignments and quantitation. </p>
<p>This class can be used to load the content of a consensusXML file into a <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> or to save the content of an <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> object into an XML file.</p>
<p>A documented schema for this format can be found at <a href="http://open-ms.sourceforge.net/schemas/">http://open-ms.sourceforge.net/schemas/</a>.</p>
<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000007">Todo:</a></b></dt><dd>Take care that unique ids are assigned properly by TOPP tools before calling <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#af72f4966d65af7a802025d8640a0e570" title="Stores a consensus map to file. ">ConsensusXMLFile::store()</a>. There will be a message on LOG_INFO but we will make no attempt to fix the problem in this class. (all developers)</dd></dl>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<p>Default constructor. </p>
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<td class="memname">~<a class="el" href="classOpenMS_1_1ConsensusXMLFile.html">ConsensusXMLFile</a> </td>
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<p>Destructor. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">virtual void characters </td>
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<p>Parsing method for character data. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">XMLHandler</a>.</p>
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<p>Parsing method for closing tags. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad44143319b25de70f8b652fded0d0e75">XMLHandler</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>& getOptions </td>
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<p>Mutable access to the options for loading/storing. </p>
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<td class="memname">const <a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>& getOptions </td>
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<p>Non-mutable access to the options for loading/storing. </p>
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<td class="memname">void load </td>
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<p>Loads a consensus map from file and calls updateRanges. </p>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be opened </td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1ParseError.html" title="Parse Error exception. ">Exception::ParseError</a></td><td>is thrown if an error occurs during parsing </td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1MissingInformation.html" title="Not all required information provided. ">Exception::MissingInformation</a></td><td>is thrown if source files are missing/duplicated or map-IDs are referencing non-existing maps </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a1c92b33d10330879ab9d4bc2bb888d07">TOPPViewBase::addDataFile()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a26fb52355d1e3f483d9e9cf9d1cf6e25">TOPPViewBase::fileChanged_()</a>, and <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#ae930eb8197c8961725cdc3aacc6a1c09">SILACAnalyzer::readConsensus()</a>.</p>
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<p>Parsing method for opening tags. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a769cd98c6f960e3df9fcb878e14318e8">XMLHandler</a>.</p>
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<p>Stores a consensus map to file. </p>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToCreateFile.html" title="Unable to create file exception. ">Exception::UnableToCreateFile</a></td><td>is thrown if the file name is not writable </td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1IllegalArgument.html" title="A method or algorithm argument contains illegal values. ">Exception::IllegalArgument</a></td><td>is thrown if the consensus map is not valid </td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1MissingInformation.html" title="Not all required information provided. ">Exception::MissingInformation</a></td><td>is thrown if source files are missing/duplicated or map-IDs are referencing non-existing maps </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a923163eea1a103f7faaaa25b374e536a">TOPPViewBase::runTOPPTool_()</a>, and <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#ae14ec0b9fd095ebe54c1e8cc75338548">SILACAnalyzer::writeConsensus()</a>.</p>
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<td class="memname">void writePeptideIdentification_ </td>
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<p>Writes a peptide identification to a stream (for assigned/unassigned peptide identifications) </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>> accession_to_id_</td>
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<p><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from search identifier concatenated with protein accession to id. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> act_cons_element_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a>* consensus_map_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a>> id_identifier_</td>
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<p><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from file xs:id to identification run identifier (for linking peptide identifications to the corresponding run) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a>> identifier_id_</td>
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<p><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from identification run identifier to file xs:id (for linking peptide identifications to the corresponding run) </p>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> it_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a>* last_meta_</td>
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<p>Pointer to last read object as a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a>, or null. </p>
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<p>Options that can be set. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> pep_hit_</td>
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<p>Temporary peptide hit. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> pep_id_</td>
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<p>Temporary peptide <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>. </p>
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<td class="memname"><a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> progress_</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> prot_hit_</td>
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<p>Temporary protein hit. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ProteinIdentification.html">ProteinIdentification</a> prot_id_</td>
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<p>Temporary protein <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a>> proteinid_to_accession_</td>
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<p><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> from protein id to accession. </p>
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<td class="memname"><a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html">ProteinIdentification::SearchParameters</a> search_param_</td>
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<p>Temporary search parameters file. </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
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