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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">DBAdapter Class Reference<div class="ingroups"><a class="el" href="group__DatabaseIO.html">Database IO</a></div></div> </div>
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<p>A class for accessing and storing data in a SQL database.
<a href="classOpenMS_1_1DBAdapter.html#details">More...</a></p>
<p><code>#include <<a class="el" href="DBAdapter_8h_source.html">OpenMS/FORMAT/DB/DBAdapter.h</a>></code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a6bb171c3a74539db235e353ec6bff0b4"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a6bb171c3a74539db235e353ec6bff0b4">DBAdapter</a> (<a class="el" href="classOpenMS_1_1DBConnection.html">DBConnection</a> &db_con)</td></tr>
<tr class="memdesc:a6bb171c3a74539db235e353ec6bff0b4"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a6bb171c3a74539db235e353ec6bff0b4">More...</a><br/></td></tr>
<tr class="separator:a6bb171c3a74539db235e353ec6bff0b4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8ef593bc881b554fcb36ad6e84ff8f67"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a8ef593bc881b554fcb36ad6e84ff8f67">~DBAdapter</a> ()</td></tr>
<tr class="memdesc:a8ef593bc881b554fcb36ad6e84ff8f67"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a8ef593bc881b554fcb36ad6e84ff8f67">More...</a><br/></td></tr>
<tr class="separator:a8ef593bc881b554fcb36ad6e84ff8f67"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac594c8ab5a3032ac493b375c7175f533"><td class="memTemplParams" colspan="2">template<class ExperimentType > </td></tr>
<tr class="memitem:ac594c8ab5a3032ac493b375c7175f533"><td class="memTemplItemLeft" align="right" valign="top">void </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">storeExperiment</a> (ExperimentType &exp)</td></tr>
<tr class="memdesc:ac594c8ab5a3032ac493b375c7175f533"><td class="mdescLeft"> </td><td class="mdescRight">Stores a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>. <a href="#ac594c8ab5a3032ac493b375c7175f533">More...</a><br/></td></tr>
<tr class="separator:ac594c8ab5a3032ac493b375c7175f533"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad1664f90cd894f0713284a213733afb8"><td class="memTemplParams" colspan="2">template<class ExperimentType > </td></tr>
<tr class="memitem:ad1664f90cd894f0713284a213733afb8"><td class="memTemplItemLeft" align="right" valign="top">void </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">loadExperiment</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, ExperimentType &exp)</td></tr>
<tr class="memdesc:ad1664f90cd894f0713284a213733afb8"><td class="mdescLeft"> </td><td class="mdescRight">Reads a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>. <a href="#ad1664f90cd894f0713284a213733afb8">More...</a><br/></td></tr>
<tr class="separator:ad1664f90cd894f0713284a213733afb8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad4d077939d4a1b5a633d79c138e364df"><td class="memTemplParams" colspan="2">template<class SpectrumType > </td></tr>
<tr class="memitem:ad4d077939d4a1b5a633d79c138e364df"><td class="memTemplItemLeft" align="right" valign="top">void </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">loadSpectrum</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, SpectrumType &spec)</td></tr>
<tr class="memdesc:ad4d077939d4a1b5a633d79c138e364df"><td class="mdescLeft"> </td><td class="mdescRight">Reads a <a class="el" href="classOpenMS_1_1MSSpectrum.html" title="The representation of a 1D spectrum. ">MSSpectrum</a>. <a href="#ad4d077939d4a1b5a633d79c138e364df">More...</a><br/></td></tr>
<tr class="separator:ad4d077939d4a1b5a633d79c138e364df"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a819235ed2844f03df53f4983a7008f28"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a819235ed2844f03df53f4983a7008f28">getOptions</a> ()</td></tr>
<tr class="memdesc:a819235ed2844f03df53f4983a7008f28"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the options for loading/storing. <a href="#a819235ed2844f03df53f4983a7008f28">More...</a><br/></td></tr>
<tr class="separator:a819235ed2844f03df53f4983a7008f28"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a5fa0d33e72b9dc6624eeb42c2ca6955a">getOptions</a> () const </td></tr>
<tr class="memdesc:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the options for loading/storing. <a href="#a5fa0d33e72b9dc6624eeb42c2ca6955a">More...</a><br/></td></tr>
<tr class="separator:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af675d68d979fb34924c4b6a8b3738b92"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">checkDBVersion</a> (bool warning)</td></tr>
<tr class="memdesc:af675d68d979fb34924c4b6a8b3738b92"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if the DB is up-to-date (Checks the version in ADMIN_Version table). <a href="#af675d68d979fb34924c4b6a8b3738b92">More...</a><br/></td></tr>
