1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384
|
<HTML>
<HEAD>
<TITLE>EdwardsLippertIteratorTryptic Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="classOpenMS_1_1EdwardsLippertIteratorTryptic-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">EdwardsLippertIteratorTryptic Class Reference</div> </div>
</div><!--header-->
<div class="contents">
<p><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html" title="finds all Peptide Candidates with given masses and given fasta file ">EdwardsLippertIterator</a> that only retrieves tryptic seqences.
<a href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#details">More...</a></p>
<p><code>#include <<a class="el" href="EdwardsLippertIteratorTryptic_8h_source.html">OpenMS/CHEMISTRY/EdwardsLippertIteratorTryptic.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for EdwardsLippertIteratorTryptic:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1EdwardsLippertIteratorTryptic.png" usemap="#EdwardsLippertIteratorTryptic_map" alt=""/>
<map id="EdwardsLippertIteratorTryptic_map" name="EdwardsLippertIteratorTryptic_map">
<area href="classOpenMS_1_1EdwardsLippertIterator.html" title="finds all Peptide Candidates with given masses and given fasta file " alt="EdwardsLippertIterator" shape="rect" coords="0,56,179,80"/>
<area href="classOpenMS_1_1PepIterator.html" title="Abstract base class for different peptide iterators. " alt="PepIterator" shape="rect" coords="0,0,179,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a4e377554e90437b3f0f2b9ccf47a512d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a4e377554e90437b3f0f2b9ccf47a512d">EdwardsLippertIteratorTryptic</a> ()</td></tr>
<tr class="memdesc:a4e377554e90437b3f0f2b9ccf47a512d"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#a4e377554e90437b3f0f2b9ccf47a512d">More...</a><br/></td></tr>
<tr class="separator:a4e377554e90437b3f0f2b9ccf47a512d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a149f703c8fea9495b8f65fe1406eece5"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a149f703c8fea9495b8f65fe1406eece5">EdwardsLippertIteratorTryptic</a> (const <a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> &rhs)</td></tr>
<tr class="memdesc:a149f703c8fea9495b8f65fe1406eece5"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a149f703c8fea9495b8f65fe1406eece5">More...</a><br/></td></tr>
<tr class="separator:a149f703c8fea9495b8f65fe1406eece5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a123166cd603e8687b249fb4e8055edf1"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a123166cd603e8687b249fb4e8055edf1">~EdwardsLippertIteratorTryptic</a> ()</td></tr>
<tr class="memdesc:a123166cd603e8687b249fb4e8055edf1"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a123166cd603e8687b249fb4e8055edf1">More...</a><br/></td></tr>
<tr class="separator:a123166cd603e8687b249fb4e8055edf1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a49e1c607b7db87cdaba62dd7237a2501"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a49e1c607b7db87cdaba62dd7237a2501">operator=</a> (const <a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> &rhs)</td></tr>
<tr class="memdesc:a49e1c607b7db87cdaba62dd7237a2501"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a49e1c607b7db87cdaba62dd7237a2501">More...</a><br/></td></tr>
<tr class="separator:a49e1c607b7db87cdaba62dd7237a2501"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaf772e5ec6d5592a9fb7eae11bf945a1"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#aaf772e5ec6d5592a9fb7eae11bf945a1">isDigestingEnd</a> (char aa1, char aa2)</td></tr>
<tr class="memdesc:aaf772e5ec6d5592a9fb7eae11bf945a1"><td class="mdescLeft"> </td><td class="mdescRight">indicates if trypsin will cat between the two amino acids <a href="#aaf772e5ec6d5592a9fb7eae11bf945a1">More...</a><br/></td></tr>
<tr class="separator:aaf772e5ec6d5592a9fb7eae11bf945a1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1EdwardsLippertIterator')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memitem:add167f2dfba4790474721a1cbd586d59 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#add167f2dfba4790474721a1cbd586d59">EdwardsLippertIterator</a> ()</td></tr>
<tr class="memdesc:add167f2dfba4790474721a1cbd586d59 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#add167f2dfba4790474721a1cbd586d59">More...</a><br/></td></tr>
<tr class="separator:add167f2dfba4790474721a1cbd586d59 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a44c1f7957c78b5559702d9be4b5408ac inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a44c1f7957c78b5559702d9be4b5408ac">EdwardsLippertIterator</a> (const <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a> &)</td></tr>
