1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
|
<HTML>
<HEAD>
<TITLE>FastaIteratorIntern Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-types">Public Types</a> |
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pro-attribs">Protected Attributes</a> |
<a href="classOpenMS_1_1FastaIteratorIntern-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">FastaIteratorIntern Class Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>Iterator for a FASTA file.
<a href="classOpenMS_1_1FastaIteratorIntern.html#details">More...</a></p>
<p><code>#include <<a class="el" href="FastaIteratorIntern_8h_source.html">OpenMS/FORMAT/FastaIteratorIntern.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for FastaIteratorIntern:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1FastaIteratorIntern.png" usemap="#FastaIteratorIntern_map" alt=""/>
<map id="FastaIteratorIntern_map" name="FastaIteratorIntern_map">
<area href="classOpenMS_1_1PepIterator.html" title="Abstract base class for different peptide iterators. " alt="PepIterator" shape="rect" coords="0,0,115,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a21b87598c52cebe4ab2ebc0bb1655e89"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a></td></tr>
<tr class="separator:a21b87598c52cebe4ab2ebc0bb1655e89"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a></td></tr>
<tr class="separator:a21b87598c52cebe4ab2ebc0bb1655e89 inherit pub_types_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a271951a7a5fa920b47c534ae5cd77eba"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a271951a7a5fa920b47c534ae5cd77eba">FastaIteratorIntern</a> ()</td></tr>
<tr class="memdesc:a271951a7a5fa920b47c534ae5cd77eba"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a271951a7a5fa920b47c534ae5cd77eba">More...</a><br/></td></tr>
<tr class="separator:a271951a7a5fa920b47c534ae5cd77eba"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab34199546d3ab3cce33879ed8579b945"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ab34199546d3ab3cce33879ed8579b945">FastaIteratorIntern</a> (const <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a> &)</td></tr>
<tr class="memdesc:ab34199546d3ab3cce33879ed8579b945"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#ab34199546d3ab3cce33879ed8579b945">More...</a><br/></td></tr>
<tr class="separator:ab34199546d3ab3cce33879ed8579b945"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a725b9749c22ccc377c053bb22014d2f6"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a725b9749c22ccc377c053bb22014d2f6">~FastaIteratorIntern</a> ()</td></tr>
<tr class="memdesc:a725b9749c22ccc377c053bb22014d2f6"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a725b9749c22ccc377c053bb22014d2f6">More...</a><br/></td></tr>
<tr class="separator:a725b9749c22ccc377c053bb22014d2f6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2468d86d946f361d96ea90bb8e6e28da"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a2468d86d946f361d96ea90bb8e6e28da">operator*</a> ()</td></tr>
<tr class="memdesc:a2468d86d946f361d96ea90bb8e6e28da"><td class="mdescLeft"> </td><td class="mdescRight">* Operator for derefering of iterator <a href="#a2468d86d946f361d96ea90bb8e6e28da">More...</a><br/></td></tr>
<tr class="separator:a2468d86d946f361d96ea90bb8e6e28da"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a55f6d71bc104d273092993e29f301e72"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a55f6d71bc104d273092993e29f301e72">operator++</a> ()</td></tr>
<tr class="memdesc:a55f6d71bc104d273092993e29f301e72"><td class="mdescLeft"> </td><td class="mdescRight">++ Operator for the iterator <a href="#a55f6d71bc104d273092993e29f301e72">More...</a><br/></td></tr>
<tr class="separator:a55f6d71bc104d273092993e29f301e72"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a72227229d40a649a89bde5f60d48782e"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a72227229d40a649a89bde5f60d48782e">operator++</a> (int i)</td></tr>
<tr class="memdesc:a72227229d40a649a89bde5f60d48782e"><td class="mdescLeft"> </td><td class="mdescRight">++ Operator for the iterator <a href="#a72227229d40a649a89bde5f60d48782e">More...</a><br/></td></tr>
<tr class="separator:a72227229d40a649a89bde5f60d48782e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7d238aef71f460f8ebe0c267b7b7792b"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a7d238aef71f460f8ebe0c267b7b7792b">setFastaFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &f)</td></tr>
<tr class="memdesc:a7d238aef71f460f8ebe0c267b7b7792b"><td class="mdescLeft"> </td><td class="mdescRight">setter for FASTA file <a href="#a7d238aef71f460f8ebe0c267b7b7792b">More...</a><br/></td></tr>
<tr class="separator:a7d238aef71f460f8ebe0c267b7b7792b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5bac16112a17e0b3b01ba5e5468e744f"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a5bac16112a17e0b3b01ba5e5468e744f">getFastaFile</a> ()</td></tr>
<tr class="memdesc:a5bac16112a17e0b3b01ba5e5468e744f"><td class="mdescLeft"> </td><td class="mdescRight">getter for FASTA file <a href="#a5bac16112a17e0b3b01ba5e5468e744f">More...</a><br/></td></tr>
<tr class="separator:a5bac16112a17e0b3b01ba5e5468e744f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad8afbc78c6c6e4e0000d7b667751bac9"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ad8afbc78c6c6e4e0000d7b667751bac9">setSpectrum</a> (const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > &)</td></tr>