<tr class="separator:af675d68d979fb34924c4b6a8b3738b92"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a12c7992d3823baf95c613c848a6841b4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a12c7992d3823baf95c613c848a6841b4">createDB</a> ()</td></tr>
<tr class="memdesc:a12c7992d3823baf95c613c848a6841b4"><td class="mdescLeft"> </td><td class="mdescRight">Deletes all tables in the database and creates a new <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> database. <a href="#a12c7992d3823baf95c613c848a6841b4">More...</a><br/></td></tr>
<tr class="separator:a12c7992d3823baf95c613c848a6841b4"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a25918fd497c313424f21a1e068c3d1ec"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a25918fd497c313424f21a1e068c3d1ec">DBAdapter</a> ()</td></tr>
<tr class="memdesc:a25918fd497c313424f21a1e068c3d1ec"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a25918fd497c313424f21a1e068c3d1ec">More...</a><br/></td></tr>
<tr class="separator:a25918fd497c313424f21a1e068c3d1ec"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac923559a725398bcd743ea2276e05d46"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &info)</td></tr>
<tr class="memdesc:ac923559a725398bcd743ea2276e05d46"><td class="mdescLeft"> </td><td class="mdescRight">Stores, updates or deletes <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data. <a href="#ac923559a725398bcd743ea2276e05d46">More...</a><br/></td></tr>
<tr class="separator:ac923559a725398bcd743ea2276e05d46"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a231c675c22a74b94d7690e685eaabb2f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a231c675c22a74b94d7690e685eaabb2f">storeMetaInfo_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, const <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> &peak)</td></tr>
<tr class="memdesc:a231c675c22a74b94d7690e685eaabb2f"><td class="mdescLeft"> </td><td class="mdescRight">Overload for <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a> that does nothing. <a href="#a231c675c22a74b94d7690e685eaabb2f">More...</a><br/></td></tr>
<tr class="separator:a231c675c22a74b94d7690e685eaabb2f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77586d118b43846761542b303d6061b0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a77586d118b43846761542b303d6061b0">storeMetaInfo_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, const <a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> &peak)</td></tr>
<tr class="memdesc:a77586d118b43846761542b303d6061b0"><td class="mdescLeft"> </td><td class="mdescRight">Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. <a href="#a77586d118b43846761542b303d6061b0">More...</a><br/></td></tr>
<tr class="separator:a77586d118b43846761542b303d6061b0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1fc3457c1eec7f2377fa8598136a58ef"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a1fc3457c1eec7f2377fa8598136a58ef">storeMetaInfo_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, const <a class="el" href="classOpenMS_1_1Precursor.html">Precursor</a> &peak)</td></tr>
<tr class="memdesc:a1fc3457c1eec7f2377fa8598136a58ef"><td class="mdescLeft"> </td><td class="mdescRight">Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> (via <a class="el" href="classOpenMS_1_1CVTermList.html" title="Representation of controlled vocabulary term list. ">CVTermList</a>) and a and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. <a href="#a1fc3457c1eec7f2377fa8598136a58ef">More...</a><br/></td></tr>
<tr class="separator:a1fc3457c1eec7f2377fa8598136a58ef"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af52a951de336423a295e55e03fac07f5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &info)</td></tr>
<tr class="memdesc:af52a951de336423a295e55e03fac07f5"><td class="mdescLeft"> </td><td class="mdescRight">Loads <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data from database. <a href="#af52a951de336423a295e55e03fac07f5">More...</a><br/></td></tr>
<tr class="separator:af52a951de336423a295e55e03fac07f5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7b863db5687470b2b768d1bd84e48c2e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a7b863db5687470b2b768d1bd84e48c2e">loadMetaInfo_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> &peak)</td></tr>
<tr class="memdesc:a7b863db5687470b2b768d1bd84e48c2e"><td class="mdescLeft"> </td><td class="mdescRight">Overloaded method for <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>, which does nothing. <a href="#a7b863db5687470b2b768d1bd84e48c2e">More...</a><br/></td></tr>
