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<HTML>
<HEAD>
<TITLE>DTA2DFile Class Reference</TITLE>
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<A href="index.html">Home</A> &nbsp;&middot;
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1DTA2DFile.html">DTA2DFile</a></li>  </ul>
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<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pri-attribs">Private Attributes</a> &#124;
<a href="classOpenMS_1_1DTA2DFile-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">DTA2DFile Class Reference<div class="ingroups"><a class="el" href="group__FileIO.html">File IO</a></div></div>  </div>
</div><!--header-->
<div class="contents">

<p>DTA2D <a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter.  
 <a href="classOpenMS_1_1DTA2DFile.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="DTA2DFile_8h_source.html">OpenMS/FORMAT/DTA2DFile.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for DTA2DFile:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1DTA2DFile.png" usemap="#DTA2DFile_map" alt=""/>
  <map id="DTA2DFile_map" name="DTA2DFile_map">
<area href="classOpenMS_1_1ProgressLogger.html" title="Base class for all classes that want to report their progess. " alt="ProgressLogger" shape="rect" coords="0,0,103,24"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a819235ed2844f03df53f4983a7008f28"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a819235ed2844f03df53f4983a7008f28">getOptions</a> ()</td></tr>
<tr class="memdesc:a819235ed2844f03df53f4983a7008f28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable access to the options for loading/storing.  <a href="#a819235ed2844f03df53f4983a7008f28">More...</a><br/></td></tr>
<tr class="separator:a819235ed2844f03df53f4983a7008f28"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a5fa0d33e72b9dc6624eeb42c2ca6955a">getOptions</a> () const </td></tr>
<tr class="memdesc:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the options for loading/storing.  <a href="#a5fa0d33e72b9dc6624eeb42c2ca6955a">More...</a><br/></td></tr>
<tr class="separator:a5fa0d33e72b9dc6624eeb42c2ca6955a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aed378b9a389ec00fa2b559bf7d3b710b"><td class="memTemplParams" colspan="2">template&lt;typename MapType &gt; </td></tr>
<tr class="memitem:aed378b9a389ec00fa2b559bf7d3b710b"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#aed378b9a389ec00fa2b559bf7d3b710b">load</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, MapType &amp;map)</td></tr>
<tr class="memdesc:aed378b9a389ec00fa2b559bf7d3b710b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads a map from a DTA2D file.  <a href="#aed378b9a389ec00fa2b559bf7d3b710b">More...</a><br/></td></tr>
<tr class="separator:aed378b9a389ec00fa2b559bf7d3b710b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:adb795d215478320be7c6130ff7ddf853"><td class="memTemplParams" colspan="2">template&lt;typename MapType &gt; </td></tr>
<tr class="memitem:adb795d215478320be7c6130ff7ddf853"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#adb795d215478320be7c6130ff7ddf853">store</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, const MapType &amp;map) const </td></tr>
<tr class="memdesc:adb795d215478320be7c6130ff7ddf853"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stores a map in a DTA2D file.  <a href="#adb795d215478320be7c6130ff7ddf853">More...</a><br/></td></tr>
<tr class="separator:adb795d215478320be7c6130ff7ddf853"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4dc28e36e6da7b6618b255a4e1d82ded"><td class="memTemplParams" colspan="2">template&lt;typename MapType &gt; </td></tr>
<tr class="memitem:a4dc28e36e6da7b6618b255a4e1d82ded"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a4dc28e36e6da7b6618b255a4e1d82ded">storeTIC</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, const MapType &amp;map) const </td></tr>
<tr class="memdesc:a4dc28e36e6da7b6618b255a4e1d82ded"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stores the TIC of a map in a DTA2D file.  <a href="#a4dc28e36e6da7b6618b255a4e1d82ded">More...</a><br/></td></tr>
<tr class="separator:a4dc28e36e6da7b6618b255a4e1d82ded"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr><td colspan="2"><div class="groupHeader">Constructors and Destructor</div></td></tr>
<tr class="memitem:a1fd0505c3b151de5f553fd7d285cd7b4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a1fd0505c3b151de5f553fd7d285cd7b4">DTA2DFile</a> ()</td></tr>
<tr class="memdesc:a1fd0505c3b151de5f553fd7d285cd7b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#a1fd0505c3b151de5f553fd7d285cd7b4">More...</a><br/></td></tr>
<tr class="separator:a1fd0505c3b151de5f553fd7d285cd7b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6478dc2ce3949edca7266443c5110c13"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a6478dc2ce3949edca7266443c5110c13">~DTA2DFile</a> ()</td></tr>
<tr class="memdesc:a6478dc2ce3949edca7266443c5110c13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a6478dc2ce3949edca7266443c5110c13">More...</a><br/></td></tr>
<tr class="separator:a6478dc2ce3949edca7266443c5110c13"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor.  <a href="#a2a106011aec95b2013d7a545f2063d01">More...</a><br/></td></tr>
<tr class="separator:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a19c882d907f90f7f88c7436d82cd2a13">~ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a19c882d907f90f7f88c7436d82cd2a13">More...</a><br/></td></tr>
<tr class="separator:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">setLogType</a> (<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> type) const </td></tr>
<tr class="memdesc:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the progress log that should be used. The default type is NONE!  <a href="#acc3538c5284777d8702ccaefeb61e74c">More...</a><br/></td></tr>
<tr class="separator:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a67024cdd5c34ec571baecabd8f783310">getLogType</a> () const </td></tr>
<tr class="memdesc:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the type of progress log being used.  <a href="#a67024cdd5c34ec571baecabd8f783310">More...</a><br/></td></tr>
<tr class="separator:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">startProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> begin, <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> end, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;label) const </td></tr>
<tr class="memdesc:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes the progress display.  <a href="#af1c45ecd71b5041b70319249e8e73591">More...</a><br/></td></tr>
<tr class="separator:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">setProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> value) const </td></tr>
<tr class="memdesc:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the current progress.  <a href="#a8852277abd03220cc7b80d6c1bed6fed">More...</a><br/></td></tr>
<tr class="separator:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">endProgress</a> () const </td></tr>
<tr class="memdesc:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ends the progress display.  <a href="#a1cc1012b0cdaea97f58d571af1ff45de">More...</a><br/></td></tr>
<tr class="separator:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a654a0b5941d937e303c64bc9e732baec"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html#a654a0b5941d937e303c64bc9e732baec">options_</a></td></tr>
<tr class="separator:a654a0b5941d937e303c64bc9e732baec"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> { <a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca3ab34dd50405af2d5a62627d572f7860">CMD</a>, 
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca73c6901c7c648a6a735770bc038bb26a">GUI</a>, 
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87cac157bdf0b85a40d2619cbc8bc1ae5fe2">NONE</a>
 }</td></tr>
<tr class="memdesc:af67907baa897e9fb84df0cb89795b87c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Possible log types.  <a href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">More...</a><br/></td></tr>
<tr class="separator:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a7c691d7de2a43bc5606e96cb15da3641">type_</a></td></tr>
<tr class="separator:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a56589612e0e4164bf80c3918a087d05a">begin_</a></td></tr>
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<tr class="memitem:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">QProgressDialog *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a76072b3919abcf01141ba68da8a001fd">dlg_</a></td></tr>
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<tr class="memitem:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">time_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a79bacf60c4109d7517590441c7f85f9c">last_invoke_</a></td></tr>
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<tr class="inherit_header pro_static_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_static_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Static Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a94eb3ef5ef94b83eb348dd00a2b53119">recursion_depth_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>DTA2D <a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter. </p>
<p><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for files with three tab/space-separated columns.</p>
<p>The default format is: retention time (seconds) , m/z , intensity.</p>
<p>If the first line starts with '#', a different order is defined by the the order of the keywords 'MIN' (retention time in minutes) or 'SEC' (retention time in seconds), 'MZ', and 'INT'.</p>
<p>Example: '#MZ MIN INT'</p>
<p>The peaks of one retention time have to be in subsequent lines. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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<p>Default constructor. </p>

