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<a href="#pub-methods">Public Member Functions</a> &#124;
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<p>A base class for all classes handling default parameters.  
 <a href="classOpenMS_1_1DefaultParamHandler.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="DefaultParamHandler_8h_source.html">OpenMS/DATASTRUCTURES/DefaultParamHandler.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for DefaultParamHandler:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1DefaultParamHandler.png" usemap="#DefaultParamHandler_map" alt=""/>
  <map id="DefaultParamHandler_map" name="DefaultParamHandler_map">
<area href="classOpenMS_1_1BaseModel.html" alt="BaseModel&lt; 1 &gt;" shape="rect" coords="421,56,832,80"/>
<area href="classOpenMS_1_1BaseModel.html" alt="BaseModel&lt; 2 &gt;" shape="rect" coords="421,112,832,136"/>
<area href="classOpenMS_1_1AccurateMassSearchEngine.html" alt="AccurateMassSearchEngine" shape="rect" coords="421,168,832,192"/>
<area href="classOpenMS_1_1BaseGroupFinder.html" title="The base class of all element group finding algorithms. " alt="BaseGroupFinder" shape="rect" coords="421,224,832,248"/>
<area href="classOpenMS_1_1BaseLabeler.html" title="Abstract base class for all kinds of labeling techniques. " alt="BaseLabeler" shape="rect" coords="421,280,832,304"/>
<area href="classOpenMS_1_1BaseModel.html" title="Abstract base class for all D-dimensional models. " alt="BaseModel&lt; D &gt;" shape="rect" coords="421,336,832,360"/>
<area href="classOpenMS_1_1BaseSuperimposer.html" title="The base class of all superimposer algorithms. " alt="BaseSuperimposer" shape="rect" coords="421,392,832,416"/>
<area href="classOpenMS_1_1BernNorm.html" title="BernNorm scales the peaks by ranking them and then scaling them according to rank. " alt="BernNorm" shape="rect" coords="421,448,832,472"/>
<area href="classOpenMS_1_1BinnedSpectrumCompareFunctor.html" title="Base class for compare functors of BinnedSpectra. " alt="BinnedSpectrumCompareFunctor" shape="rect" coords="421,504,832,528"/>
<area href="classOpenMS_1_1CompNovoIdentificationBase.html" title="run with CompNovoIdentificationBase " alt="CompNovoIdentificationBase" shape="rect" coords="421,560,832,584"/>
<area href="classOpenMS_1_1CompNovoIonScoringBase.html" title="run with CompNovoIonScoringBase " alt="CompNovoIonScoringBase" shape="rect" coords="421,616,832,640"/>
<area href="classOpenMS_1_1ConsensusID.html" title="Calculates a consensus ID from several ID runs. " alt="ConsensusID" shape="rect" coords="421,672,832,696"/>
<area href="classOpenMS_1_1DeNovoAlgorithm.html" title="Base class for ion scoring implementation for de novo algorithms. " alt="DeNovoAlgorithm" shape="rect" coords="421,728,832,752"/>
<area href="classOpenMS_1_1DeNovoIdentification.html" title="Base class for de novo identification. " alt="DeNovoIdentification" shape="rect" coords="421,784,832,808"/>
<area href="classOpenMS_1_1DeNovoIonScoring.html" title="Base class for ion scoring implementation for de novo algorithms. " alt="DeNovoIonScoring" shape="rect" coords="421,840,832,864"/>
<area href="classOpenMS_1_1DeNovoPostScoring.html" title="Base class for ion scoring implementation for de novo algorithms. " alt="DeNovoPostScoring" shape="rect" coords="421,896,832,920"/>
<area href="classOpenMS_1_1DetectabilitySimulation.html" title="Simulates peptide detectability. " alt="DetectabilitySimulation" shape="rect" coords="421,952,832,976"/>
<area href="classOpenMS_1_1DiaPrescore.html" title="Scoring of an spectrum given library intensities of a transition group. " alt="DiaPrescore" shape="rect" coords="421,1008,832,1032"/>
<area href="classOpenMS_1_1DIAScoring.html" title="Scoring of an spectrum at the peak apex of an chromatographic elution peak. " alt="DIAScoring" shape="rect" coords="421,1064,832,1088"/>
<area href="classOpenMS_1_1DigestSimulation.html" title="Simulates protein digestion. " alt="DigestSimulation" shape="rect" coords="421,1120,832,1144"/>
<area href="classOpenMS_1_1ElutionPeakDetection.html" title="Extracts chromatographic peaks from a mass trace. " alt="ElutionPeakDetection" shape="rect" coords="421,1176,832,1200"/>
<area href="classOpenMS_1_1FalseDiscoveryRate.html" title="Calculates an FDR from identifications. " alt="FalseDiscoveryRate" shape="rect" coords="421,1232,832,1256"/>
<area href="classOpenMS_1_1FeaFiModule.html" title="Implements a module of the FeatureFinder algorithm. " alt="FeaFiModule&lt; PeakType, FeatureType &gt;" shape="rect" coords="421,1288,832,1312"/>
<area href="classOpenMS_1_1FeatureDeconvolution.html" title="An algorithm to decharge features (i.e. as found by FeatureFinder). " alt="FeatureDeconvolution" shape="rect" coords="421,1344,832,1368"/>
<area href="classOpenMS_1_1FeatureDistance.html" title="A functor class for the calculation of distances between features or consensus features. " alt="FeatureDistance" shape="rect" coords="421,1400,832,1424"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. " alt="FeatureFinderAlgorithm&lt; PeakType, FeatureType &gt;" shape="rect" coords="421,1456,832,1480"/>
<area href="classOpenMS_1_1FeatureFindingMetabo.html" alt="FeatureFindingMetabo" shape="rect" coords="421,1512,832,1536"/>
<area href="classOpenMS_1_1FeatureGroupingAlgorithm.html" title="Base class for all feature grouping algorithms. " alt="FeatureGroupingAlgorithm" shape="rect" coords="421,1568,832,1592"/>
<area href="classOpenMS_1_1FilterFunctor.html" title="A FilterFunctor extracts some spectrum characteristics for quality assessment. " alt="FilterFunctor" shape="rect" coords="421,1624,832,1648"/>
<area href="classOpenMS_1_1Fitter1D.html" title="Abstract base class for all 1D-dimensional model fitter. " alt="Fitter1D" shape="rect" coords="421,1680,832,1704"/>
<area href="classOpenMS_1_1GaussFilter.html" title="This class represents a Gaussian lowpass-filter which works on uniform as well as on non-uniform prof..." alt="GaussFilter" shape="rect" coords="421,1736,832,1760"/>
<area href="classOpenMS_1_1IDDecoyProbability.html" title="IDDecoyProbability calculates probabilities using decoy approach. " alt="IDDecoyProbability" shape="rect" coords="421,1792,832,1816"/>
<area href="classOpenMS_1_1IDEvaluationBase.html" title="Main window of the IDEvaluation tool. " alt="IDEvaluationBase" shape="rect" coords="421,1848,832,1872"/>
<area href="classOpenMS_1_1IDMapper.html" title="Annotates an MSExperiment, FeatureMap or ConsensusMap with peptide identifications. " alt="IDMapper" shape="rect" coords="421,1904,832,1928"/>
<area href="classOpenMS_1_1IDRipper.html" title="Ripping protein/peptide identification according their file origin. " alt="IDRipper" shape="rect" coords="421,1960,832,1984"/>