<tr class="memdesc:ad8afbc78c6c6e4e0000d7b667751bac9"><td class="mdescLeft"> </td><td class="mdescRight">setter for spectrum <a href="#ad8afbc78c6c6e4e0000d7b667751bac9">More...</a><br/></td></tr>
<tr class="separator:ad8afbc78c6c6e4e0000d7b667751bac9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae5d8ae6a47625445018d8a7e416aec1b"><td class="memItemLeft" align="right" valign="top">virtual const std::vector<br class="typebreak"/>
< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ae5d8ae6a47625445018d8a7e416aec1b">getSpectrum</a> ()</td></tr>
<tr class="memdesc:ae5d8ae6a47625445018d8a7e416aec1b"><td class="mdescLeft"> </td><td class="mdescRight">getter for spectrum <a href="#ae5d8ae6a47625445018d8a7e416aec1b">More...</a><br/></td></tr>
<tr class="separator:ae5d8ae6a47625445018d8a7e416aec1b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac9938ec54ef18bdf4bf4c301ec658546"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ac9938ec54ef18bdf4bf4c301ec658546">setTolerance</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>)</td></tr>
<tr class="memdesc:ac9938ec54ef18bdf4bf4c301ec658546"><td class="mdescLeft"> </td><td class="mdescRight">setter for tolerance <a href="#ac9938ec54ef18bdf4bf4c301ec658546">More...</a><br/></td></tr>
<tr class="separator:ac9938ec54ef18bdf4bf4c301ec658546"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3cf6b0a9ead1e00ecdf43310820955e7"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a3cf6b0a9ead1e00ecdf43310820955e7">getTolerance</a> ()</td></tr>
<tr class="memdesc:a3cf6b0a9ead1e00ecdf43310820955e7"><td class="mdescLeft"> </td><td class="mdescRight">getter for tolerance <a href="#a3cf6b0a9ead1e00ecdf43310820955e7">More...</a><br/></td></tr>
<tr class="separator:a3cf6b0a9ead1e00ecdf43310820955e7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a50f45551c10ca30a0bc7f447e70188b1"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a50f45551c10ca30a0bc7f447e70188b1">begin</a> ()</td></tr>
<tr class="memdesc:a50f45551c10ca30a0bc7f447e70188b1"><td class="mdescLeft"> </td><td class="mdescRight">initializing of iterator <a href="#a50f45551c10ca30a0bc7f447e70188b1">More...</a><br/></td></tr>
<tr class="separator:a50f45551c10ca30a0bc7f447e70188b1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae078b21926e77272e3cc2792e8176e33"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ae078b21926e77272e3cc2792e8176e33">isAtEnd</a> ()</td></tr>
<tr class="memdesc:ae078b21926e77272e3cc2792e8176e33"><td class="mdescLeft"> </td><td class="mdescRight">indicates whether iterator is at end <a href="#ae078b21926e77272e3cc2792e8176e33">More...</a><br/></td></tr>
<tr class="separator:ae078b21926e77272e3cc2792e8176e33"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#aebe4326baeb556ac80ae9429d5037956">PepIterator</a> ()</td></tr>
<tr class="memdesc:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#aebe4326baeb556ac80ae9429d5037956">More...</a><br/></td></tr>
<tr class="separator:aebe4326baeb556ac80ae9429d5037956 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a89afd5646a25e6d814456741c4687e31">~PepIterator</a> ()</td></tr>
<tr class="memdesc:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a89afd5646a25e6d814456741c4687e31">More...</a><br/></td></tr>
<tr class="separator:a89afd5646a25e6d814456741c4687e31 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#aa5ee57c068ee8f610d0bf9f231421760">PepIterator</a> (const <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> &source)</td></tr>
<tr class="memdesc:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#aa5ee57c068ee8f610d0bf9f231421760">More...</a><br/></td></tr>
<tr class="separator:aa5ee57c068ee8f610d0bf9f231421760 inherit pub_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a65b642fcdfcf11a9a34d1d66bfad4da3"><td class="memItemLeft" align="right" valign="top">static const std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a65b642fcdfcf11a9a34d1d66bfad4da3">getProductName</a> ()</td></tr>
<tr class="memdesc:a65b642fcdfcf11a9a34d1d66bfad4da3"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#a65b642fcdfcf11a9a34d1d66bfad4da3">More...</a><br/></td></tr>
<tr class="separator:a65b642fcdfcf11a9a34d1d66bfad4da3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8655641304d0f901ffb687edca0b59f8"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a8655641304d0f901ffb687edca0b59f8">create</a> ()</td></tr>
<tr class="memdesc:a8655641304d0f901ffb687edca0b59f8"><td class="mdescLeft"> </td><td class="mdescRight">needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> <a href="#a8655641304d0f901ffb687edca0b59f8">More...</a><br/></td></tr>
<tr class="separator:a8655641304d0f901ffb687edca0b59f8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1PepIterator"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1PepIterator')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="mdescLeft"> </td><td class="mdescRight">all children has to be registered here <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
<tr class="separator:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PepIterator"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:abeb892f8abd86bd20277c1fc96944c10"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#abeb892f8abd86bd20277c1fc96944c10">fasta_file_</a></td></tr>
<tr class="memdesc:abeb892f8abd86bd20277c1fc96944c10"><td class="mdescLeft"> </td><td class="mdescRight">location of the fasta file <a href="#abeb892f8abd86bd20277c1fc96944c10">More...</a><br/></td></tr>