<tr class="memdesc:a44c1f7957c78b5559702d9be4b5408ac inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">Copy Constructor. <a href="#a44c1f7957c78b5559702d9be4b5408ac">More...</a><br/></td></tr>
<tr class="separator:a44c1f7957c78b5559702d9be4b5408ac inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a71f30695b983ddc3f82e6ff760406a6b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a71f30695b983ddc3f82e6ff760406a6b">~EdwardsLippertIterator</a> ()</td></tr>
<tr class="memdesc:a71f30695b983ddc3f82e6ff760406a6b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a71f30695b983ddc3f82e6ff760406a6b">More...</a><br/></td></tr>
<tr class="separator:a71f30695b983ddc3f82e6ff760406a6b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2468d86d946f361d96ea90bb8e6e28da inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a2468d86d946f361d96ea90bb8e6e28da">operator*</a> ()</td></tr>
<tr class="memdesc:a2468d86d946f361d96ea90bb8e6e28da inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">* operator for getting the value of the iterator <a href="#a2468d86d946f361d96ea90bb8e6e28da">More...</a><br/></td></tr>
<tr class="separator:a2468d86d946f361d96ea90bb8e6e28da inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a55f6d71bc104d273092993e29f301e72 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a55f6d71bc104d273092993e29f301e72">operator++</a> ()</td></tr>
<tr class="memdesc:a55f6d71bc104d273092993e29f301e72 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">opperator ++ for postincrement <a href="#a55f6d71bc104d273092993e29f301e72">More...</a><br/></td></tr>
<tr class="separator:a55f6d71bc104d273092993e29f301e72 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a72227229d40a649a89bde5f60d48782e inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a72227229d40a649a89bde5f60d48782e">operator++</a> (int i)</td></tr>
<tr class="memdesc:a72227229d40a649a89bde5f60d48782e inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">opperator ++ for preincrement <a href="#a72227229d40a649a89bde5f60d48782e">More...</a><br/></td></tr>
<tr class="separator:a72227229d40a649a89bde5f60d48782e inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7d238aef71f460f8ebe0c267b7b7792b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a7d238aef71f460f8ebe0c267b7b7792b">setFastaFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &f)</td></tr>
<tr class="memdesc:a7d238aef71f460f8ebe0c267b7b7792b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">setter for fasta file <a href="#a7d238aef71f460f8ebe0c267b7b7792b">More...</a><br/></td></tr>
<tr class="separator:a7d238aef71f460f8ebe0c267b7b7792b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5bac16112a17e0b3b01ba5e5468e744f inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a5bac16112a17e0b3b01ba5e5468e744f">getFastaFile</a> ()</td></tr>
<tr class="memdesc:a5bac16112a17e0b3b01ba5e5468e744f inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">getter for FASTA file <a href="#a5bac16112a17e0b3b01ba5e5468e744f">More...</a><br/></td></tr>
<tr class="separator:a5bac16112a17e0b3b01ba5e5468e744f inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0b331f554495174d4e957af367a22425 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a0b331f554495174d4e957af367a22425">setTolerance</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> t)</td></tr>
<tr class="memdesc:a0b331f554495174d4e957af367a22425 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">setter for tolerance <a href="#a0b331f554495174d4e957af367a22425">More...</a><br/></td></tr>
<tr class="separator:a0b331f554495174d4e957af367a22425 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3cf6b0a9ead1e00ecdf43310820955e7 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a3cf6b0a9ead1e00ecdf43310820955e7">getTolerance</a> ()</td></tr>
<tr class="memdesc:a3cf6b0a9ead1e00ecdf43310820955e7 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">getter for tolerance <a href="#a3cf6b0a9ead1e00ecdf43310820955e7">More...</a><br/></td></tr>
<tr class="separator:a3cf6b0a9ead1e00ecdf43310820955e7 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abed3a62ee31d0d1add508b20d932fae5 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#abed3a62ee31d0d1add508b20d932fae5">setSpectrum</a> (const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &s)</td></tr>
<tr class="memdesc:abed3a62ee31d0d1add508b20d932fae5 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">setter for spectrum <a href="#abed3a62ee31d0d1add508b20d932fae5">More...</a><br/></td></tr>