<area href="classOpenMS_1_1InclusionExclusionList.html" title="Provides functionalty for writing inclusion or exclusion lists. " alt="InclusionExclusionList" shape="rect" coords="421,2016,832,2040"/>
<area href="classOpenMS_1_1InternalCalibration.html" title="A simple calibration method using linear interpolation of given reference masses. ..." alt="InternalCalibration" shape="rect" coords="421,2072,832,2096"/>
<area href="classOpenMS_1_1IonizationSimulation.html" title="Simulates Protein ionization. " alt="IonizationSimulation" shape="rect" coords="421,2128,832,2152"/>
<area href="classOpenMS_1_1IsobaricChannelExtractor.html" title="Extracts individual channels from MS/MS spectra for isobaric labeling experiments. " alt="IsobaricChannelExtractor" shape="rect" coords="421,2184,832,2208"/>
<area href="classOpenMS_1_1IsobaricQuantifier.html" title="Given the extracted channel intensities the IsobaricQuantifier corrects and normalizes the intensitie..." alt="IsobaricQuantifier" shape="rect" coords="421,2240,832,2264"/>
<area href="classOpenMS_1_1IsobaricQuantitationMethod.html" title="Abstract base class describing an isobaric quantitation method in terms of the used channels and an i..." alt="IsobaricQuantitationMethod" shape="rect" coords="421,2296,832,2320"/>
<area href="classOpenMS_1_1ItraqChannelExtractor.html" title="[experimental class] extracts the iTRAQ channels from tandem MS data and stores intensity values in a..." alt="ItraqChannelExtractor" shape="rect" coords="421,2352,832,2376"/>
<area href="classOpenMS_1_1ItraqQuantifier.html" title="Does post-processing on raw iTRAQ channel quantitation. " alt="ItraqQuantifier" shape="rect" coords="421,2408,832,2432"/>
<area href="classOpenMS_1_1LinearResampler.html" title="Linear Resampling of raw data. " alt="LinearResampler" shape="rect" coords="421,2464,832,2488"/>
<area href="classOpenMS_1_1LowessSmoothing.html" title="LOWESS (locally weighted scatterplot smoothing). " alt="LowessSmoothing" shape="rect" coords="421,2520,832,2544"/>
<area href="classOpenMS_1_1MapAlignmentAlgorithm.html" title="Base class for all map-alignment algorithms. " alt="MapAlignmentAlgorithm" shape="rect" coords="421,2576,832,2600"/>
<area href="classOpenMS_1_1MarkerMower.html" title="MarkerMower uses PeakMarker to find peaks, those that are not marked get removed. ..." alt="MarkerMower" shape="rect" coords="421,2632,832,2656"/>
<area href="classOpenMS_1_1MascotGenericFile.html" title="Mascot input file adapter. " alt="MascotGenericFile" shape="rect" coords="421,2688,832,2712"/>
<area href="classOpenMS_1_1MascotRemoteQuery.html" title="Class which handles the communication between OpenMS and the Mascot server. " alt="MascotRemoteQuery" shape="rect" coords="421,2744,832,2768"/>
<area href="classOpenMS_1_1MassDecompositionAlgorithm.html" title="Mass decomposition algorithm, given a mass it suggests possible compositions. " alt="MassDecompositionAlgorithm" shape="rect" coords="421,2800,832,2824"/>
<area href="classOpenMS_1_1MassTraceDetection.html" title="A mass trace extraction method that gathers peaks similar in m/z and moving along retention time..." alt="MassTraceDetection" shape="rect" coords="421,2856,832,2880"/>
<area href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html" title="Implements a mixture model of the inverse gumbel and the gauss distribution or a gaussian mixture..." alt="PosteriorErrorProbabilityModel" shape="rect" coords="421,2912,832,2936"/>
<area href="classOpenMS_1_1MorphologicalFilter.html" title="This class implements baseline filtering operations using methods from mathematical morphology..." alt="MorphologicalFilter" shape="rect" coords="421,2968,832,2992"/>
<area href="classOpenMS_1_1MRMFeatureFinderScoring.html" title="The MRMFeatureFinder finds and scores peaks of transitions that coelute. " alt="MRMFeatureFinderScoring" shape="rect" coords="421,3024,832,3048"/>
<area href="classOpenMS_1_1MRMFragmentSelection.html" title="This class can select appropriate fragment ions of an MS/MS spectrum of a peptide. " alt="MRMFragmentSelection" shape="rect" coords="421,3080,832,3104"/>
<area href="classOpenMS_1_1MRMTransitionGroupPicker.html" title="The MRMTransitionGroupPicker finds peaks in chromatograms that belong to the same precursors..." alt="MRMTransitionGroupPicker" shape="rect" coords="421,3136,832,3160"/>
<area href="classOpenMS_1_1MSPFile.html" title="File adapter for MSP files (NIST spectra library) " alt="MSPFile" shape="rect" coords="421,3192,832,3216"/>
<area href="classOpenMS_1_1MSSim.html" title="Central class for simulation of mass spectrometry experiments. " alt="MSSim" shape="rect" coords="421,3248,832,3272"/>
<area href="classOpenMS_1_1NLargest.html" title="NLargest removes all but the n largest peaks. " alt="NLargest" shape="rect" coords="421,3304,832,3328"/>
<area href="classOpenMS_1_1Normalizer.html" title="Normalizer normalizes the peak intensities. " alt="Normalizer" shape="rect" coords="421,3360,832,3384"/>
<area href="classOpenMS_1_1OfflinePrecursorIonSelection.html" title="Implements different algorithms for precursor ion selection. " alt="OfflinePrecursorIonSelection" shape="rect" coords="421,3416,832,3440"/>
<area href="classOpenMS_1_1OptimizePeakDeconvolution.html" title="This class provides the deconvolution of peak regions using non-linear optimization. " alt="OptimizePeakDeconvolution" shape="rect" coords="421,3472,832,3496"/>
<area href="classOpenMS_1_1ParentPeakMower.html" title="ParentPeakMower gets rid of high peaks that could stem from unfragmented precursor ions..." alt="ParentPeakMower" shape="rect" coords="421,3528,832,3552"/>
<area href="classOpenMS_1_1PeakMarker.html" title="PeakMarker marks peaks that seem to fulfill some criterion. " alt="PeakMarker" shape="rect" coords="421,3584,832,3608"/>
<area href="classOpenMS_1_1PeakPickerCWT.html" title="This class implements a peak picking algorithm using wavelet techniques. " alt="PeakPickerCWT" shape="rect" coords="421,3640,832,3664"/>
<area href="classOpenMS_1_1PeakPickerHiRes.html" title="This class implements a fast peak-picking algorithm best suited for high resolution MS data (FT-ICR-M..." alt="PeakPickerHiRes" shape="rect" coords="421,3696,832,3720"/>
<area href="classOpenMS_1_1PeakPickerSH.html" alt="PeakPickerSH" shape="rect" coords="421,3752,832,3776"/>
<area href="classOpenMS_1_1PeakSpectrumCompareFunctor.html" title="Base class for compare functors of spectra, that return a similiarity value for two spectra..." alt="PeakSpectrumCompareFunctor" shape="rect" coords="421,3808,832,3832"/>
<area href="classOpenMS_1_1PeptideAndProteinQuant.html" title="Helper class for peptide and protein quantification based on feature data annotated with IDs..." alt="PeptideAndProteinQuant" shape="rect" coords="421,3864,832,3888"/>