<tr class="separator:a7b863db5687470b2b768d1bd84e48c2e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad92787f097bf9a967304fb40274b68d6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ad92787f097bf9a967304fb40274b68d6">loadMetaInfo_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> &peak)</td></tr>
<tr class="memdesc:ad92787f097bf9a967304fb40274b68d6"><td class="mdescLeft"> </td><td class="mdescRight">Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. <a href="#ad92787f097bf9a967304fb40274b68d6">More...</a><br/></td></tr>
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<tr class="memitem:a529cb7341d512fd09835de6c2d87bf1b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a529cb7341d512fd09835de6c2d87bf1b">loadMetaInfo_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1Precursor.html">Precursor</a> &peak)</td></tr>
<tr class="memdesc:a529cb7341d512fd09835de6c2d87bf1b"><td class="mdescLeft"> </td><td class="mdescRight">Overloaded method for <a class="el" href="classOpenMS_1_1Precursor.html" title="Precursor meta information. ">Precursor</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> (via <a class="el" href="classOpenMS_1_1CVTermList.html" title="Representation of controlled vocabulary term list. ">CVTermList</a>) and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. <a href="#a529cb7341d512fd09835de6c2d87bf1b">More...</a><br/></td></tr>
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<tr class="memitem:a67582ba75d08b191330077249f16f8a1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, const <a class="el" href="classOpenMS_1_1String.html">String</a> &condition)</td></tr>
<tr class="memdesc:a67582ba75d08b191330077249f16f8a1"><td class="mdescLeft"> </td><td class="mdescRight">Conditionally deletes <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data from database. <a href="#a67582ba75d08b191330077249f16f8a1">More...</a><br/></td></tr>
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<tr class="memitem:aca95bbdb59bcd3152d70f399e928b4a2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#aca95bbdb59bcd3152d70f399e928b4a2">storeFile_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &parent_table, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, const <a class="el" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &file)</td></tr>
<tr class="memdesc:aca95bbdb59bcd3152d70f399e928b4a2"><td class="mdescLeft"> </td><td class="mdescRight">Stores, updates or deletes file information. <a href="#aca95bbdb59bcd3152d70f399e928b4a2">More...</a><br/></td></tr>
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<tr class="memitem:af790bad53b9ea670e78d4d8f72fbd04c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#af790bad53b9ea670e78d4d8f72fbd04c">loadFile_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &file)</td></tr>
<tr class="memdesc:af790bad53b9ea670e78d4d8f72fbd04c"><td class="mdescLeft"> </td><td class="mdescRight">Loads file information. <a href="#af790bad53b9ea670e78d4d8f72fbd04c">More...</a><br/></td></tr>
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<tr class="memitem:ae38edd7365e0241ed6b46b81ea5fe6ee"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ae38edd7365e0241ed6b46b81ea5fe6ee">storeSample_</a> (const <a class="el" href="classOpenMS_1_1Sample.html">Sample</a> &sample, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> exp_id, <a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id)</td></tr>
<tr class="memdesc:ae38edd7365e0241ed6b46b81ea5fe6ee"><td class="mdescLeft"> </td><td class="mdescRight">Stores, updates or deletes sample information. <a href="#ae38edd7365e0241ed6b46b81ea5fe6ee">More...</a><br/></td></tr>
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<tr class="memitem:ad5864c079da5a9743ed735d7457263f9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#ad5864c079da5a9743ed735d7457263f9">loadSample_</a> (<a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> id, <a class="el" href="classOpenMS_1_1Sample.html">Sample</a> &sample)</td></tr>
<tr class="memdesc:ad5864c079da5a9743ed735d7457263f9"><td class="mdescLeft"> </td><td class="mdescRight">Loads sample information. <a href="#ad5864c079da5a9743ed735d7457263f9">More...</a><br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:aa2b2d9eddcd952d83d19da4e189fba69"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DBConnection.html">DBConnection</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a></td></tr>
<tr class="memdesc:aa2b2d9eddcd952d83d19da4e189fba69"><td class="mdescLeft"> </td><td class="mdescRight">Reference to the DB connection handed over in the constructor. <a href="#aa2b2d9eddcd952d83d19da4e189fba69">More...</a><br/></td></tr>
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<tr class="memitem:a654a0b5941d937e303c64bc9e732baec"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A class for accessing and storing data in a SQL database. </p>