<tr class="separator:abed3a62ee31d0d1add508b20d932fae5 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae5d8ae6a47625445018d8a7e416aec1b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual const std::vector<br class="typebreak"/>
< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ae5d8ae6a47625445018d8a7e416aec1b">getSpectrum</a> ()</td></tr>
<tr class="memdesc:ae5d8ae6a47625445018d8a7e416aec1b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">getter for spectrum <a href="#ae5d8ae6a47625445018d8a7e416aec1b">More...</a><br/></td></tr>
<tr class="separator:ae5d8ae6a47625445018d8a7e416aec1b inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a50f45551c10ca30a0bc7f447e70188b1 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a50f45551c10ca30a0bc7f447e70188b1">begin</a> ()</td></tr>
<tr class="memdesc:a50f45551c10ca30a0bc7f447e70188b1 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">initializing iterator <a href="#a50f45551c10ca30a0bc7f447e70188b1">More...</a><br/></td></tr>
<tr class="separator:a50f45551c10ca30a0bc7f447e70188b1 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae078b21926e77272e3cc2792e8176e33 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ae078b21926e77272e3cc2792e8176e33">isAtEnd</a> ()</td></tr>
<tr class="memdesc:ae078b21926e77272e3cc2792e8176e33 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">indicates whether iterator is at end <a href="#ae078b21926e77272e3cc2792e8176e33">More...</a><br/></td></tr>
<tr class="separator:ae078b21926e77272e3cc2792e8176e33 inherit pub_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#aebe4326baeb556ac80ae9429d5037956">PepIterator</a> ()</td></tr>
<tr class="memdesc:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#aebe4326baeb556ac80ae9429d5037956">More...</a><br/></td></tr>
<tr class="separator:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a89afd5646a25e6d814456741c4687e31">~PepIterator</a> ()</td></tr>
<tr class="memdesc:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a89afd5646a25e6d814456741c4687e31">More...</a><br/></td></tr>
<tr class="separator:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#aa5ee57c068ee8f610d0bf9f231421760">PepIterator</a> (const <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> &source)</td></tr>
<tr class="memdesc:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#aa5ee57c068ee8f610d0bf9f231421760">More...</a><br/></td></tr>
<tr class="separator:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="memdesc:af73fd15708e50e77665070023a09cc87"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#af73fd15708e50e77665070023a09cc87">More...</a><br/></td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8655641304d0f901ffb687edca0b59f8"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a8655641304d0f901ffb687edca0b59f8">create</a> ()</td></tr>
<tr class="memdesc:a8655641304d0f901ffb687edca0b59f8"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#a8655641304d0f901ffb687edca0b59f8">More...</a><br/></td></tr>
<tr class="separator:a8655641304d0f901ffb687edca0b59f8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1EdwardsLippertIterator')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="memdesc:af73fd15708e50e77665070023a09cc87 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#af73fd15708e50e77665070023a09cc87">More...</a><br/></td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8655641304d0f901ffb687edca0b59f8 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a8655641304d0f901ffb687edca0b59f8">create</a> ()</td></tr>
<tr class="memdesc:a8655641304d0f901ffb687edca0b59f8 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#a8655641304d0f901ffb687edca0b59f8">More...</a><br/></td></tr>
<tr class="separator:a8655641304d0f901ffb687edca0b59f8 inherit pub_static_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">all children has to be registered here <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
<tr class="separator:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1EdwardsLippertIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1EdwardsLippertIterator')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memitem:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a></td></tr>
<tr class="separator:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a></td></tr>
<tr class="separator:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1EdwardsLippertIterator')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memitem:a63173babfe4e8063832f2ed405f80d91 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a63173babfe4e8063832f2ed405f80d91">next_</a> ()</td></tr>