<area href="classOpenMS_1_1PILISCrossValidation.html" title="Implementation of a cross valdidation training for the PILIS model. " alt="PILISCrossValidation" shape="rect" coords="421,3920,832,3944"/>
<area href="classOpenMS_1_1PILISIdentification.html" title="This class actually implements a complete ProteinIdentification run with PILIS. " alt="PILISIdentification" shape="rect" coords="421,3976,832,4000"/>
<area href="classOpenMS_1_1PILISModel.html" title="This class implements the simulation of the spectra from PILIS. " alt="PILISModel" shape="rect" coords="421,4032,832,4056"/>
<area href="classOpenMS_1_1PILISModelGenerator.html" title="This class implements the simulation of the spectra from PILIS. " alt="PILISModelGenerator" shape="rect" coords="421,4088,832,4112"/>
<area href="classOpenMS_1_1PILISNeutralLossModel.html" title="This class implements the simulation of the spectra from PILIS. " alt="PILISNeutralLossModel" shape="rect" coords="421,4144,832,4168"/>
<area href="classOpenMS_1_1PILISScoring.html" title="This class actually implements the E-value based scoring of PILIS. " alt="PILISScoring" shape="rect" coords="421,4200,832,4224"/>
<area href="classOpenMS_1_1PrecursorIonSelection.html" title="This class implements different precursor ion selection strategies. " alt="PrecursorIonSelection" shape="rect" coords="421,4256,832,4280"/>
<area href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html" title="This class implements the database preprocessing needing for precursor ion selection. " alt="PrecursorIonSelectionPreprocessing" shape="rect" coords="421,4312,832,4336"/>
<area href="classOpenMS_1_1ProteinResolver.html" title="Helper class for peptide and protein quantification based on feature data annotated with IDs..." alt="ProteinResolver" shape="rect" coords="421,4368,832,4392"/>
<area href="classOpenMS_1_1ProtonDistributionModel.html" title="A proton distribution model to calculate the proton distribution over charged peptides. " alt="ProtonDistributionModel" shape="rect" coords="421,4424,832,4448"/>
<area href="classOpenMS_1_1PSLPFormulation.html" title="Implements ILP formulation of precursor selection problems. " alt="PSLPFormulation" shape="rect" coords="421,4480,832,4504"/>
<area href="classOpenMS_1_1QuantitativeExperimentalDesign.html" title="Merge files according to experimental design. " alt="QuantitativeExperimentalDesign" shape="rect" coords="421,4536,832,4560"/>
<area href="classOpenMS_1_1RawMSSignalSimulation.html" title="Simulates MS signals for a given set of peptides. " alt="RawMSSignalSimulation" shape="rect" coords="421,4592,832,4616"/>
<area href="classOpenMS_1_1RawTandemMSSignalSimulation.html" title="Simulates tandem MS signales for a given set of peptides. " alt="RawTandemMSSignalSimulation" shape="rect" coords="421,4648,832,4672"/>
<area href="classOpenMS_1_1RTSimulation.html" title="Simulates/Predicts retention times for peptides or peptide separation. " alt="RTSimulation" shape="rect" coords="421,4704,832,4728"/>
<area href="classOpenMS_1_1SavitzkyGolayFilter.html" title="Computes the Savitzky-Golay filter coefficients using QR decomposition. " alt="SavitzkyGolayFilter" shape="rect" coords="421,4760,832,4784"/>
<area href="classOpenMS_1_1Scaler.html" title="Scaler scales the peak by ranking the peaks and assigning intensity according to rank. " alt="Scaler" shape="rect" coords="421,4816,832,4840"/>
<area href="classOpenMS_1_1SignalToNoiseEstimator.html" title="This class represents the abstract base class of a signal to noise estimator. " alt="SignalToNoiseEstimator&lt; Container &gt;" shape="rect" coords="421,4872,832,4896"/>
<area href="classOpenMS_1_1SpectraIdentificationViewWidget.html" title="Tabular visualization / selection of identified specra. " alt="SpectraIdentificationViewWidget" shape="rect" coords="421,4928,832,4952"/>
<area href="classOpenMS_1_1SpectraMerger.html" title="Merges blocks of MS or MS2 spectra. " alt="SpectraMerger" shape="rect" coords="421,4984,832,5008"/>
<area href="classOpenMS_1_1SpectraMerger_1_1SpectraDistance__.html" alt="SpectraMerger::SpectraDistance_" shape="rect" coords="421,5040,832,5064"/>
<area href="classOpenMS_1_1SpectrumAlignment.html" title="Aligns the peaks of two spectra. " alt="SpectrumAlignment" shape="rect" coords="421,5096,832,5120"/>
<area href="classOpenMS_1_1SpectrumCanvas.html" title="Base class for visualization canvas classes. " alt="SpectrumCanvas" shape="rect" coords="421,5152,832,5176"/>
<area href="classOpenMS_1_1SqrtMower.html" title="Scales the intensity of peaks to the sqrt. " alt="SqrtMower" shape="rect" coords="421,5208,832,5232"/>
<area href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html" title="Simulates ms2 spectra with support vector machines. " alt="SvmTheoreticalSpectrumGenerator" shape="rect" coords="421,5264,832,5288"/>
<area href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorTrainer.html" title="Train SVM models that are used by SvmTheoreticalSpectrumGenerator. " alt="SvmTheoreticalSpectrumGeneratorTrainer" shape="rect" coords="421,5320,832,5344"/>
<area href="classOpenMS_1_1TheoreticalSpectrumGenerator.html" title="Generates theoretical spectra with various options. " alt="TheoreticalSpectrumGenerator" shape="rect" coords="421,5376,832,5400"/>
<area href="classOpenMS_1_1ThresholdMower.html" title="ThresholdMower removes all peaks below a threshold. " alt="ThresholdMower" shape="rect" coords="421,5432,832,5456"/>
<area href="classOpenMS_1_1TOFCalibration.html" title="This class implements an external calibration for TOF data using external calibrant spectra..." alt="TOFCalibration" shape="rect" coords="421,5488,832,5512"/>
<area href="classOpenMS_1_1TOPPASBase.html" title="Main window of the TOPPAS tool. " alt="TOPPASBase" shape="rect" coords="421,5544,832,5568"/>
<area href="classOpenMS_1_1TOPPViewBase.html" title="Main window of TOPPView tool. " alt="TOPPViewBase" shape="rect" coords="421,5600,832,5624"/>
<area href="classOpenMS_1_1TraceFitter.html" title="Abstract fitter for RT profile fitting. " alt="TraceFitter&lt; PeakType &gt;" shape="rect" coords="421,5656,832,5680"/>
<area href="classOpenMS_1_1TwoDOptimization.html" title="This class provides the two-dimensional optimization of the picked peak parameters. " alt="TwoDOptimization" shape="rect" coords="421,5712,832,5736"/>
<area href="classOpenMS_1_1WindowMower.html" title="WindowMower augments the highest peaks in a sliding or jumping window. " alt="WindowMower" shape="rect" coords="421,5768,832,5792"/>
<area href="classOpenMS_1_1SignalToNoiseEstimator.html" alt="SignalToNoiseEstimator&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;" shape="rect" coords="421,5824,832,5848"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor with name that is displayed in error messages.  <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator.  <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