<tr class="separator:abeb892f8abd86bd20277c1fc96944c10"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7ba6283c04f33a9862039d1f6837b1ff"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a7ba6283c04f33a9862039d1f6837b1ff">entrys_</a></td></tr>
<tr class="memdesc:a7ba6283c04f33a9862039d1f6837b1ff"><td class="mdescLeft"> </td><td class="mdescRight">content of fasta file <a href="#a7ba6283c04f33a9862039d1f6837b1ff">More...</a><br/></td></tr>
<tr class="separator:a7ba6283c04f33a9862039d1f6837b1ff"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af6893a80dff1bccfc4b1cf33424acd91"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> >::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#af6893a80dff1bccfc4b1cf33424acd91">it_</a></td></tr>
<tr class="memdesc:af6893a80dff1bccfc4b1cf33424acd91"><td class="mdescLeft"> </td><td class="mdescRight">iterator over fasta file content <a href="#af6893a80dff1bccfc4b1cf33424acd91">More...</a><br/></td></tr>
<tr class="separator:af6893a80dff1bccfc4b1cf33424acd91"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Iterator for a FASTA file. </p>
<p>In comparision to <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> the FASTA file will be loaded first and stored to RAM, while the <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> just iterates over the FASTA file without loading it completly to memory.</p>
<dl class="section see"><dt>See Also</dt><dd><a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> </dd></dl>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
<a class="anchor" id="a21b87598c52cebe4ab2ebc0bb1655e89"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">typedef std::pair<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1String.html">String</a>> <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a></td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="a271951a7a5fa920b47c534ae5cd77eba"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>constructor </p>
</div>
</div>
<a class="anchor" id="ab34199546d3ab3cce33879ed8579b945"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>copy constructor </p>
</div>
</div>
<a class="anchor" id="a725b9749c22ccc377c053bb22014d2f6"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>constructor </p>
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a50f45551c10ca30a0bc7f447e70188b1"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual bool begin </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>initializing of iterator </p>
<dl class="section return"><dt>Returns</dt><dd>true if everything went rigth </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidIterator.html" title="Invalid iterator exception. ">Exception::InvalidIterator</a></td><td>if fastaFile was not set </td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#ae8a0d9ca63f8bb3de100e347c3f3bca4">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a8655641304d0f901ffb687edca0b59f8"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a>* create </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> </p>
<dl class="section return"><dt>Returns</dt><dd>poiter to new object </dd></dl>
</div>
</div>
<a class="anchor" id="a5bac16112a17e0b3b01ba5e5468e744f"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="classOpenMS_1_1String.html">String</a> getFastaFile </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>getter for FASTA file </p>
<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> with file location </dd></dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a9b9d24053affd496e54afedfed47f3e0">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a65b642fcdfcf11a9a34d1d66bfad4da3"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static const std::string getProductName </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a> </p>
<dl class="section return"><dt>Returns</dt><dd>const string name of class </dd></dl>
</div>
</div>
<a class="anchor" id="ae5d8ae6a47625445018d8a7e416aec1b"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual const std::vector<<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>>& getSpectrum </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>getter for spectrum </p>
<dl class="section note"><dt>Note</dt><dd>note availeble for <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1NotImplemented.html" title="Not implemented exception. ">Exception::NotImplemented</a></td><td></td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a76ac9563a3dd40f2f02790bdb1e00fd9">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a3cf6b0a9ead1e00ecdf43310820955e7"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getTolerance </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>getter for tolerance </p>
<dl class="section note"><dt>Note</dt><dd>note availeble for <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> </dd></dl>
<dl class="section return"><dt>Returns</dt><dd>tolerance </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1NotImplemented.html" title="Not implemented exception. ">Exception::NotImplemented</a></td><td></td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a8b733898cb0fedb36fa2ca2c149c202e">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="ae078b21926e77272e3cc2792e8176e33"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual bool isAtEnd </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>indicates whether iterator is at end </p>