<p>It can be used to create objects from the DB or store them in the DB.</p>
<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000008">Todo:</a></b></dt><dd><p class="startdd">Add <a class="el" href="classOpenMS_1_1DataProcessing.html" title="Descripton of the applied preprocessing steps. ">DataProcessing</a> to <a class="el" href="classOpenMS_1_1MetaInfoDescription.html" title="Description of the meta data arrays of MSSpectrum. ">MetaInfoDescription</a> (Hiwi, Mathias) </p>
<p>Check if test is really complete (Hiwi, Mathias) </p>
<p>Check that all values are quoted (Hiwi, Mathias) </p>
<p class="enddd">Implement StringDataArray and IntegerDataArray of spectrum (Hiwi, Mathias)</p>
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1DBConnection.html">DBConnection</a> & </td>
<td class="paramname"><em>db_con</em></td><td>)</td>
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<p>Constructor. </p>
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<td class="memname">~<a class="el" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a> </td>
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<p>Destructor. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a> </td>
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<p>Not implemented. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">bool checkDBVersion </td>
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<td class="paramtype">bool </td>
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<p>Returns true if the DB is up-to-date (Checks the version in ADMIN_Version table). </p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">warning</td><td>if this is set, a warning is issued to stderr if the db is not up-to-date. </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>, and <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<td class="memname">void createDB </td>
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<p>Deletes all tables in the database and creates a new <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> database. </p>
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<td class="memname">void deleteMetaInfo_ </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
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<p>Conditionally deletes <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data from database. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>& getOptions </td>
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<p>Mutable access to the options for loading/storing. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab1f7cf958ce834536a786f085c439b04">TOPPViewBase::metadataDatabaseDialog()</a>.</p>
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<td class="memname">const <a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>& getOptions </td>
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<p>Non-mutable access to the options for loading/storing. </p>
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<td class="memname">void loadExperiment </td>
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<td class="paramtype">ExperimentType & </td>
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<p>Reads a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>. </p>
<p>References <a class="el" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">DBAdapter::checkDBVersion()</a>, <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#ae525bb5a71aa3ae9d811588db4652c00">ProteinIdentification::SearchParameters::db</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">DBAdapter::db_con_</a>, <a class="el" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">DBConnection::executeQuery()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ab67bae9dafa817481d9efe286bf853c0">PeakFileOptions::getMetadataOnly()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a9843017b53501a87d8a747895c4cf073">PeakFileOptions::getMSLevels()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a5cb3d70f7095ec7538835c895fac78d7">PeakFileOptions::getRTRange()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#af7e8f29d109ed9627598d2f8a6bb28a9">ProteinIdentification::getSearchParameters()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a263b56e8754e50f0aa55595b7c76d387">PeakFileOptions::hasMSLevels()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a2c04b86565fbb199cbb2209a4588f4de">PeakFileOptions::hasRTRange()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">DBAdapter::loadMetaInfo_()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#ad5864c079da5a9743ed735d7457263f9">DBAdapter::loadSample_()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">DIntervalBase< D >::maxPosition()</a>, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">DIntervalBase< D >::minPosition()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">DBAdapter::options_</a>, <a class="el" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">DateTime::set()</a>, <a class="el" href="classOpenMS_1_1ProteinHit.html#aba1fff7a176ff80d53f932769e606980">ProteinHit::setAccession()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a48bdc5161d32fad1317ecc6d1a3fc974">MassAnalyzer::setAccuracy()</a>, <a class="el" href="classOpenMS_1_1IonDetector.html#a89af53dd08978920d0acde6115b8b485">IonDetector::setAcquisitionMode()</a>, <a class="el" href="classOpenMS_1_1IonDetector.html#ab9933015a94bdd9827b4a417232b82f2">IonDetector::setADCSamplingFrequency()</a>, <a class="el" href="classOpenMS_1_1ContactPerson.html#ad7d93df87f74de90e5d0870ebddfd6b5">ContactPerson::setContactInfo()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#ae0728c54c04bcc99a4c6ebfa961ed2c5">ProteinIdentification::setDateTime()</a>, <a class="el" href="classOpenMS_1_1ContactPerson.html#a74399439996aca9fc1c551081a556294">ContactPerson::setEmail()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a55f2fe6f72e20af53d3620f79386edac">MassAnalyzer::setFinalMSExponent()</a>, <a class="el" href="classOpenMS_1_1ContactPerson.html#a391c58adf84a5096f9fa9161fb985902">ContactPerson::setFirstName()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a2b12b0259c1b9a843a11013ea4097899">ProteinIdentification::setHigherScoreBetter()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a86f5c6d7c17c3aa94ec734e2a4fb50fa">ProteinIdentification::setHits()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a373113a64e05061b5d1ad3070180ebee">IonSource::setInletType()</a>, <a class="el" href="classOpenMS_1_1ContactPerson.html#ab884bb42e1849ac6bad45ae0cf1bb3a5">ContactPerson::setInstitution()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a3188359ccfe5a3afff5d3bcbb0e26abb">IonSource::setIonizationMethod()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a2e362a69ba721e7ea80a89c46a997af6">MassAnalyzer::setIsolationWidth()</a>, <a class="el" href="classOpenMS_1_1ContactPerson.html#ae5056c1e33cb9bbea429b446ef0d41a6">ContactPerson::setLastName()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a113d974e38726fb862cd6765a3e04e14">MassAnalyzer::setMagneticFieldStrength()</a>, <a class="el" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">Software::setName()</a>, <a class="el" href="classOpenMS_1_1IonDetector.html#a5b7d6f465d2b2dade6c296d9aa439b9c">IonDetector::setOrder()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a5b7d6f465d2b2dade6c296d9aa439b9c">IonSource::setOrder()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a5b7d6f465d2b2dade6c296d9aa439b9c">MassAnalyzer::setOrder()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a1d9f4ba1e172a487acb87c951b40b31e">IonSource::setPolarity()</a>, <a class="el" href="classOpenMS_1_1ProteinHit.html#a7daed733ac80f8002f3a1fbdc97c21e1">ProteinHit::setRank()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a000fcbba4b64f34da2819581fc35443f">MassAnalyzer::setReflectronState()</a>, <a class="el" href="classOpenMS_1_1IonDetector.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">IonDetector::setResolution()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">MassAnalyzer::setResolution()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a248c39266a3935b06b981254aa02487a">MassAnalyzer::setResolutionMethod()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a6394f9d7a9b0355daca159b81617341c">MassAnalyzer::setResolutionType()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#af4b42c1902b00befb435be5e0e2239ee">MassAnalyzer::setScanDirection()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#ac47980cff52080e1fd46f1983ff8d960">MassAnalyzer::setScanLaw()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#ab478332cfcbe095f4ccce9381d7af978">MassAnalyzer::setScanRate()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a475edd3f1f00cb539e5812ecb0a6ca23">MassAnalyzer::setScanTime()</a>, <a class="el" href="classOpenMS_1_1ProteinHit.html#ae81d824b06eb6152f84276cdec74ce8b">ProteinHit::setScore()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">ProteinIdentification::setScoreType()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a15a14866884b8b4dea8950b2151a0963">ProteinIdentification::setSearchEngine()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a82e595befae76c1f7c22918420d2d9e8">ProteinIdentification::setSearchEngineVersion()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#afb0f58ddeea0e6f58da132fae1421563">ProteinIdentification::setSearchParameters()</a>, <a class="el" href="classOpenMS_1_1ProteinHit.html#a2b8bf5f3febdb76461bdea9ff39d6b6d">ProteinHit::setSequence()</a>, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">ProteinIdentification::setSignificanceThreshold()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a695379d31d23162e1a471951b21e6ba6">MassAnalyzer::setTOFTotalPathLength()</a>, <a