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<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
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<tr class="memitem:abc8067511cfc949ae942ea2b08588f81"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameters.  <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
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<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the parameters.  <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the default parameters.  <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
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<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the name.  <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable access to the name.  <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the registered subsections.  <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d"><td class="mdescLeft">&#160;</td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method.  <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
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<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor.  <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
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Protected Attributes</h2></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for current parameters.  <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
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<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes!  <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes!  <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name that is displayed in error messages during the parameter checking.  <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no checking if parameters in done;.  <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
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<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;.  <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a7be5dbadf705bd918eea5b9213efddb4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7be5dbadf705bd918eea5b9213efddb4">DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a7be5dbadf705bd918eea5b9213efddb4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hidden default C'tor (class name parameter is required!)  <a href="#a7be5dbadf705bd918eea5b9213efddb4">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A base class for all classes handling default parameters. </p>
<p>This class facilitates the handling of parameters:</p>
<ul>
<li>it manages default parameter (defaults_)</li>
<li>it checks for valid parameters:<ul>
<li>unknown/misspelled parameter names</li>
<li>correct parameter type</li>
</ul>
</li>
</ul>
<p>range restrictions of numeric parameters</p>
<ul>
<li>valid values for string parameters (enum)</li>
</ul>
<p>subsections that are passed to other classes can be excluded from the check (subsections_)</p>
<ul>
<li>it keeps member variables in syncronicity with the parameters stored in param_</li>
<li>it helps to automatically create a doxygen documentation page for the parameters</li>
</ul>
<p>Extra member variables are needed if getting the value from param_ would be too slow e.g. when they are used in methods that are called very often.</p>
<p>No matter if you have extra variables or not, do the following:</p>
<ul>
<li>Set defaults_ and subsections_ in the derived classes' default constructor.</li>
<li>Make sure to set the 'advanced' flag of the parameters right in order to hide certain parameters from unexperienced users.</li>
<li>Set the range restrictions for numeric defaults and valid strings for string defaults (if possible)</li>
<li>Call <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba" title="Updates the parameters after the defaults have been set in the constructor. ">defaultsToParam_()</a> at the end of derived classes' default constructor. It copies the defaults to param_ (and calls <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d" title="This method is used to update extra member variables at the end of the setParameters() method...">updateMembers_()</a>).</li>
</ul>
<p>If you have extra member variables you need to syncronize with param_, do the following:</p>
<ul>
<li>Implement the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d" title="This method is used to update extra member variables at the end of the setParameters() method...">updateMembers_()</a> method. It is used after each change of param_ in order to update the extra member variables. If the base class is a <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> as well make sure to call the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d" title="This method is used to update extra member variables at the end of the setParameters() method...">updateMembers_()</a> method of the base class in the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d" title="This method is used to update extra member variables at the end of the setParameters() method...">updateMembers_()</a> method.</li>
<li>Call <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d" title="This method is used to update extra member variables at the end of the setParameters() method...">updateMembers_()</a> at the end of the derived classes' copy constructor and assignment operator.</li>
<li>If you need mutable access to the extra member variables, provide a set-method and make sure to set the corresponding value in param_ as well!</li>
</ul>
<p><b>Base</b> <b>classes:</b> <br/>
If you create a class <em>A</em> that is derived from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> and derive another class <em>B</em> for <em>A</em>, you should set use the setName(String) method to set the name used for error messages to <em>B</em>.</p>
<p><b>Parameter</b> <b>documentation:</b> <br/>
Each default parameter has to be documented in a comprehensive way. This is done using the <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790" title="Sets a value. ">Param::setValue</a> methods and the Param::setDescription method.</p>
<p><b>Flags:</b> <br/>
Flags (boolean parameters) are not supported directly. It's best to implement them as a string parameter with valid strings 'true' and 'false'. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>name</em></td><td>)</td>
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<p>Constructor with name that is displayed in error messages. </p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;&#160;</td>
          <td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Copy constructor. </p>

