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<HTML>
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<TITLE>FeatureDeconvolution Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a></li> </ul>
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<a href="#pub-types">Public Types</a> |
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<div class="title">FeatureDeconvolution Class Reference<div class="ingroups"><a class="el" href="group__Analysis.html">Analysis</a></div></div> </div>
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<div class="contents">
<p>An algorithm to decharge features (i.e. as found by <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>).
<a href="classOpenMS_1_1FeatureDeconvolution.html#details">More...</a></p>
<p><code>#include <<a class="el" href="FeatureDeconvolution_8h_source.html">OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for FeatureDeconvolution:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1FeatureDeconvolution.png" usemap="#FeatureDeconvolution_map" alt=""/>
<map id="FeatureDeconvolution_map" name="FeatureDeconvolution_map">
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,137,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a446e6a53a56ea0d0834e5efc781ece26"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a> { <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26ad7134eaf91a5d43ad48cda0f74d22be0">QFROMFEATURE</a> = 1,
<a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26a1fa1be36806ef6458644f8800db25220">QHEURISTIC</a>,
<a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26a4f4e8e177fecd7b9a041989048b8680f">QALL</a>
}</td></tr>
<tr class="separator:a446e6a53a56ea0d0834e5efc781ece26"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:add205a5ccc5c6579b1a3051b7cf8707c"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a></td></tr>
<tr class="separator:add205a5ccc5c6579b1a3051b7cf8707c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac0c1cb2155ff14cca74fe33ec057ab62"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">FeatureType</a></td></tr>
<tr class="separator:ac0c1cb2155ff14cca74fe33ec057ab62"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a245908b759ecec7e69490a8eff7307f8"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< 2 > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a245908b759ecec7e69490a8eff7307f8">ClusterPointType</a></td></tr>
<tr class="separator:a245908b759ecec7e69490a8eff7307f8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2b382bd00f0bc3e5d06bdfc412428a05"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
FeatureMapType::FeatureType::CoordinateType </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a2b382bd00f0bc3e5d06bdfc412428a05">CoordinateType</a></td></tr>
<tr class="separator:a2b382bd00f0bc3e5d06bdfc412428a05"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aea7cecfe175ce2482ff9bf1a3de2c52c"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#a1fa855763e3c516396c47cd9f995cfe7">ILPDCWrapper::PairsType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a></td></tr>
<tr class="separator:aea7cecfe175ce2482ff9bf1a3de2c52c"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ae83a53d854a5301ffd1cc4a7f22b7a8a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae83a53d854a5301ffd1cc4a7f22b7a8a">compute</a> (const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a> &fm_in, <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a> &fm_out, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &cons_map, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &cons_map_p)</td></tr>
<tr class="memdesc:ae83a53d854a5301ffd1cc4a7f22b7a8a"><td class="mdescLeft"> </td><td class="mdescRight">Compute a zero-charge feature map from a set of charged features. <a href="#ae83a53d854a5301ffd1cc4a7f22b7a8a">More...</a><br/></td></tr>
<tr class="separator:ae83a53d854a5301ffd1cc4a7f22b7a8a"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader">Constructors and Destructor s</div></td></tr>
<tr class="memitem:ae2ef51c8b5c30ec88429c5db1584866c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae2ef51c8b5c30ec88429c5db1584866c">FeatureDeconvolution</a> ()</td></tr>
<tr class="memdesc:ae2ef51c8b5c30ec88429c5db1584866c"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#ae2ef51c8b5c30ec88429c5db1584866c">More...</a><br/></td></tr>
<tr class="separator:ae2ef51c8b5c30ec88429c5db1584866c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae56d77047a7632d6c55d01b56e8fe02a"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae56d77047a7632d6c55d01b56e8fe02a">FeatureDeconvolution</a> (const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> &source)</td></tr>
<tr class="memdesc:ae56d77047a7632d6c55d01b56e8fe02a"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#ae56d77047a7632d6c55d01b56e8fe02a">More...</a><br/></td></tr>
<tr class="separator:ae56d77047a7632d6c55d01b56e8fe02a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a225ff7607594631bcd5686481beb25c2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a225ff7607594631bcd5686481beb25c2">operator=</a> (const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> &source)</td></tr>
<tr class="memdesc:a225ff7607594631bcd5686481beb25c2"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#a225ff7607594631bcd5686481beb25c2">More...</a><br/></td></tr>
<tr class="separator:a225ff7607594631bcd5686481beb25c2"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa2c404e84b42cd103498b19cb70217fc"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aa2c404e84b42cd103498b19cb70217fc">~FeatureDeconvolution</a> ()</td></tr>
<tr class="memdesc:aa2c404e84b42cd103498b19cb70217fc"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#aa2c404e84b42cd103498b19cb70217fc">More...</a><br/></td></tr>