<tr class="memdesc:a63173babfe4e8063832f2ed405f80d91 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">getting the next candidate <a href="#a63173babfe4e8063832f2ed405f80d91">More...</a><br/></td></tr>
<tr class="separator:a63173babfe4e8063832f2ed405f80d91 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a468aa064b555d0fd15e072ac6fd84d20 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a468aa064b555d0fd15e072ac6fd84d20">hasNext_</a> ()</td></tr>
<tr class="memdesc:a468aa064b555d0fd15e072ac6fd84d20 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">indicates if there will be a next element <a href="#a468aa064b555d0fd15e072ac6fd84d20">More...</a><br/></td></tr>
<tr class="separator:a468aa064b555d0fd15e072ac6fd84d20 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae798f8264b42bdbf0830121570a09a09 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ae798f8264b42bdbf0830121570a09a09">goToNextAA_</a> ()</td></tr>
<tr class="memdesc:ae798f8264b42bdbf0830121570a09a09 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">finds the next starting position where a digesting enzyme will cut the sequence <a href="#ae798f8264b42bdbf0830121570a09a09">More...</a><br/></td></tr>
<tr class="separator:ae798f8264b42bdbf0830121570a09a09 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0a6931a2f0abccd42cf54022538a4026 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a0a6931a2f0abccd42cf54022538a4026">isInSpectrum_</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &mass)</td></tr>
<tr class="memdesc:a0a6931a2f0abccd42cf54022538a4026 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">indicates if a mass is in spectrum <a href="#a0a6931a2f0abccd42cf54022538a4026">More...</a><br/></td></tr>
<tr class="separator:a0a6931a2f0abccd42cf54022538a4026 inherit pro_methods_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1EdwardsLippertIterator')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memitem:a77bf7467eb8490b89bc16a4565bfb210 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a77bf7467eb8490b89bc16a4565bfb210">f_file_</a></td></tr>
<tr class="memdesc:a77bf7467eb8490b89bc16a4565bfb210 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">fasta file location <a href="#a77bf7467eb8490b89bc16a4565bfb210">More...</a><br/></td></tr>
<tr class="separator:a77bf7467eb8490b89bc16a4565bfb210 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac721cab8a1772a2739c5ad71f307685b inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ac721cab8a1772a2739c5ad71f307685b">actual_pep_</a></td></tr>
<tr class="memdesc:ac721cab8a1772a2739c5ad71f307685b inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">actual peptide <a href="#ac721cab8a1772a2739c5ad71f307685b">More...</a><br/></td></tr>
<tr class="separator:ac721cab8a1772a2739c5ad71f307685b inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a54610da679df141855bfa1eb4be9a8f1 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a54610da679df141855bfa1eb4be9a8f1">spec_</a></td></tr>
<tr class="memdesc:a54610da679df141855bfa1eb4be9a8f1 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">given spectrum <a href="#a54610da679df141855bfa1eb4be9a8f1">More...</a><br/></td></tr>
<tr class="separator:a54610da679df141855bfa1eb4be9a8f1 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad71c965ded7781aca71019c3873bc535 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ad71c965ded7781aca71019c3873bc535">tol_</a></td></tr>
<tr class="memdesc:ad71c965ded7781aca71019c3873bc535 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">tolerance <a href="#ad71c965ded7781aca71019c3873bc535">More...</a><br/></td></tr>
<tr class="separator:ad71c965ded7781aca71019c3873bc535 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a82b500a04e1c860859dea2a5de81d486 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a82b500a04e1c860859dea2a5de81d486">masse_</a> [255]</td></tr>
<tr class="memdesc:a82b500a04e1c860859dea2a5de81d486 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">mass table <a href="#a82b500a04e1c860859dea2a5de81d486">More...</a><br/></td></tr>
<tr class="separator:a82b500a04e1c860859dea2a5de81d486 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa90b7cf7d5e734dbd7edd788d8cd77be inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#aa90b7cf7d5e734dbd7edd788d8cd77be">is_at_end_</a></td></tr>
<tr class="memdesc:aa90b7cf7d5e734dbd7edd788d8cd77be inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">indicates if iterator is at end <a href="#aa90b7cf7d5e734dbd7edd788d8cd77be">More...</a><br/></td></tr>
<tr class="separator:aa90b7cf7d5e734dbd7edd788d8cd77be inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1b2f85409e3ffcb4916d74dd7f542684 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a1b2f85409e3ffcb4916d74dd7f542684">f_iterator_</a></td></tr>