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          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
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<p>Destructor. </p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> </td>
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          <td class="paramname"></td><td>)</td>
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<p>Hidden default C'tor (class name parameter is required!) </p>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">void defaultsToParam_ </td>
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<p>Updates the parameters after the defaults have been set in the constructor. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a3ee942662a8e6bbd9a705201a1896666">FeatureFinderAlgorithmIsotopeWavelet&lt; OpenMS::Peak2D, FeatureType &gt;::FeatureFinderAlgorithmIsotopeWavelet()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a655f6cc951b2ed0b71161df3275dfe3f">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmMRM()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aea2bb0ee05df783538f89be9649dc3a6">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmPicked()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a4d08e05bcc07dc166d557ad059683c02">IDEvaluationBase::IDEvaluationBase()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a00b389ceb266aea7a8b43fb9a2d899e0">ModelFitter&lt; PeakType, FeatureType &gt;::ModelFitter()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a0b70d2dc8ef6292855b647ac5bc4d99b">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;::SignalToNoiseEstimatorMeanIterative()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a8b7fa875dfca7f82f62dc8d6fc530105">SignalToNoiseEstimatorMedian&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;::SignalToNoiseEstimatorMedian()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5d4e59b887e694af404c49d0a684fd97">SimpleExtender&lt; PeakType, FeatureType &gt;::SimpleExtender()</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a26be3e303b6eebf9cf1a0d2835fb4390">SimpleSeeder&lt; PeakType, FeatureType &gt;::SimpleSeeder()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, and <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a565c5faad2e89b819c32e1aa57cb615a">TOPPViewBase::TOPPViewBase()</a>.</p>