class="el" href="classOpenMS_1_1IonDetector.html#a608e58a2f9fb7e497f91662a6e9ae4cc">IonDetector::setType()</a>, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#aef26ae8a53a25dd2da573e980e8a5568">MassAnalyzer::setType()</a>, <a class="el" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">Software::setVersion()</a>, <a class="el" href="classOpenMS_1_1String.html#a28f849a39a6e1a02a891d9e7e7f6eb79">String::toInt()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0b768098d8235f4904a38ec53ef7d984">TOPPViewBase::addDataDB()</a>, and <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab1f7cf958ce834536a786f085c439b04">TOPPViewBase::metadataDatabaseDialog()</a>.</p>
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<td class="memname">void loadFile_ </td>
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<td class="paramname"><em>id</em>, </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1SourceFile.html">SourceFile</a> & </td>
<td class="paramname"><em>file</em> </td>
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<p>Loads file information. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>.</p>
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<td class="memname">void loadMetaInfo_ </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
<td class="paramname"><em>id</em>, </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> & </td>
<td class="paramname"><em>info</em> </td>
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<p>Loads <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data from database. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>, and <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>.</p>
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<td class="paramname"><em>id</em>, </td>
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<td></td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> & </td>
<td class="paramname"><em>peak</em> </td>
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<p>Overloaded method for <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>, which does nothing. </p>
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<td class="memname">void loadMetaInfo_ </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
<td class="paramname"><em>id</em>, </td>
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<td></td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> & </td>
<td class="paramname"><em>peak</em> </td>
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<p>Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. </p>
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<td class="paramname"><em>id</em>, </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1Precursor.html">Precursor</a> & </td>
<td class="paramname"><em>peak</em> </td>
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<p>Overloaded method for <a class="el" href="classOpenMS_1_1Precursor.html" title="Precursor meta information. ">Precursor</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> (via <a class="el" href="classOpenMS_1_1CVTermList.html" title="Representation of controlled vocabulary term list. ">CVTermList</a>) and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. </p>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1Sample.html">Sample</a> & </td>
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<p>Loads sample information. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>.</p>
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<td class="paramname"><em>id</em>, </td>
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<td class="paramtype">SpectrumType & </td>
<td class="paramname"><em>spec</em> </td>
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<p>Reads a <a class="el" href="classOpenMS_1_1MSSpectrum.html" title="The representation of a 1D spectrum. ">MSSpectrum</a>. </p>
<p>References <a class="el" href="structOpenMS_1_1ScanWindow.html#aea3ca80628c489842c52a61e195dd047">ScanWindow::begin</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">DBAdapter::checkDBVersion()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">DBAdapter::db_con_</a>, <a class="el" href="structOpenMS_1_1ScanWindow.html#aed18ab075b5c0317ae32335a57f899e8">ScanWindow::end</a>, <a