<tr class="separator:aa2c404e84b42cd103498b19cb70217fc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aaf258e1a9846d9b238ee4b3005ad3ee9">updateMembers_</a> ()</td></tr>
<tr class="memdesc:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#aaf258e1a9846d9b238ee4b3005ad3ee9">More...</a><br/></td></tr>
<tr class="separator:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4f9eda9404cdcea193c2da7a6442dfda"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a4f9eda9404cdcea193c2da7a6442dfda">checkSolution_</a> (const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &cons_map) const </td></tr>
<tr class="separator:a4f9eda9404cdcea193c2da7a6442dfda"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7707915478d7488f0bbdc2e559c8ee4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#af7707915478d7488f0bbdc2e559c8ee4">inferMoreEdges_</a> (<a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a> &edges, <a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>, std::set< CmpInfo_ > > &feature_adducts)</td></tr>
<tr class="separator:af7707915478d7488f0bbdc2e559c8ee4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6a5684488808821b534f35c6f6b7b9e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae6a5684488808821b534f35c6f6b7b9e">printEdgesOfConnectedFeatures_</a> (<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> idx_1, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> idx_2, const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a> &feature_relation)</td></tr>
<tr class="memdesc:ae6a5684488808821b534f35c6f6b7b9e"><td class="mdescLeft"> </td><td class="mdescRight">A function mostly for debugging. <a href="#ae6a5684488808821b534f35c6f6b7b9e">More...</a><br/></td></tr>
<tr class="separator:ae6a5684488808821b534f35c6f6b7b9e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aebfbef9061da6b590fdbd13b3f785d02"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aebfbef9061da6b590fdbd13b3f785d02">intensityFilterPassed_</a> (const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> q1, const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> q2, const <a class="el" href="classOpenMS_1_1Compomer.html">Compomer</a> &cmp, const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">FeatureType</a> &f1, const <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">FeatureType</a> &f2)</td></tr>
<tr class="memdesc:aebfbef9061da6b590fdbd13b3f785d02"><td class="mdescLeft"> </td><td class="mdescRight">returns true if the intensity filter was passed or switched off <a href="#aebfbef9061da6b590fdbd13b3f785d02">More...</a><br/></td></tr>
<tr class="separator:aebfbef9061da6b590fdbd13b3f785d02"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa67069d72956b5d8d3fdd0108ce37b31"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aa67069d72956b5d8d3fdd0108ce37b31">chargeTestworthy_</a> (const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> feature_charge, const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> putative_charge, const bool other_unchanged) const </td></tr>
<tr class="memdesc:aa67069d72956b5d8d3fdd0108ce37b31"><td class="mdescLeft"> </td><td class="mdescRight">determines if we should test a putative feature charge <a href="#aa67069d72956b5d8d3fdd0108ce37b31">More...</a><br/></td></tr>
<tr class="separator:aa67069d72956b5d8d3fdd0108ce37b31"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:ac7727ba3f3253cf99751a2d64eb92582"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MassExplainer.html#af4f87e770c56cc4f47fd47833add8ba3">MassExplainer::AdductsType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac7727ba3f3253cf99751a2d64eb92582">potential_adducts_</a></td></tr>
<tr class="memdesc:ac7727ba3f3253cf99751a2d64eb92582"><td class="mdescLeft"> </td><td class="mdescRight">List of adducts used to explain mass differences. <a href="#ac7727ba3f3253cf99751a2d64eb92582">More...</a><br/></td></tr>
<tr class="separator:ac7727ba3f3253cf99751a2d64eb92582"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad091d2c0a14e3ee2f7d434e35f858826"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>, <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ad091d2c0a14e3ee2f7d434e35f858826">map_label_</a></td></tr>
<tr class="memdesc:ad091d2c0a14e3ee2f7d434e35f858826"><td class="mdescLeft"> </td><td class="mdescRight">labeling table <a href="#ad091d2c0a14e3ee2f7d434e35f858826">More...</a><br/></td></tr>
<tr class="separator:ad091d2c0a14e3ee2f7d434e35f858826"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1032fa6e6ac2839d8d7e99a15960d213"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a1032fa6e6ac2839d8d7e99a15960d213">map_label_inverse_</a></td></tr>
<tr class="memdesc:a1032fa6e6ac2839d8d7e99a15960d213"><td class="mdescLeft"> </td><td class="mdescRight">labeling table inverse <a href="#a1032fa6e6ac2839d8d7e99a15960d213">More...</a><br/></td></tr>
<tr class="separator:a1032fa6e6ac2839d8d7e99a15960d213"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a40b36349add03ea8664fd7b219493a0c"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a40b36349add03ea8664fd7b219493a0c">enable_intensity_filter_</a></td></tr>
<tr class="memdesc:a40b36349add03ea8664fd7b219493a0c"><td class="mdescLeft"> </td><td class="mdescRight">status of intensity filter for edges <a href="#a40b36349add03ea8664fd7b219493a0c">More...</a><br/></td></tr>
<tr class="separator:a40b36349add03ea8664fd7b219493a0c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a50f1005db798de909c08506780f1f083"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a50f1005db798de909c08506780f1f083">q_try_</a></td></tr>
<tr class="memdesc:a50f1005db798de909c08506780f1f083"><td class="mdescLeft"> </td><td class="mdescRight">status of charge discovery <a href="#a50f1005db798de909c08506780f1f083">More...</a><br/></td></tr>