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<p>Non-mutable access to the default parameters. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a998e79e7149ca4ef1ca8fa1625ffa250">TOPPViewBase::annotateWithID()</a>, <a class="el" href="classOpenMS_1_1EmgScoring.html#a8dad78b01108d834ef591c7aae60a0d1">EmgScoring::getDefaults()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0e0fbb99ae3a40db8470dcdc0d5220b6">TOPPViewBase::initializeDefaultParameters_()</a>, and <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a26be3e303b6eebf9cf1a0d2835fb4390">SimpleSeeder&lt; PeakType, FeatureType &gt;::SimpleSeeder()</a>.</p>

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<p>Non-mutable access to the name. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter&lt; PeakType, FeatureType &gt;::fit()</a>.</p>

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<p>Non-mutable access to the parameters. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#abe2fce5095efeecbcd815817430058e0">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;::getDefaultParameters()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#abe2fce5095efeecbcd815817430058e0">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;::getDefaultParameters()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a4d08e05bcc07dc166d557ad059683c02">IDEvaluationBase::IDEvaluationBase()</a>, <a class="el" href="classOpenMS_1_1EmgScoring.html#a38a8356e73763a34e70aa5fad809eba0">EmgScoring::prepareFit_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;::run()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::run()</a>.</p>

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<p>Non-mutable access to the registered subsections. </p>

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<p>Assignment operator. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1BaseModel.html#aa77887521d929a9565d179067f19b4ef">BaseModel&lt; 2 &gt;::operator=()</a>, <a class="el" href="classOpenMS_1_1TraceFitter.html#ac9fed0a961481c6439dfc3b32422d89c">TraceFitter&lt; PeakType &gt;::operator=()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html#a1c1afcc57198be503f62003f39c728c4">SignalToNoiseEstimator&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;::operator=()</a>, and <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#a33ab7b0d22fa42979de8b9f849ba882f">OptimizePeakDeconvolution::operator=()</a>.</p>

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<p>Equality operator. </p>

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<p>Mutable access to the name. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a00b389ceb266aea7a8b43fb9a2d899e0">ModelFitter&lt; PeakType, FeatureType &gt;::ModelFitter()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a0b70d2dc8ef6292855b647ac5bc4d99b">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;::SignalToNoiseEstimatorMeanIterative()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a8b7fa875dfca7f82f62dc8d6fc530105">SignalToNoiseEstimatorMedian&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;::SignalToNoiseEstimatorMedian()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5d4e59b887e694af404c49d0a684fd97">SimpleExtender&lt; PeakType, FeatureType &gt;::SimpleExtender()</a>, and <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a26be3e303b6eebf9cf1a0d2835fb4390">SimpleSeeder&lt; PeakType, FeatureType &gt;::SimpleSeeder()</a>.</p>