<tr class="memdesc:a1b2f85409e3ffcb4916d74dd7f542684 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a>. <a href="#a1b2f85409e3ffcb4916d74dd7f542684">More...</a><br/></td></tr>
<tr class="separator:a1b2f85409e3ffcb4916d74dd7f542684 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a89f7f9e14ec978a5f12c40dd7a21ee56 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a89f7f9e14ec978a5f12c40dd7a21ee56">f_entry_</a></td></tr>
<tr class="memdesc:a89f7f9e14ec978a5f12c40dd7a21ee56 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">actual fasta entry <a href="#a89f7f9e14ec978a5f12c40dd7a21ee56">More...</a><br/></td></tr>
<tr class="separator:a89f7f9e14ec978a5f12c40dd7a21ee56 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae2847b8c4992d9d40699554a6255d696 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ae2847b8c4992d9d40699554a6255d696">b_</a></td></tr>
<tr class="separator:ae2847b8c4992d9d40699554a6255d696 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a773d402b3a881e53092a4aa0647883c4 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a773d402b3a881e53092a4aa0647883c4">e_</a></td></tr>
<tr class="memdesc:a773d402b3a881e53092a4aa0647883c4 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">to ints representing a position within the actual string (b = begin, e = end) <a href="#a773d402b3a881e53092a4aa0647883c4">More...</a><br/></td></tr>
<tr class="separator:a773d402b3a881e53092a4aa0647883c4 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0b4cb059c8429516b5c1e3623db4e619 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a0b4cb059c8429516b5c1e3623db4e619">m_</a></td></tr>
<tr class="separator:a0b4cb059c8429516b5c1e3623db4e619 inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae23b695d905d82e0469e08265608f96c inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ae23b695d905d82e0469e08265608f96c">massMax_</a></td></tr>
<tr class="memdesc:ae23b695d905d82e0469e08265608f96c inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="mdescLeft"> </td><td class="mdescRight">mass and maximum masse <a href="#ae23b695d905d82e0469e08265608f96c">More...</a><br/></td></tr>
<tr class="separator:ae23b695d905d82e0469e08265608f96c inherit pro_attribs_classOpenMS_1_1EdwardsLippertIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html" title="finds all Peptide Candidates with given masses and given fasta file ">EdwardsLippertIterator</a> that only retrieves tryptic seqences. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="a4e377554e90437b3f0f2b9ccf47a512d"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>default constructor </p>
</div>
</div>
<a class="anchor" id="a149f703c8fea9495b8f65fe1406eece5"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>copy constructor </p>
</div>
</div>
<a class="anchor" id="a123166cd603e8687b249fb4e8055edf1"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>destructor </p>
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a8655641304d0f901ffb687edca0b59f8"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a>* create </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> </p>
<dl class="section return"><dt>Returns</dt><dd>poiter to new object </dd></dl>
</div>
</div>
<a class="anchor" id="af73fd15708e50e77665070023a09cc87"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static const <a class="el" href="classOpenMS_1_1String.html">String</a> getProductName </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> </p>
<dl class="section return"><dt>Returns</dt><dd>const string name of class </dd></dl>
</div>
</div>
<a class="anchor" id="aaf772e5ec6d5592a9fb7eae11bf945a1"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual bool isDigestingEnd </td>
<td>(</td>
<td class="paramtype">char </td>
<td class="paramname"><em>aa1</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">char </td>
<td class="paramname"><em>aa2</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>indicates if trypsin will cat between the two amino acids </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">aa1</td><td>first amino acid </td></tr>
<tr><td class="paramname">aa2</td><td>second amino acid </td></tr>
</table>
</dd>
</dl>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a47df1538f6e1b2ae27db5fe98a0b67aa">EdwardsLippertIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a49e1c607b7db87cdaba62dd7237a2501"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a>& operator= </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>assignment operator </p>
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|