<tr class="separator:a50f1005db798de909c08506780f1f083"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae4a519159f827033025f26be18263bbd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae4a519159f827033025f26be18263bbd">verbose_level_</a></td></tr>
<tr class="memdesc:ae4a519159f827033025f26be18263bbd"><td class="mdescLeft"> </td><td class="mdescRight">amount of debug information displayed <a href="#ae4a519159f827033025f26be18263bbd">More...</a><br/></td></tr>
<tr class="separator:ae4a519159f827033025f26be18263bbd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
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<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>An algorithm to decharge features (i.e. as found by <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>). </p>
<B>Parameters of this class are:</B><BR><BR>
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<td style="vertical-align:top"><b>charge_min</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Minimal possible charge</td>
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<td style="vertical-align:top"><b>charge_max</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">10</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximal possible charge</td>
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<td style="vertical-align:top"><b>charge_span_max</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">4</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Maximal range of charges for a single analyte, i.e. observing q1=[5,6,7] implies span=3. Setting this to 1 will only find adduct variants of the same charge</td>
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<td style="vertical-align:top"><b>q_try</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">feature</td>
<td style="vertical-align:top">feature, heuristic, all</td><td style="vertical-align:top">Try different values of charge for each feature according to the above settings ('heuristic' [does not test all charges, just the likely ones] or 'all' ), or leave feature charge untouched ('feature').</td>
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<td style="vertical-align:top"><b>retention_max_diff</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximum allowed RT difference between any two features if their relation shall be determined</td>
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<td style="vertical-align:top"><b>retention_max_diff_local</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximum allowed RT difference between between two co-features, after adduct shifts have been accounted for (if you do not have any adduct shifts, this value should be equal to 'retention_max_diff', otherwise it should be smaller!)</td>
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<td style="vertical-align:top"><b>mass_max_diff</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.5</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximum allowed mass difference [in Th] for a single feature.</td>
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<td style="vertical-align:top"><b>potential_adducts</b></td>
<td style="vertical-align:top">string list</td><td style="vertical-align:top">[H+:0.9]</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Adducts used to explain mass differences in format: 'Element(+)*:Probability[:RTShift[:Label]]', i.e. the number of '+' indicate the charge, e.g. 'Ca++:0.5' indicates +2. Probabilites have to be in (0,1]. RTShift param is optional and indicates the expected RT shift caused by this adduct, e.g. '(2)H4H-4:1:-3' indicates a 4 deuterium label, which causes early elution by 3 seconds. As a fourth parameter you can add a label which is tagged on every feature which has this adduct. This also determines the map number in the consensus file.</td>
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<td style="vertical-align:top"><b>max_neutrals</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximal number of neutral adducts(q=0) allowed. Add them in the 'potential_adducts' section!</td>
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<td style="vertical-align:top"><b>max_minority_bound</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">2</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum count of the least probable adduct (according to 'potential_adducts' param) within a charge variant. E.g. setting this to 2 will not allow an adduct composition of '1(H+),3(Na+)' if Na+ is the least probable adduct</td>
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<td style="vertical-align:top"><b>min_rt_overlap</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.66</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Minimum overlap of the convex hull' RT intersection measured against the union from two features (if CHs are given)</td>
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<td style="vertical-align:top"><b>intensity_filter</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">false</td>
<td style="vertical-align:top">true, false</td><td style="vertical-align:top">Enable the intensity filter, which will only allow edges between two equally charged features if the intensity of the feature with less likely adducts is smaller than that of the other feature. It is not used for features of different charge.</td>
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<td style="vertical-align:top"><i>default_map_label</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">decharged features</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Label of map in output consensus file where all features are put by default</td>