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<p>Sets the parameters. </p>
<p>Before setting the parameters, missing parameters are filled up with default values. <br/>
 Then the parameters are checked for unknown parameters (warning) and violations of restrictions (exception) with the <a class="el" href="classOpenMS_1_1Param.html#a1b94fbaa3f9c9ef561b46897770ea08e">Param::checkDefaults()</a> method.</p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidParameter.html" title="Exception indicating that an invalid parameter was handed over to an algorithm. ">Exception::InvalidParameter</a></td><td>is thrown if errors occur during the check. </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a998e79e7149ca4ef1ca8fa1625ffa250">TOPPViewBase::annotateWithID()</a>, <a class="el" href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">ModelDescription&lt; 2 &gt;::createModel()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter&lt; PeakType, FeatureType &gt;::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a59dd43367e76a334f8f481b100a275d0">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::fitRT_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter&lt; PeakType, FeatureType &gt;::fitRT_()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#af3a6dd04dd533f5b5eead2736eefe91f">IDEvaluationBase::getPoints()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a4d08e05bcc07dc166d557ad059683c02">IDEvaluationBase::IDEvaluationBase()</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a6aca068dd3cf1a6c7e78091c9bdae961">SimpleSeeder&lt; PeakType, FeatureType &gt;::initialize_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPASBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPViewBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1SpectraMerger.html#abe04755c7518a6ee530902afccc9c2e6">SpectraMerger::mergeSpectra_()</a>, <a class="el" href="classOpenMS_1_1SpectraMerger.html#a600d56293a3a35b7ef362d788c35eb99">SpectraMerger::mergeSpectraPrecursors()</a>, <a class="el" href="classOpenMS_1_1TOFCalibration.html#ad64ffcd69513c45a65d9c2866729b3d9">TOFCalibration::pickAndCalibrate()</a>, <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a21e38df433d05118f343c33af60816e9">MRMFeatureFinderScoring::pickExperiment()</a>, <a class="el" href="classOpenMS_1_1EmgScoring.html#a38a8356e73763a34e70aa5fad809eba0">EmgScoring::prepareFit_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a001d4adf21652ff6cdd58efe56e4fb1c">FeatureFinder::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1EmgScoring.html#ad60792208a31598df5aed3dad7aff339">EmgScoring::setFitterParam()</a>, and <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad0c5e46e336d0faaea1ecb2a11e58cea">TOPPViewBase::showSpectrumGenerationDialog()</a>.</p>

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<p>This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. </p>
<p>Also call it at the end of the derived classes' copy constructor and assignment operator.</p>
<p>The default implementation is empty. </p>

<p>Reimplemented in <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a776f7572fc4f466e9527ca233471920d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MRMFeatureFinderScoring</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#aaf258e1a9846d9b238ee4b3005ad3ee9">FeatureFinderAlgorithmIsotopeWavelet&lt; PeakType, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#aaf258e1a9846d9b238ee4b3005ad3ee9">FeatureFinderAlgorithmIsotopeWavelet&lt; OpenMS::Peak2D, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter&lt; PeakType, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a776f7572fc4f466e9527ca233471920d">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#a776f7572fc4f466e9527ca233471920d">EGHTraceFitter&lt; PeakType &gt;</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;</a>, <a class="el" href="classOpenMS_1_1PeakPickerHiRes.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PeakPickerHiRes</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SignalToNoiseEstimatorMedian&lt; Container &gt;</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SignalToNoiseEstimatorMedian&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;</a>, <a class="el" href="classOpenMS_1_1IDMapper.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IDMapper</a>, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MapAlignmentAlgorithmSpectrumAlignment</a>, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#aaf258e1a9846d9b238ee4b3005ad3ee9">TwoDOptimization</a>, <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PeptideAndProteinQuant</a>, <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SvmTheoreticalSpectrumGenerator</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ProductModel&lt; 2 &gt;</a>, <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PILISCrossValidation</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender&lt; PeakType, FeatureType &gt;</a>, <a class="el" href="classOpenMS_1_1SavitzkyGolayFilter.html#a776f7572fc4f466e9527ca233471920d">SavitzkyGolayFilter</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a776f7572fc4f466e9527ca233471920d">GaussTraceFitter&lt; PeakType &gt;</a>, <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a776f7572fc4f466e9527ca233471920d">FeatureFindingMetabo</a>, <a class="el" href="classOpenMS_1_1LevMarqFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">LevMarqFitter1D</a>, <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PrecursorIonSelection</a>, <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#aaf258e1a9846d9b238ee4b3005ad3ee9">OptimizePeakDeconvolution</a>, <a class="el" href="classOpenMS_1_1GaussFilter.html#a776f7572fc4f466e9527ca233471920d">GaussFilter</a>, <a class="el" href="classOpenMS_1_1InterpolationModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">InterpolationModel</a>, <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a776f7572fc4f466e9527ca233471920d">AccurateMassSearchEngine</a>, <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MRMTransitionGroupPicker</a>, <a class="el" href="classOpenMS_1_1TraceFitter.html#a776f7572fc4f466e9527ca233471920d">TraceFitter&lt; PeakType &gt;</a>, <a class="el" href="classOpenMS_1_1PILISModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PILISModel</a>, <a class="el" href="classOpenMS_1_1LinearResampler.html#a776f7572fc4f466e9527ca233471920d">LinearResampler</a>, <a class="el" href="classOpenMS_1_1RTSimulation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">RTSimulation</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt; D &gt;</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt; 1 &gt;</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt; 2 &gt;</a>, <a class="el" href="classOpenMS_1_1StablePairFinder.html#a776f7572fc4f466e9527ca233471920d">StablePairFinder</a>, <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PeakPickerCWT</a>, <a class="el" href="classOpenMS_1_1IsobaricChannelExtractor.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IsobaricChannelExtractor</a>, <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PrecursorIonSelectionPreprocessing</a>, <a class="el" href="classOpenMS_1_1PILISIdentification.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PILISIdentification</a>, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">LmaIsotopeFitter1D</a>, <a class="el" href="classOpenMS_1_1DIAScoring.html#aaf258e1a9846d9b238ee4b3005ad3ee9">DIAScoring</a>, <a class="el" href="classOpenMS_1_1IsotopeModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IsotopeModel</a>, <a class="el" href="classOpenMS_1_1MaxLikeliFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MaxLikeliFitter1D</a>, <a class="el" href="classOpenMS_1_1IonizationSimulation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IonizationSimulation</a>, <a class="el" href="classOpenMS_1_1ItraqQuantifier.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ItraqQuantifier</a>, <a class="el" href="classOpenMS_1_1FeatureDistance.html#aaf258e1a9846d9b238ee4b3005ad3ee9">FeatureDistance</a>, <a class="el" href="classOpenMS_1_1PILISNeutralLossModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">PILISNeutralLossModel</a>, <a class="el" href="classOpenMS_1_1MSSim.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MSSim</a>, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">LmaIsotopeModel</a>, <a class="el" href="classOpenMS_1_1SimplePairFinder.html#a776f7572fc4f466e9527ca233471920d">SimplePairFinder</a>, <a class="el" href="classOpenMS_1_1Fitter1D.html#a776f7572fc4f466e9527ca233471920d">Fitter1D</a>, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ExtendedIsotopeModel</a>, <a class="el" href="classOpenMS_1_1EGHFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">EGHFitter1D</a>, <a class="el" href="classOpenMS_1_1EmgFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">EmgFitter1D</a>, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ITRAQLabeler</a>, <a class="el" href="classOpenMS_1_1LmaGaussFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">LmaGaussFitter1D</a>, <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#aaf258e1a9846d9b238ee4b3005ad3ee9">CompNovoIonScoringBase</a>, <a class="el" href="classOpenMS_1_1EGHModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">EGHModel</a>, <a class="el" href="classOpenMS_1_1SILACLabeler.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SILACLabeler</a>, <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aaf258e1a9846d9b238ee4b3005ad3ee9">FeatureDeconvolution</a>, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ICPLLabeler</a>, <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">RawMSSignalSimulation</a>, <a class="el" href="classOpenMS_1_1BiGaussModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">BiGaussModel</a>, <a class="el" href="classOpenMS_1_1EmgModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">EmgModel</a>, <a class="el" href="classOpenMS_1_1LmaGaussModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">LmaGaussModel</a>, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#a776f7572fc4f466e9527ca233471920d">MapAlignmentAlgorithmPoseClustering</a>, <a class="el" href="classOpenMS_1_1GaussModel.html#aaf258e1a9846d9b238ee4b3005ad3ee9">GaussModel</a>, <a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html#aaf258e1a9846d9b238ee4b3005ad3ee9">CompNovoIdentificationCID</a>, <a class="el" href="classOpenMS_1_1NLargest.html#aaf258e1a9846d9b238ee4b3005ad3ee9">NLargest</a>, <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#aaf258e1a9846d9b238ee4b3005ad3ee9">TMTSixPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1MassDecompositionAlgorithm.html#aaf258e1a9846d9b238ee4b3005ad3ee9">MassDecompositionAlgorithm</a>, <a class="el" href="classOpenMS_1_1ItraqChannelExtractor.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ItraqChannelExtractor</a>, <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ItraqFourPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#aaf258e1a9846d9b238ee4b3005ad3ee9">CompNovoIdentificationBase</a>, <a class="el" href="classOpenMS_1_1DetectabilitySimulation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">DetectabilitySimulation</a>, <a class="el" href="classOpenMS_1_1ExtendedIsotopeFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">ExtendedIsotopeFitter1D</a>, <a class="el" href="classOpenMS_1_1MascotRemoteQuery.html#a776f7572fc4f466e9527ca233471920d">MascotRemoteQuery</a>, <a class="el" href="classOpenMS_1_1BiGaussFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">BiGaussFitter1D</a>, <a class="el" href="classOpenMS_1_1MassTraceDetection.html#a776f7572fc4f466e9527ca233471920d">MassTraceDetection</a>, <a class="el" href="classOpenMS_1_1IsotopeFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IsotopeFitter1D</a>, <a class="el" href="classOpenMS_1_1ElutionPeakDetection.html#a776f7572fc4f466e9527ca233471920d">ElutionPeakDetection</a>, <a class="el" href="classOpenMS_1_1IsobaricQuantifier.html#aaf258e1a9846d9b238ee4b3005ad3ee9">IsobaricQuantifier</a>, <a class="el" href="classOpenMS_1_1SpectraMerger_1_1SpectraDistance__.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SpectraMerger::SpectraDistance_</a>, <a class="el" href="classOpenMS_1_1GaussFitter1D.html#aaf258e1a9846d9b238ee4b3005ad3ee9">GaussFitter1D</a>, <a class="el" href="classOpenMS_1_1DiaPrescore.html#aaf258e1a9846d9b238ee4b3005ad3ee9">DiaPrescore</a>, and <a class="el" href="classOpenMS_1_1LowessSmoothing.html#a776f7572fc4f466e9527ca233471920d">LowessSmoothing</a>.</p>