class="el" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">DBConnection::executeQuery()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a32707decd2e12b46b52b39d96ae62ebd">PeakFileOptions::getIntensityRange()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a53ddde64ac4058bb889286eb546e0959">PeakFileOptions::getMZRange()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#ad34bb2f8f677e2f6c6c505d11754a765">DataProcessing::getProcessingActions()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ae37c6d9af559f4ff2ce43033481b86d6">PeakFileOptions::hasIntensityRange()</a>, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a3e0f237b36957f9a2000792d96f058ab">PeakFileOptions::hasMZRange()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#af790bad53b9ea670e78d4d8f72fbd04c">DBAdapter::loadFile_()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">DBAdapter::loadMetaInfo_()</a>, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">DIntervalBase< D >::maxPosition()</a>, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">DIntervalBase< D >::minPosition()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">DBAdapter::options_</a>, <a class="el" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">DateTime::set()</a>, <a class="el" href="classOpenMS_1_1PeptideHit.html#a2f865e760a429c2648e2de2db7793fcb">PeptideHit::setAAAfter()</a>, <a class="el" href="classOpenMS_1_1PeptideHit.html#aa50c3e3233976cef5c82cd6eed3f1768">PeptideHit::setAABefore()</a>, <a class="el" href="classOpenMS_1_1PeptideHit.html#aca40a4630f5f8a0568899b74a62dcd4b">PeptideHit::setCharge()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">DataProcessing::setCompletionTime()</a>, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a98447dc4641b69db36fcc5087cfe73e6">PeptideIdentification::setHigherScoreBetter()</a>, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#ab4d15b02dbc53727d0b6dae927ad6688">PeptideIdentification::setHits()</a>, <a class="el" href="classOpenMS_1_1Acquisition.html#a3ea2e9a83b6b409b673cac018f5099ab">Acquisition::setIdentifier()</a>, <a class="el" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">Software::setName()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">InstrumentSettings::setPolarity()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">Peak2D::setPosition()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">InstrumentSettings::setScanMode()</a>, <a class="el" href="classOpenMS_1_1PeptideHit.html#a2e9b7c12f6d8fa7415aa0aca69208f42">PeptideHit::setScore()</a>, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">PeptideIdentification::setScoreType()</a>, <a class="el" href="classOpenMS_1_1PeptideHit.html#a209d1e10f38a766c3f73c9666e89e14d">PeptideHit::setSequence()</a>, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">PeptideIdentification::setSignificanceThreshold()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">DataProcessing::setSoftware()</a>, <a class="el" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">Software::setVersion()</a>, and <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">InstrumentSettings::setZoomScan()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>.</p>
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<td class="memname">void storeExperiment </td>
<td>(</td>
<td class="paramtype">ExperimentType & </td>
<td class="paramname"><em>exp</em></td><td>)</td>
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<p>Stores a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>. </p>
<p>References <a class="el" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">DBAdapter::checkDBVersion()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">DBAdapter::db_con_</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">DBAdapter::deleteMetaInfo_()</a>, <a class="el" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">DBConnection::executeQuery()</a>, <a class="el" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">DBConnection::getAutoId()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#a7f85e7384767cfef76bc5d30bb9888ee">HPLC::getColumn()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#aab4a6ffc575f5134842b0275bce5de7a">HPLC::getComment()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a935d3c82c309ed3c0ed94d5edb12ce08">Instrument::getCustomizations()</a>, <a class="el" href="classOpenMS_1_1Gradient.html#a972de0061b9ae1f49d707ed7e2f4759a">Gradient::getEluents()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#a6fe2c9238504babb49dce178380c69e9">HPLC::getFlux()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#a7203e7128a52306e685cb04f0ddc756c">HPLC::getInstrument()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a1a127ee8460671ffdc8de43f82f7de47">Instrument::getIonOptics()</a>, <a class="el" href="classOpenMS_1_1AcquisitionInfo.html#a883a8e420b509ac1c9a4b08f4494915d">AcquisitionInfo::getMethodOfCombination()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a307ba40c92040f24cb0b496fb5b58b88">Instrument::getModel()</a>, <a class="el" href="classOpenMS_1_1Software.html#aaee0f2845288173de9f6ad47e6ad31d5">Software::getName()</a>, <a