<dl class="section return"><dt>Returns</dt><dd>bool true if interator is at end </dd></dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a2c60e21a5b7f6f394e0151ac242aff5d">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a2468d86d946f361d96ea90bb8e6e28da"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a> operator* </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>* Operator for derefering of iterator </p>
<dl class="section return"><dt>Returns</dt><dd>FASTEEntry iterator at actual position </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidIterator.html" title="Invalid iterator exception. ">Exception::InvalidIterator</a></td><td>if iterator has not been initialized </td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a1e97ffb93531c2360ae0bb63ab0a62c6">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a55f6d71bc104d273092993e29f301e72"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a>& operator++ </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>++ Operator for the iterator </p>
<dl class="section return"><dt>Returns</dt><dd>reference to <a class="el" href="classOpenMS_1_1PepIterator.html" title="Abstract base class for different peptide iterators. ">PepIterator</a> </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidIterator.html" title="Invalid iterator exception. ">Exception::InvalidIterator</a></td><td>if iterator has not been initialized </td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a6db496644ee00c57075340072ad1d3b8">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a72227229d40a649a89bde5f60d48782e"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a>* operator++ </td>
<td>(</td>
<td class="paramtype">int </td>
<td class="paramname"><em>i</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>++ Operator for the iterator </p>
<dl class="section return"><dt>Returns</dt><dd>pointer to <a class="el" href="classOpenMS_1_1PepIterator.html" title="Abstract base class for different peptide iterators. ">PepIterator</a> </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidIterator.html" title="Invalid iterator exception. ">Exception::InvalidIterator</a></td><td>if iterator has not been initialized </td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#aa4e696669eb33d163d65ec9d3b343b09">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="a7d238aef71f460f8ebe0c267b7b7792b"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual void setFastaFile </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>f</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>setter for FASTA file </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">f</td><td>const <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> reference representing file location </td></tr>
</table>
</dd>
</dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td></td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1ParseError.html" title="Parse Error exception. ">Exception::ParseError</a></td><td></td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#ae4e709e523353cfb85943b8813fdef0f">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="ad8afbc78c6c6e4e0000d7b667751bac9"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual void setSpectrum </td>
<td>(</td>
<td class="paramtype">const std::vector< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>setter for spectrum </p>
<dl class="section note"><dt>Note</dt><dd>note availeble for <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1NotImplemented.html" title="Not implemented exception. ">Exception::NotImplemented</a></td><td></td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#aa3d9038f341c4e7693684bc4608d6ed4">PepIterator</a>.</p>
</div>
</div>
<a class="anchor" id="ac9938ec54ef18bdf4bf4c301ec658546"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual void setTolerance </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>setter for tolerance </p>
<dl class="section note"><dt>Note</dt><dd>note availeble for <a class="el" href="classOpenMS_1_1FastaIterator.html" title="Iterator over FASTA file. ">FastaIterator</a> </dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1NotImplemented.html" title="Not implemented exception. ">Exception::NotImplemented</a></td><td></td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1PepIterator.html#a398690ada878a7dc5e01d57929ef2363">PepIterator</a>.</p>
</div>
</div>
<h2 class="groupheader">Member Data Documentation</h2>
<a class="anchor" id="a7ba6283c04f33a9862039d1f6837b1ff"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">std::vector<<a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a>> entrys_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>content of fasta file </p>
</div>
</div>
<a class="anchor" id="abeb892f8abd86bd20277c1fc96944c10"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> fasta_file_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>location of the fasta file </p>
</div>
</div>
<a class="anchor" id="af6893a80dff1bccfc4b1cf33424acd91"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">std::vector<<a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a21b87598c52cebe4ab2ebc0bb1655e89">FASTAEntry</a>>::iterator it_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>iterator over fasta file content </p>
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|