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          <td class="memname">~<a class="el" href="classOpenMS_1_1DTA2DFile.html">DTA2DFile</a> </td>
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<p>Destructor. </p>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a>&amp; getOptions </td>
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<p>Mutable access to the options for loading/storing. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FileHandler.html#a408091416e0e1f6019abd59bdb6a9269">FileHandler::loadExperiment()</a>, and <a class="el" href="classOpenMS_1_1FileHandler.html#a4a8354ef45f8a0eac5a5038b3a025f37">FileHandler::storeExperiment()</a>.</p>

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<p>Non-mutable access to the options for loading/storing. </p>

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<p>Loads a map from a DTA2D file. </p>
<p><code>map</code> has to be a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> or have the same interface.</p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be opened </td></tr>
    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1ParseError.html" title="Parse Error exception. ">Exception::ParseError</a></td><td>is thrown if an error occurs during parsing </td></tr>
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<p>References <a class="el" href="classOpenMS_1_1String.html#a58599d37159ebc08a654fb2d25be92fe">String::has()</a>, <a class="el" href="classOpenMS_1_1String.html#ae1870a969417d19a33f225046a66a58d">String::hasPrefix()</a>, <a class="el" href="classOpenMS_1_1String.html#ae580d960e12c7f0ebc5c95931cf39ad5">String::split()</a>, <a class="el" href="classOpenMS_1_1String.html#a226b41d565aa586bd45aa7d046608511">String::substr()</a>, and <a class="el" href="classOpenMS_1_1String.html#a86864c88ee12eb322f1645f238c1dbe5">String::trim()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FileHandler.html#a408091416e0e1f6019abd59bdb6a9269">FileHandler::loadExperiment()</a>.</p>

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<p>Stores a map in a DTA2D file. </p>
<p><code>map</code> has to be a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> or have the same interface.</p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToCreateFile.html" title="Unable to create file exception. ">Exception::UnableToCreateFile</a></td><td>is thrown if the file could not be created </td></tr>
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<p>References <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">OpenMS::precisionWrapper()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FileHandler.html#a4a8354ef45f8a0eac5a5038b3a025f37">FileHandler::storeExperiment()</a>.</p>

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          <td class="memname">void storeTIC </td>
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<p>Stores the TIC of a map in a DTA2D file. </p>
<p><code>map</code> has to be a <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> or have the same interface.</p>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToCreateFile.html" title="Unable to create file exception. ">Exception::UnableToCreateFile</a></td><td>is thrown if the file could not be created </td></tr>
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<p>References <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">OpenMS::precisionWrapper()</a>.</p>

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<h2 class="groupheader">Member Data Documentation</h2>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
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