class="el" href="classOpenMS_1_1Gradient.html#ae5e41d61e77f329411cf14d39e2a95b7">Gradient::getPercentages()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a8f7be6e80ef1c4599af3aa096c7f7089">InstrumentSettings::getPolarity()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#ac79b4a7512caa7c7700d61e0e9accaae">HPLC::getPressure()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a541856069e66db2a4cab95d7f1993dc9">InstrumentSettings::getScanMode()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">InstrumentSettings::getScanWindows()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a219795d06917877c7d946a00f23e2319">Instrument::getSoftware()</a>, <a class="el" href="classOpenMS_1_1HPLC.html#aa2cdf2fabbf0210a4477b9c8fa746068">HPLC::getTemperature()</a>, <a class="el" href="classOpenMS_1_1Gradient.html#a03ce84fddeaaab05620cf0b0a61adc13">Gradient::getTimepoints()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#adeb3a96bea31dcca5dc2cba4d6e22cb5">Instrument::getVendor()</a>, <a class="el" href="classOpenMS_1_1Software.html#ae6b3b4b6857bc1987282e2f29611dd41">Software::getVersion()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a3409c914db15bbb4696822e623a69ef1">InstrumentSettings::getZoomScan()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#aca95bbdb59bcd3152d70f399e928b4a2">DBAdapter::storeFile_()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">DBAdapter::storeMetaInfo_()</a>, and <a class="el" href="classOpenMS_1_1DBAdapter.html#ae38edd7365e0241ed6b46b81ea5fe6ee">DBAdapter::storeSample_()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeFile_ </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>parent_table</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1SourceFile.html">SourceFile</a> & </td>
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<p>Stores, updates or deletes file information. </p>
<dl class="section return"><dt>Returns</dt><dd>the id of the new META_File table row </dd></dl>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeMetaInfo_ </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
<td class="paramname"><em>parent_id</em>, </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> & </td>
<td class="paramname"><em>info</em> </td>
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<p>Stores, updates or deletes <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> data. </p>
<dl class="section return"><dt>Returns</dt><dd>the id of the new META_MetaInfo table row </dd></dl>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<td>(</td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
<td class="paramname"><em>parent_id</em>, </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> & </td>
<td class="paramname"><em>peak</em> </td>
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<p>Overload for <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a> that does nothing. </p>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> & </td>
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<p>Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. </p>
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<td>(</td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1Precursor.html">Precursor</a> & </td>
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<p>Overloaded method for <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a>, which is both a <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> (via <a class="el" href="classOpenMS_1_1CVTermList.html" title="Representation of controlled vocabulary term list. ">CVTermList</a>) and a and a <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a>. </p>
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<td class="memname"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeSample_ </td>
<td>(</td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> </td>
<td class="paramname"><em>exp_id</em>, </td>
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<p>Stores, updates or deletes sample information. </p>
<dl class="section return"><dt>Returns</dt><dd>the id of the new META_Sample table row </dd></dl>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1DBConnection.html">DBConnection</a>& db_con_</td>
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<p>Reference to the DB connection handed over in the constructor. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>, <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>, and <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> options_</td>
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<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment()</a>, and <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>.</p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
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