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<h2 class="groupheader">Member Data Documentation</h2>
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<p>If this member is set to false no checking if parameters in done;. </p>
<p>The only reason to set this member to false is that the derived class has no parameters! However, if a grand-child has defaults and you are using a base class cast, checking will not be done when casting back to grand-child. To just omit the warning, use 'warn_empty_defaults_' </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#a27120a1be410ba8c6fba4fc9fcbe57c2">FeatureFinderAlgorithmSH&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSH()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#aa62472895cc326454e469c7a548560fe">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSimple()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac204820010faf324ef3f9b7c7f3056d5">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSimplest()</a>.</p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1Param.html">Param</a> defaults_</td>
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<p>Container for default parameters. This member should be filled in the constructor of derived classes! </p>
<dl class="section note"><dt>Note</dt><dd>call the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba" title="Updates the parameters after the defaults have been set in the constructor. ">defaultsToParam_()</a> method at the end of the constructor in order to copy the defaults to param_. </dd></dl>

<p>Referenced by <a class="el" href="classOpenMS_1_1BaseModel.html#a4022784bf4c4e048bc478d31db45e833">BaseModel&lt; 2 &gt;::BaseModel()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a3ee942662a8e6bbd9a705201a1896666">FeatureFinderAlgorithmIsotopeWavelet&lt; OpenMS::Peak2D, FeatureType &gt;::FeatureFinderAlgorithmIsotopeWavelet()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a655f6cc951b2ed0b71161df3275dfe3f">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmMRM()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aea2bb0ee05df783538f89be9649dc3a6">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmPicked()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#a27120a1be410ba8c6fba4fc9fcbe57c2">FeatureFinderAlgorithmSH&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSH()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#aa62472895cc326454e469c7a548560fe">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSimple()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac204820010faf324ef3f9b7c7f3056d5">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;::FeatureFinderAlgorithmSimplest()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#abe2fce5095efeecbcd815817430058e0">FeatureFinderAlgorithm&lt; PeakType, FeatureType &gt;::getDefaultParameters()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a4d08e05bcc07dc166d557ad059683c02">IDEvaluationBase::IDEvaluationBase()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0e0fbb99ae3a40db8470dcdc0d5220b6">TOPPViewBase::initializeDefaultParameters_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a00b389ceb266aea7a8b43fb9a2d899e0">ModelFitter&lt; PeakType, FeatureType &gt;::ModelFitter()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a0b70d2dc8ef6292855b647ac5bc4d99b">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;::SignalToNoiseEstimatorMeanIterative()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a8b7fa875dfca7f82f62dc8d6fc530105">SignalToNoiseEstimatorMedian&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;::SignalToNoiseEstimatorMedian()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5d4e59b887e694af404c49d0a684fd97">SimpleExtender&lt; PeakType, FeatureType &gt;::SimpleExtender()</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a26be3e303b6eebf9cf1a0d2835fb4390">SimpleSeeder&lt; PeakType, FeatureType &gt;::SimpleSeeder()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, and <a class="el" href="classOpenMS_1_1TraceFitter.html#a113c8da1eadad990ed5c5c3fbfd5c2df">TraceFitter&lt; PeakType &gt;::TraceFitter()</a>.</p>

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<p>Name that is displayed in error messages during the parameter checking. </p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1Param.html">Param</a> param_</td>
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<p>Container for current parameters. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#afe89e2ae7174e81f9dea2bbc9a94c43d">TOPPViewBase::addData()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0931a9c806c4666cdec3f3910604ac2d">TOPPViewBase::addRecentFile_()</a>, <a class="el" href="classOpenMS_1_1InternalCalibration.html#a2157a7fbbba00561b9bf8b26b469786d">InternalCalibration::calibrateMapGlobally()</a>, <a class="el" href="classOpenMS_1_1InternalCalibration.html#a1651981607d6c86252b9ab64e5f7996c">InternalCalibration::calibrateMapSpectrumwise()</a>, <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#acca2e18b840cc4b903f2958efca7aa1a">OfflinePrecursorIonSelection::checkMassRanges_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad832d6128e519d1c6a7fefd89158c37e">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::chooseTraceFitter_()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a06f09695cf83b5a79005b087d1603017">TOPPViewBase::connectToDB_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a520ad36c37273100004a5dca3c2a6c24">ModelFitter&lt; PeakType, FeatureType &gt;::evaluate_()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a2383acb90129b0b0495e50cbee93522f">IDEvaluationBase::exportAsImage()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender&lt; PeakType, FeatureType &gt;::extend()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a26fb52355d1e3f483d9e9cf9d1cf6e25">TOPPViewBase::fileChanged_()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0e91b3140aaf54da238e52868e3d9ee3">TOPPViewBase::finishTOPPToolExecution()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter&lt; PeakType, FeatureType &gt;::fit()</a>, <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#ae895e8f290c7f5869249e59a7b53c417">OfflinePrecursorIonSelection::getMassRanges()</a>, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#af3a6dd04dd533f5b5eead2736eefe91f">IDEvaluationBase::getPoints()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#acb86ed50dee9cf5de4a51e1b5c618b17">TOPPViewBase::getSpectrumParameters()</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a6aca068dd3cf1a6c7e78091c9bdae961">SimpleSeeder&lt; PeakType, FeatureType &gt;::initialize_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPASBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPViewBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#afc3ec85793adf0cdaacc5803e59f6c17">OfflinePrecursorIonSelection::makePrecursorSelectionForKnownLCMSMap()</a>, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a5678eb60386afb7f97145b361bd3947f">TwoDOptimization::optimize()</a>, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#adca2617ab638fed2467b9d57b1fe2cfa">TwoDOptimization::optimizeRegionsScanwise_()</a>, <a class="el" href="classOpenMS_1_1TOFCalibration.html#ad64ffcd69513c45a65d9c2866729b3d9">TOFCalibration::pickAndCalibrate()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#af51e5796d9cbf0a727839fa4585a0a03">TOPPViewBase::preferencesDialog()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSH&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPASBase::savePreferences()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPViewBase::savePreferences()</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a464bd13b1e846ea0bc7bb0632f8e7256">BaseModel&lt; 2 &gt;::setCutOff()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a84ac8c59d495c96e543ed84e2b3cf66e">TOPPViewBase::showTOPPDialog_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a565c5faad2e89b819c32e1aa57cb615a">TOPPViewBase::TOPPViewBase()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7b2218783c20babf5c6cfaee9b43f62a">TOPPASBase::updateCurrentPath()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a7b2218783c20babf5c6cfaee9b43f62a">TOPPViewBase::updateCurrentPath()</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a776f7572fc4f466e9527ca233471920d">BaseModel&lt; 2 &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1TraceFitter.html#a776f7572fc4f466e9527ca233471920d">TraceFitter&lt; PeakType &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender&lt; PeakType, FeatureType &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SignalToNoiseEstimatorMedian&lt; OpenMS::OpenMS::MSSpectrum&lt; PeakT &gt; &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#aaf258e1a9846d9b238ee4b3005ad3ee9">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter&lt; PeakType, FeatureType &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#aaf258e1a9846d9b238ee4b3005ad3ee9">FeatureFinderAlgorithmIsotopeWavelet&lt; OpenMS::Peak2D, FeatureType &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a776f7572fc4f466e9527ca233471920d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::updateMembers_()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a891bfd9f403f5f9e9e133b58631e14f9">TOPPViewBase::updateRecentMenu_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad608d4f3d2a370fe2c1672c7818146b4">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::writeFeatureDebugInfo_()</a>.</p>

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<p>Container for registered subsections. This member should be filled in the constructor of derived classes! </p>
<dl class="section note"><dt>Note</dt><dd>Do not add a ':' character at the end of subsections. </dd></dl>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0e0fbb99ae3a40db8470dcdc0d5220b6">TOPPViewBase::initializeDefaultParameters_()</a>.</p>

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<p>If this member is set to false no warning is emitted when defaults are empty;. </p>
<p>The only reason to set this member to false is that the derived class has no parameters! </p>
<dl class="section see"><dt>See Also</dt><dd><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd" title="If this member is set to false no checking if parameters in done;. ">check_defaults_</a> </dd></dl>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:29 using doxygen 1.8.5</font></TD>
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