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<td style="vertical-align:top"><i>verbose_level</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top">min: 0 max: 3</td><td style="vertical-align:top">Amount of debug information given during processing.</td>
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</table>
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<b>Note:</b>
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<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
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</div><h2 class="groupheader">Member Typedef Documentation</h2>
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<td class="memname">typedef FeatureMapType::FeatureType::CoordinateType <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a2b382bd00f0bc3e5d06bdfc412428a05">CoordinateType</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#add205a5ccc5c6579b1a3051b7cf8707c">FeatureMapType</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac0c1cb2155ff14cca74fe33ec057ab62">FeatureType</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#a1fa855763e3c516396c47cd9f995cfe7">ILPDCWrapper::PairsType</a> <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">PairsType</a></td>
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<td class="memname">enum <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a></td>
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<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a446e6a53a56ea0d0834e5efc781ece26ad7134eaf91a5d43ad48cda0f74d22be0"></a>QFROMFEATURE</em> </td><td class="fielddoc">
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> </td>
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<p>default constructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> </td>
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<p>Copy constructor. </p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a> </td>
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<p>destructor </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">bool chargeTestworthy_ </td>
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<td class="paramtype">const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td>
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<p>determines if we should test a putative feature charge </p>
<p>Answer query given the internal status of <em>q_try</em>. Features with q<=0 always return true. </p>
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<td class="memname">void checkSolution_ </td>
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<td class="memname">void compute </td>
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<p>Compute a zero-charge feature map from a set of charged features. </p>
<p>Find putative ChargePairs, then score them and hand over to ILP.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">fm_in</td><td>Input feature-map </td></tr>
<tr><td class="paramname">fm_out</td><td>Output feature-map (sorted by position and augmented with user params) </td></tr>
<tr><td class="paramname">cons_map</td><td>[out] Output of grouped features belonging to a charge group </td></tr>
<tr><td class="paramname">cons_map_p</td><td>[out] Output of paired features connected by an edge </td></tr>
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<td class="memname">void inferMoreEdges_ </td>
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<p>test if "simple" edges have alternative (more difficult explanation) supported by neighboring edges e.g. (.) -> (H+) might be augmented to (Na+) -> (H+Na+) </p>
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<p>returns true if the intensity filter was passed or switched off </p>
<p>Filter for adding an edge only when the two features connected by it, fulfill the intensity criterion. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a>& operator= </td>
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<p>Assignment operator. </p>
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<td class="memname">void printEdgesOfConnectedFeatures_ </td>
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<p>A function mostly for debugging. </p>
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<p>This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. </p>
<p>Also call it at the end of the derived classes' copy constructor and assignment operator.</p>
<p>The default implementation is empty. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">DefaultParamHandler</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<p>status of intensity filter for edges </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>, <a class="el" href="classOpenMS_1_1String.html">String</a>> map_label_</td>
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<p>labeling table </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>> map_label_inverse_</td>
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<p>labeling table inverse </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1MassExplainer.html#af4f87e770c56cc4f47fd47833add8ba3">MassExplainer::AdductsType</a> potential_adducts_</td>
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<p>List of adducts used to explain mass differences. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a446e6a53a56ea0d0834e5efc781ece26">CHARGEMODE</a> q_try_</td>
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<p>status of charge discovery </p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> verbose_level_</td>
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<p>amount of debug information displayed </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:25 using doxygen 1.8.5</font></TD>
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